##fileformat=VCFv4.1
##fileDate=20200405
##source=GenerateSVCandidates 1.6.0
##reference=file:///home/cameron.d/projects/colo829/ref/Homo_sapiens.GRCh37.GATK.illumina.fa
##contig=<ID=1,length=249250621>
##contig=<ID=2,length=243199373>
##contig=<ID=3,length=198022430>
##contig=<ID=4,length=191154276>
##contig=<ID=5,length=180915260>
##contig=<ID=6,length=171115067>
##contig=<ID=7,length=159138663>
##contig=<ID=8,length=146364022>
##contig=<ID=9,length=141213431>
##contig=<ID=10,length=135534747>
##contig=<ID=11,length=135006516>
##contig=<ID=12,length=133851895>
##contig=<ID=13,length=115169878>
##contig=<ID=14,length=107349540>
##contig=<ID=15,length=102531392>
##contig=<ID=16,length=90354753>
##contig=<ID=17,length=81195210>
##contig=<ID=18,length=78077248>
##contig=<ID=19,length=59128983>
##contig=<ID=20,length=63025520>
##contig=<ID=21,length=48129895>
##contig=<ID=22,length=51304566>
##contig=<ID=X,length=155270560>
##contig=<ID=Y,length=59373566>
##contig=<ID=MT,length=16569>
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS">
##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END">
##INFO=<ID=CIGAR,Number=A,Type=String,Description="CIGAR alignment for each alternate indel allele">
##INFO=<ID=MATEID,Number=.,Type=String,Description="ID of mate breakend">
##INFO=<ID=EVENT,Number=1,Type=String,Description="ID of event associated to breakend">
##INFO=<ID=HOMLEN,Number=.,Type=Integer,Description="Length of base pair identical homology at event breakpoints">
##INFO=<ID=HOMSEQ,Number=.,Type=String,Description="Sequence of base pair identical homology at event breakpoints">
##INFO=<ID=SVINSLEN,Number=.,Type=Integer,Description="Length of insertion">
##INFO=<ID=SVINSSEQ,Number=.,Type=String,Description="Sequence of insertion">
##INFO=<ID=LEFT_SVINSSEQ,Number=.,Type=String,Description="Known left side of insertion for an insertion of unknown length">
##INFO=<ID=RIGHT_SVINSSEQ,Number=.,Type=String,Description="Known right side of insertion for an insertion of unknown length">
##INFO=<ID=BND_DEPTH,Number=1,Type=Integer,Description="Read depth at local translocation breakend">
##INFO=<ID=MATE_BND_DEPTH,Number=1,Type=Integer,Description="Read depth at remote translocation mate breakend">
##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Somatic mutation">
##INFO=<ID=SOMATICSCORE,Number=1,Type=Integer,Description="Somatic variant quality score">
##INFO=<ID=JUNCTION_SOMATICSCORE,Number=1,Type=Integer,Description="If the SV junctino is part of an EVENT (ie. a multi-adjacency variant), this field provides the SOMATICSCORE value for the adjacency in question only">
##FORMAT=<ID=PR,Number=.,Type=Integer,Description="Spanning paired-read support for the ref and alt alleles in the order listed">
##FORMAT=<ID=SR,Number=.,Type=Integer,Description="Split reads for the ref and alt alleles in the order listed, for reads where P(allele|read)>0.999">
##FILTER=<ID=MaxDepth,Description="Normal sample site depth is greater than 3x the median chromosome depth near one or both variant breakends">
##FILTER=<ID=MinSomaticScore,Description="Somatic score is less than 30">
##FILTER=<ID=MaxMQ0Frac,Description="For a small variant (<1000 bases) in the normal sample, the fraction of reads with MAPQ0 around either breakend exceeds 0.4">
##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=INS,Description="Insertion">
##ALT=<ID=DUP:TANDEM,Description="Tandem Duplication">
##cmdline=/home/cameron.d/projects/gridss-purple-linx/manta/colo829_3/../bin/manta-1.6.0.centos6_x86_64/bin/configManta.py --normalBam=/home/cameron.d/projects/colo829/COLO829v003R_dedup.realigned.bam --tumourBam=/home/cameron.d/projects/colo829/COLO829v003T_dedup.realigned.bam --referenceFasta=/home/cameron.d/projects/colo829/ref/Homo_sapiens.GRCh37.GATK.illumina.fa --runDir=/home/cameron.d/projects/gridss-purple-linx/manta/colo829_3
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	COLO829R	COLO829T
1	224938488	MantaBND:5:671:677:0:0:0:0	A	[9:137177507[A	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:671:677:0:0:0:1;IMPRECISE;CIPOS=-213,214;EVENT=MantaBND:5:671:677:0:0:0:0;SOMATIC;SOMATICSCORE=38;JUNCTION_SOMATICSCORE=0;BND_DEPTH=44;MATE_BND_DEPTH=37	PR	39,0	154,5
9	137177507	MantaBND:5:671:677:0:0:0:1	T	[1:224938488[T	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:671:677:0:0:0:0;IMPRECISE;CIPOS=-393,393;EVENT=MantaBND:5:671:677:0:0:0:0;SOMATIC;SOMATICSCORE=38;JUNCTION_SOMATICSCORE=0;BND_DEPTH=37;MATE_BND_DEPTH=44	PR	39,0	154,5
1	224939080	MantaBND:5:671:677:1:0:0:0	G	G]9:137177531]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:671:677:1:0:0:1;IMPRECISE;CIPOS=-269,269;EVENT=MantaBND:5:671:677:0:0:0:0;SOMATIC;SOMATICSCORE=38;JUNCTION_SOMATICSCORE=0;BND_DEPTH=43;MATE_BND_DEPTH=37	PR	43,0	173,3
9	137177531	MantaBND:5:671:677:1:0:0:1	G	G]1:224939080]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:671:677:1:0:0:0;IMPRECISE;CIPOS=-401,401;EVENT=MantaBND:5:671:677:0:0:0:0;SOMATIC;SOMATICSCORE=38;JUNCTION_SOMATICSCORE=0;BND_DEPTH=37;MATE_BND_DEPTH=43	PR	43,0	173,3
16	87244217	MantaBND:5:1018:4782:0:0:0:0	A	A]2:30164875]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:1018:4782:0:0:0:1;IMPRECISE;CIPOS=-235,236;EVENT=MantaBND:5:1018:4782:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=15;BND_DEPTH=45;MATE_BND_DEPTH=51	PR	61,1	122,10
2	30164875	MantaBND:5:1018:4782:0:0:0:1	A	A]16:87244217]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:1018:4782:0:0:0:0;IMPRECISE;CIPOS=-311,312;EVENT=MantaBND:5:1018:4782:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=15;BND_DEPTH=51;MATE_BND_DEPTH=45	PR	61,1	122,10
2	30164813	MantaBND:5:1018:4782:1:0:0:0	C	[16:87243666[C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:1018:4782:1:0:0:1;IMPRECISE;CIPOS=-433,434;EVENT=MantaBND:5:1018:4782:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=75;MATE_BND_DEPTH=56	PR	50,2	119,5
16	87243666	MantaBND:5:1018:4782:1:0:0:1	A	[2:30164813[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:1018:4782:1:0:0:0;IMPRECISE;CIPOS=-249,249;EVENT=MantaBND:5:1018:4782:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=56;MATE_BND_DEPTH=75	PR	50,2	119,5
1	29720868	MantaDUP:TANDEM:5:1134:1135:1:0:0	T	<DUP:TANDEM>	.	MinSomaticScore	END=30878810;SVTYPE=DUP;SVLEN=1157942;IMPRECISE;CIPOS=-387,388;CIEND=-264,264;SOMATIC;SOMATICSCORE=11	PR	39,1	78,11
2	15693666	MantaBND:5:1289:1290:0:0:0:0	G	]1:37911758]G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:1289:1290:0:0:0:1;IMPRECISE;CIPOS=-255,255;SOMATIC;SOMATICSCORE=16;BND_DEPTH=39;MATE_BND_DEPTH=40	PR	41,1	88,7
1	37911758	MantaBND:5:1289:1290:0:0:0:1	T	T[2:15693666[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:1289:1290:0:0:0:0;IMPRECISE;CIPOS=-406,406;SOMATIC;SOMATICSCORE=16;BND_DEPTH=40;MATE_BND_DEPTH=39	PR	41,1	88,7
1	166999007	MantaBND:5:2703:2704:0:0:0:0	T	T[14:49067882[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:2703:2704:0:0:0:1;CIPOS=0,27;HOMLEN=27;HOMSEQ=ACCCGGCAGCCACCCCGTCTGGGAGGT;SOMATIC;SOMATICSCORE=12;BND_DEPTH=24;MATE_BND_DEPTH=37	PR:SR	55,0:27,0	133,0:59,22
14	49067882	MantaBND:5:2703:2704:0:0:0:1	A	]1:166999007]A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:2703:2704:0:0:0:0;CIPOS=0,27;HOMLEN=27;HOMSEQ=CCCGGCAGCCACCCCGTCTGGGAGGTG;SOMATIC;SOMATICSCORE=12;BND_DEPTH=37;MATE_BND_DEPTH=24	PR:SR	55,0:27,0	133,0:59,22
18	75998560	MantaBND:5:5633:15068:0:0:0:0	T	T]3:13241798]	.	MaxDepth;MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:5633:15068:0:0:0:1;IMPRECISE;CIPOS=-373,374;SOMATIC;SOMATICSCORE=13;BND_DEPTH=151;MATE_BND_DEPTH=45	PR	38,0	95,6
3	13241798	MantaBND:5:5633:15068:0:0:0:1	C	C]18:75998560]	.	MaxDepth;MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:5633:15068:0:0:0:0;IMPRECISE;CIPOS=-296,297;SOMATIC;SOMATICSCORE=13;BND_DEPTH=45;MATE_BND_DEPTH=151	PR	38,0	95,6
11	26418539	MantaBND:5:5650:31462:0:0:0:0	A	[8:129465231[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:5650:31462:0:0:0:1;CIPOS=0,1;HOMLEN=1;HOMSEQ=G;SOMATIC;SOMATICSCORE=21;BND_DEPTH=49;MATE_BND_DEPTH=66	PR:SR	28,0:19,2	21,1:1,28
8	129465230	MantaBND:5:5650:31462:0:0:0:1	T	[11:26418540[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:5650:31462:0:0:0:0;CIPOS=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=21;BND_DEPTH=66;MATE_BND_DEPTH=49	PR:SR	28,0:19,2	21,1:1,28
10	5412030	MantaDEL:5:6567:6567:0:1:0	GTGTGTATATGCGTGTGTATATGCGTGTGTATATGCGTGTGTATATGTGTGTGTATGTGTGTGTATGTGTGTGTATGCGTGTGTATATGTGTGTGTATATGTGTGTGTATATGCGTGTGTATATGCGTGTGTATATGCGTGTGTATGTGTGTGTATGTGCGTGTGTGTATGCGTGTGTGTATGCGTGTGTATATGCGTGTGTATATGCGTGTGTATATGCGTGTGTGTATGCGTGTGTATATGCGTGTATGTGTGTGTATATGCGTGTGTATATGCGTGTGTATATGTGTGTGTATATGCGTGTGTATATGCGTGTATATGCGTGTGTATATGTGTGTGTATATGTGTGTGTGTATATGCGTGTGTATATGCGTGTGTATGTGTGTGTGTATATGTGTGTATATGCGTGTGTATATGTGTGTATGTGTGTGTATATGCGTGTGTATATGTGTGTGTATGTGTGTGTGTATATGCGTGTATATGTGTGTATATGTGTGTGTATATGCGTGTATATGTGTGTATATGTGTGTGTGTATGCGTGTGTATATGC	GCGT	.	MinSomaticScore	END=5412579;SVTYPE=DEL;SVLEN=-549;CIGAR=1M3I549D;SOMATIC;SOMATICSCORE=18	PR:SR	15,0:10,3	13,2:0,14
19	44869700	MantaBND:5:6974:6977:0:0:0:0	T	[2:133096363[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:6974:6977:0:0:0:1;IMPRECISE;CIPOS=-217,218;SOMATIC;SOMATICSCORE=18;BND_DEPTH=41;MATE_BND_DEPTH=84	PR	114,1	315,10
2	133096363	MantaBND:5:6974:6977:0:0:0:1	T	[19:44869700[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:6974:6977:0:0:0:0;IMPRECISE;CIPOS=-303,304;SOMATIC;SOMATICSCORE=18;BND_DEPTH=84;MATE_BND_DEPTH=41	PR	114,1	315,10
2	130969163	MantaBND:5:7043:7044:0:0:0:0	C	[2:132220483[C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:7043:7044:0:0:0:1;IMPRECISE;CIPOS=-250,250;SOMATIC;SOMATICSCORE=12;BND_DEPTH=67;MATE_BND_DEPTH=39	PR	97,1	175,7
2	132220483	MantaBND:5:7043:7044:0:0:0:1	A	[2:130969163[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:7043:7044:0:0:0:0;IMPRECISE;CIPOS=-272,272;SOMATIC;SOMATICSCORE=12;BND_DEPTH=39;MATE_BND_DEPTH=67	PR	97,1	175,7
17	7059699	MantaBND:5:8306:34206:0:0:0:0	G	]9:137146364]G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:8306:34206:0:0:0:1;IMPRECISE;CIPOS=-261,262;EVENT=MantaBND:5:8306:34206:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=10;BND_DEPTH=43;MATE_BND_DEPTH=34	PR	46,1	125,7
9	137146364	MantaBND:5:8306:34206:0:0:0:1	C	C[17:7059699[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:8306:34206:0:0:0:0;IMPRECISE;CIPOS=-391,391;EVENT=MantaBND:5:8306:34206:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=10;BND_DEPTH=34;MATE_BND_DEPTH=43	PR	46,1	125,7
17	7060266	MantaBND:5:8306:34206:1:0:0:0	T	T[9:137146095[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:8306:34206:1:0:0:1;IMPRECISE;CIPOS=-258,259;EVENT=MantaBND:5:8306:34206:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=50;MATE_BND_DEPTH=82	PR	48,1	132,4
9	137146095	MantaBND:5:8306:34206:1:0:0:1	A	]17:7060266]A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:8306:34206:1:0:0:0;IMPRECISE;CIPOS=-343,344;EVENT=MantaBND:5:8306:34206:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=82;MATE_BND_DEPTH=50	PR	48,1	132,4
1	223911459	MantaBND:5:8325:8333:0:0:0:0	G	[3:118317858[G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:8325:8333:0:0:0:1;IMPRECISE;CIPOS=-375,376;SOMATIC;SOMATICSCORE=12;BND_DEPTH=30;MATE_BND_DEPTH=41	PR	55,0	184,13
3	118317858	MantaBND:5:8325:8333:0:0:0:1	G	[1:223911459[G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:8325:8333:0:0:0:0;IMPRECISE;CIPOS=-242,243;SOMATIC;SOMATICSCORE=12;BND_DEPTH=41;MATE_BND_DEPTH=30	PR	55,0	184,13
22	42182228	MantaBND:5:9451:9453:0:0:0:0	T	T]4:120602188]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:9451:9453:0:0:0:1;IMPRECISE;CIPOS=-241,241;EVENT=MantaBND:5:9451:9453:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=17;BND_DEPTH=43;MATE_BND_DEPTH=39	PR	68,1	201,13
4	120602188	MantaBND:5:9451:9453:0:0:0:1	T	T]22:42182228]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:9451:9453:0:0:0:0;IMPRECISE;CIPOS=-381,381;EVENT=MantaBND:5:9451:9453:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=17;BND_DEPTH=39;MATE_BND_DEPTH=43	PR	68,1	201,13
22	42181896	MantaBND:5:9451:9453:1:2:0:0	T	[4:120602314[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:9451:9453:1:2:0:1;CIPOS=0,2;HOMLEN=2;HOMSEQ=TT;EVENT=MantaBND:5:9451:9453:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=62;MATE_BND_DEPTH=32	PR:SR	36,0:25,8	145,5:39,61
4	120602312	MantaBND:5:9451:9453:1:2:0:1	A	[22:42181898[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:9451:9453:1:2:0:0;CIPOS=0,2;HOMLEN=2;HOMSEQ=AT;EVENT=MantaBND:5:9451:9453:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=32;MATE_BND_DEPTH=62	PR:SR	36,0:25,8	145,5:39,61
18	5308586	MantaBND:5:10284:10284:6:0:0:0	A	A]18:5308742]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:10284:10284:6:0:0:1;IMPRECISE;CIPOS=-490,491;SOMATIC;SOMATICSCORE=11;BND_DEPTH=34;MATE_BND_DEPTH=34	PR	37,1	39,7
18	5308742	MantaBND:5:10284:10284:6:0:0:1	G	G]18:5308586]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:10284:10284:6:0:0:0;IMPRECISE;CIPOS=-356,356;SOMATIC;SOMATICSCORE=11;BND_DEPTH=34;MATE_BND_DEPTH=34	PR	37,1	39,7
14	56184745	MantaBND:5:10617:12986:0:2:0:0	T	]3:189255451]T	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:10617:12986:0:2:0:1;CIPOS=0,10;HOMLEN=10;HOMSEQ=TTCTTTCTTT;SOMATIC;SOMATICSCORE=44;BND_DEPTH=40;MATE_BND_DEPTH=39	PR:SR	46,0:19,3	161,0:59,25
3	189255451	MantaBND:5:10617:12986:0:2:0:1	C	C[14:56184745[	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:10617:12986:0:2:0:0;CIPOS=0,10;HOMLEN=10;HOMSEQ=TTTCTTTCTT;SOMATIC;SOMATICSCORE=44;BND_DEPTH=39;MATE_BND_DEPTH=40	PR:SR	46,0:19,3	161,0:59,25
15	45642097	MantaBND:5:11346:30174:0:0:0:0	G	G]8:50851196]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:11346:30174:0:0:0:1;IMPRECISE;CIPOS=-224,225;SOMATIC;SOMATICSCORE=18;BND_DEPTH=54;MATE_BND_DEPTH=35	PR	78,0	142,8
8	50851196	MantaBND:5:11346:30174:0:0:0:1	T	T]15:45642097]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:11346:30174:0:0:0:0;IMPRECISE;CIPOS=-380,380;SOMATIC;SOMATICSCORE=18;BND_DEPTH=35;MATE_BND_DEPTH=54	PR	78,0	142,8
3	129717889	MantaBND:5:11782:11829:0:0:0:0	A	[3:125489758[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:11782:11829:0:0:0:1;IMPRECISE;CIPOS=-324,325;EVENT=MantaBND:5:11782:11829:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=41;MATE_BND_DEPTH=18	PR	36,3	106,8
3	125489758	MantaBND:5:11782:11829:0:0:0:1	T	[3:129717889[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:11782:11829:0:0:0:0;IMPRECISE;CIPOS=-445,446;EVENT=MantaBND:5:11782:11829:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=18;MATE_BND_DEPTH=41	PR	36,3	106,8
3	129718457	MantaBND:5:11782:11829:1:0:0:0	A	A]3:125488938]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:11782:11829:1:0:0:1;IMPRECISE;CIPOS=-275,276;EVENT=MantaBND:5:11782:11829:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=13;BND_DEPTH=41;MATE_BND_DEPTH=74	PR	80,1	270,15
3	125488938	MantaBND:5:11782:11829:1:0:0:1	T	T]3:129718457]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:11782:11829:1:0:0:0;IMPRECISE;CIPOS=-455,455;EVENT=MantaBND:5:11782:11829:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=13;BND_DEPTH=74;MATE_BND_DEPTH=41	PR	80,1	270,15
3	149482329	MantaDUP:TANDEM:5:12079:12079:2:0:0	T	<DUP:TANDEM>	.	MinSomaticScore	END=149482401;SVTYPE=DUP;SVLEN=72;CIPOS=0,1;CIEND=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=14	PR:SR	27,0:29,0	96,0:87,6
2	215701124	MantaINS:5:12140:12140:0:10:0	A	<INS>	.	MinSomaticScore	END=215701124;SVTYPE=INS;CIPOS=0,8;CIEND=0,8;HOMLEN=8;HOMSEQ=GGGAGAGG;LEFT_SVINSSEQ=GGGAGAGGCTAGAGAATGCTTTTCATGTCTTAAAAGGTTTCCTTTAATCTGATCTATTAAATG;RIGHT_SVINSSEQ=GGGGGGACCGTGCAGGGGGCGGGGAGGGGGGACGGGGGGGGAGGGGGGAGGGGGAGGGGGACGGGGGGGGGGGGGAGAGAGGGGGGGGAAGG;SOMATIC;SOMATICSCORE=14	PR:SR	0,0:6,1	0,0:12,11
6	26194406	MantaBND:5:12167:12167:0:0:0:0	A	A]6:26194117]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:12167:12167:0:0:0:1;SOMATIC;SOMATICSCORE=48;BND_DEPTH=46;MATE_BND_DEPTH=44	PR:SR	60,0:61,0	206,1:217,32
6	26194117	MantaBND:5:12167:12167:0:0:0:1	G	G]6:26194406]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:12167:12167:0:0:0:0;SOMATIC;SOMATICSCORE=48;BND_DEPTH=44;MATE_BND_DEPTH=46	PR:SR	60,0:61,0	206,1:217,32
6	26194039	MantaBND:5:12166:12167:0:1:0:0	C	[3:26431919[C	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:12166:12167:0:1:0:1;CIPOS=0,2;HOMLEN=2;HOMSEQ=AA;SOMATIC;SOMATICSCORE=71;BND_DEPTH=53;MATE_BND_DEPTH=32	PR:SR	55,0:54,0	281,34:213,32
3	26431917	MantaBND:5:12166:12167:0:1:0:1	T	[6:26194041[T	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:12166:12167:0:1:0:0;CIPOS=0,2;HOMLEN=2;HOMSEQ=GG;SOMATIC;SOMATICSCORE=71;BND_DEPTH=32;MATE_BND_DEPTH=53	PR:SR	55,0:54,0	281,34:213,32
6	26194507	MantaBND:5:12166:12167:1:0:0:0	T	T[3:26432054[	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:12166:12167:1:0:0:1;IMPRECISE;CIPOS=-389,390;SOMATIC;SOMATICSCORE=41;BND_DEPTH=54;MATE_BND_DEPTH=35	PR	65,0	372,17
3	26432054	MantaBND:5:12166:12167:1:0:0:1	C	]6:26194507]C	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:12166:12167:1:0:0:0;IMPRECISE;CIPOS=-501,501;SOMATIC;SOMATICSCORE=41;BND_DEPTH=35;MATE_BND_DEPTH=54	PR	65,0	372,17
7	56218926	MantaBND:5:12236:24733:0:0:0:0	T	[X:42144863[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:12236:24733:0:0:0:1;IMPRECISE;CIPOS=-229,229;SOMATIC;SOMATICSCORE=11;BND_DEPTH=28;MATE_BND_DEPTH=19	PR	8,0	25,5
X	42144863	MantaBND:5:12236:24733:0:0:0:1	C	[7:56218926[C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:12236:24733:0:0:0:0;IMPRECISE;CIPOS=-321,322;SOMATIC;SOMATICSCORE=11;BND_DEPTH=19;MATE_BND_DEPTH=28	PR	8,0	25,5
20	60680908	MantaBND:5:13270:40710:2:0:0:0	G	G]12:306525]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:13270:40710:2:0:0:1;IMPRECISE;CIPOS=-536,536;SOMATIC;SOMATICSCORE=18;BND_DEPTH=50;MATE_BND_DEPTH=44	PR	58,0	205,8
12	306525	MantaBND:5:13270:40710:2:0:0:1	C	C]20:60680908]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:13270:40710:2:0:0:0;IMPRECISE;CIPOS=-260,261;SOMATIC;SOMATICSCORE=18;BND_DEPTH=44;MATE_BND_DEPTH=50	PR	58,0	205,8
9	96384770	MantaBND:5:13744:44257:0:0:0:0	T	[13:19644842[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:13744:44257:0:0:0:1;IMPRECISE;CIPOS=-218,218;SOMATIC;SOMATICSCORE=22;BND_DEPTH=44;MATE_BND_DEPTH=73	PR	89,0	292,8
13	19644842	MantaBND:5:13744:44257:0:0:0:1	A	[9:96384770[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:13744:44257:0:0:0:0;IMPRECISE;CIPOS=-442,442;SOMATIC;SOMATICSCORE=22;BND_DEPTH=73;MATE_BND_DEPTH=44	PR	89,0	292,8
9	96385345	MantaBND:5:13744:44253:0:0:0:0	C	C]13:19644491]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:13744:44253:0:0:0:1;IMPRECISE;CIPOS=-230,230;SOMATIC;SOMATICSCORE=32;BND_DEPTH=41;MATE_BND_DEPTH=59	PR	92,0	340,9
13	19644491	MantaBND:5:13744:44253:0:0:0:1	G	G]9:96385345]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:13744:44253:0:0:0:0;IMPRECISE;CIPOS=-419,419;SOMATIC;SOMATICSCORE=32;BND_DEPTH=59;MATE_BND_DEPTH=41	PR	92,0	340,9
12	93878747	MantaBND:5:14264:43249:0:4:0:0	C	C]6:109043496]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:14264:43249:0:4:0:1;CIPOS=0,1;HOMLEN=1;HOMSEQ=A;SOMATIC;SOMATICSCORE=11;BND_DEPTH=27;MATE_BND_DEPTH=28	PR:SR	34,0:15,10	86,0:45,34
6	109043495	MantaBND:5:14264:43249:0:4:0:1	A	A]12:93878748]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:14264:43249:0:4:0:0;CIPOS=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=11;BND_DEPTH=28;MATE_BND_DEPTH=27	PR:SR	34,0:15,10	86,0:45,34
X	5708010	MantaBND:5:16050:16055:0:0:0:0	G	G]2:65975674]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:16050:16055:0:0:0:1;IMPRECISE;CIPOS=-286,286;EVENT=MantaBND:5:16050:16055:0:0:0:0;SOMATIC;SOMATICSCORE=11;JUNCTION_SOMATICSCORE=0;BND_DEPTH=15;MATE_BND_DEPTH=37	PR	28,0	109,2
2	65975674	MantaBND:5:16050:16055:0:0:0:1	T	T]X:5708010]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:16050:16055:0:0:0:0;IMPRECISE;CIPOS=-286,287;EVENT=MantaBND:5:16050:16055:0:0:0:0;SOMATIC;SOMATICSCORE=11;JUNCTION_SOMATICSCORE=0;BND_DEPTH=37;MATE_BND_DEPTH=15	PR	28,0	109,2
X	5708334	MantaBND:5:16050:16055:1:0:0:0	G	[2:65975038[G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:16050:16055:1:0:0:1;IMPRECISE;CIPOS=-384,385;EVENT=MantaBND:5:16050:16055:0:0:0:0;SOMATIC;SOMATICSCORE=11;JUNCTION_SOMATICSCORE=0;BND_DEPTH=14;MATE_BND_DEPTH=48	PR	49,0	141,3
2	65975038	MantaBND:5:16050:16055:1:0:0:1	T	[X:5708334[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:16050:16055:1:0:0:0;IMPRECISE;CIPOS=-223,224;EVENT=MantaBND:5:16050:16055:0:0:0:0;SOMATIC;SOMATICSCORE=11;JUNCTION_SOMATICSCORE=0;BND_DEPTH=48;MATE_BND_DEPTH=14	PR	49,0	141,3
1	171801580	MantaBND:5:16524:16526:0:0:0:0	C	C[11:24595515[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:16524:16526:0:0:0:1;IMPRECISE;CIPOS=-455,456;EVENT=MantaBND:5:16524:16526:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=28;BND_DEPTH=43;MATE_BND_DEPTH=39	PR	65,1	216,18
11	24595515	MantaBND:5:16524:16526:0:0:0:1	G	]1:171801580]G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:16524:16526:0:0:0:0;IMPRECISE;CIPOS=-223,224;EVENT=MantaBND:5:16524:16526:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=28;BND_DEPTH=39;MATE_BND_DEPTH=43	PR	65,1	216,18
1	171801895	MantaBND:5:16524:16526:1:0:0:0	A	]11:24596106]A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:16524:16526:1:0:0:1;IMPRECISE;CIPOS=-559,559;EVENT=MantaBND:5:16524:16526:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=41;MATE_BND_DEPTH=39	PR	52,2	174,4
11	24596106	MantaBND:5:16524:16526:1:0:0:1	G	G[1:171801895[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:16524:16526:1:0:0:0;IMPRECISE;CIPOS=-259,260;EVENT=MantaBND:5:16524:16526:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=39;MATE_BND_DEPTH=41	PR	52,2	174,4
11	77008785	MantaBND:5:19140:19142:0:0:0:0	C	C]5:157310413]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:19140:19142:0:0:0:1;IMPRECISE;CIPOS=-224,224;SOMATIC;SOMATICSCORE=53;BND_DEPTH=40;MATE_BND_DEPTH=59	PR	60,0	92,11
5	157310413	MantaBND:5:19140:19142:0:0:0:1	T	T]11:77008785]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:19140:19142:0:0:0:0;IMPRECISE;CIPOS=-420,421;SOMATIC;SOMATICSCORE=53;BND_DEPTH=59;MATE_BND_DEPTH=40	PR	60,0	92,11
6	2384787	MantaBND:5:19678:19693:0:0:0:0	T	T[14:72654574[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:19678:19693:0:0:0:1;IMPRECISE;CIPOS=-352,353;SOMATIC;SOMATICSCORE=10;BND_DEPTH=42;MATE_BND_DEPTH=48	PR	77,1	179,8
14	72654574	MantaBND:5:19678:19693:0:0:0:1	A	]6:2384787]A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:19678:19693:0:0:0:0;IMPRECISE;CIPOS=-314,315;SOMATIC;SOMATICSCORE=10;BND_DEPTH=48;MATE_BND_DEPTH=42	PR	77,1	179,8
X	1450356	MantaDEL:5:20999:65734:3:0:0	A	<DEL>	.	PASS	END=1453448;SVTYPE=DEL;SVLEN=-3092;IMPRECISE;CIPOS=-211,212;CIEND=-333,334;SOMATIC;SOMATICSCORE=37	PR	53,0	79,8
6	149031557	MantaBND:5:22983:22984:0:0:0:0	A	]10:49863082]A	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:22983:22984:0:0:0:1;IMPRECISE;CIPOS=-249,250;SOMATIC;SOMATICSCORE=37;BND_DEPTH=31;MATE_BND_DEPTH=33	PR	48,0	49,6
10	49863082	MantaBND:5:22983:22984:0:0:0:1	T	T[6:149031557[	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:22983:22984:0:0:0:0;IMPRECISE;CIPOS=-363,363;SOMATIC;SOMATICSCORE=37;BND_DEPTH=33;MATE_BND_DEPTH=31	PR	48,0	49,6
2	96545003	MantaBND:5:24646:24647:0:0:0:0	A	A]2:97886247]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:24646:24647:0:0:0:1;IMPRECISE;CIPOS=-436,437;SOMATIC;SOMATICSCORE=47;BND_DEPTH=50;MATE_BND_DEPTH=45	PR	84,0	154,10
2	97886247	MantaBND:5:24646:24647:0:0:0:1	G	G]2:96545003]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:24646:24647:0:0:0:0;IMPRECISE;CIPOS=-260,261;SOMATIC;SOMATICSCORE=47;BND_DEPTH=45;MATE_BND_DEPTH=50	PR	84,0	154,10
20	48982820	MantaBND:5:24775:24776:0:0:0:0	G	[7:57443997[G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:24775:24776:0:0:0:1;IMPRECISE;CIPOS=-387,388;SOMATIC;SOMATICSCORE=12;BND_DEPTH=56;MATE_BND_DEPTH=38	PR	81,1	244,12
7	57443997	MantaBND:5:24775:24776:0:0:0:1	A	[20:48982820[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:24775:24776:0:0:0:0;IMPRECISE;CIPOS=-222,223;SOMATIC;SOMATICSCORE=12;BND_DEPTH=38;MATE_BND_DEPTH=56	PR	81,1	244,12
16	31744702	MantaBND:5:25541:42689:0:0:0:0	T	T[12:58216793[	.	MaxDepth;MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:25541:42689:0:0:0:1;IMPRECISE;CIPOS=-292,293;SOMATIC;SOMATICSCORE=17;BND_DEPTH=47;MATE_BND_DEPTH=139	PR	184,1	581,10
12	58216793	MantaBND:5:25541:42689:0:0:0:1	C	]16:31744702]C	.	MaxDepth;MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:25541:42689:0:0:0:0;IMPRECISE;CIPOS=-392,392;SOMATIC;SOMATICSCORE=17;BND_DEPTH=139;MATE_BND_DEPTH=47	PR	184,1	581,10
20	26130200	MantaBND:5:25602:52484:0:0:0:0	A	A]16:70524962]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:25602:52484:0:0:0:1;IMPRECISE;CIPOS=-254,254;SOMATIC;SOMATICSCORE=10;BND_DEPTH=79;MATE_BND_DEPTH=37	PR	79,0	152,7
16	70524962	MantaBND:5:25602:52484:0:0:0:1	G	G]20:26130200]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:25602:52484:0:0:0:0;IMPRECISE;CIPOS=-224,225;SOMATIC;SOMATICSCORE=10;BND_DEPTH=37;MATE_BND_DEPTH=79	PR	79,0	152,7
19	28305202	MantaDEL:5:26084:58925:0:0:0	A	<DEL>	.	PASS	END=28306339;SVTYPE=DEL;SVLEN=-1137;IMPRECISE;CIPOS=-235,235;CIEND=-244,244;SOMATIC;SOMATICSCORE=36	PR	68,0	181,12
7	88073463	MantaBND:5:26645:26656:0:0:0:0	T	]2:55935885]T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:26645:26656:0:0:0:1;IMPRECISE;CIPOS=-325,325;SOMATIC;SOMATICSCORE=14;BND_DEPTH=41;MATE_BND_DEPTH=38	PR	47,0	135,9
2	55935885	MantaBND:5:26645:26656:0:0:0:1	A	A[7:88073463[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:26645:26656:0:0:0:0;IMPRECISE;CIPOS=-256,257;SOMATIC;SOMATICSCORE=14;BND_DEPTH=38;MATE_BND_DEPTH=41	PR	47,0	135,9
1	207449839	MantaBND:5:26927:26929:0:0:0:0	T	T[19:7820647[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:26927:26929:0:0:0:1;IMPRECISE;CIPOS=-298,298;SOMATIC;SOMATICSCORE=12;BND_DEPTH=38;MATE_BND_DEPTH=53	PR	82,1	249,8
19	7820647	MantaBND:5:26927:26929:0:0:0:1	T	]1:207449839]T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:26927:26929:0:0:0:0;IMPRECISE;CIPOS=-298,298;SOMATIC;SOMATICSCORE=12;BND_DEPTH=53;MATE_BND_DEPTH=38	PR	82,1	249,8
7	111249355	MantaBND:5:27192:27193:0:0:0:0	T	]19:57993854]TCCTT	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:27192:27193:0:0:0:1;SVINSLEN=4;SVINSSEQ=TCCT;SOMATIC;SOMATICSCORE=13;BND_DEPTH=29;MATE_BND_DEPTH=15	PR:SR	29,0:7,4	113,2:16,8
19	57993854	MantaBND:5:27192:27193:0:0:0:1	T	TTCCT[7:111249355[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:27192:27193:0:0:0:0;SVINSLEN=4;SVINSSEQ=TCCT;SOMATIC;SOMATICSCORE=13;BND_DEPTH=15;MATE_BND_DEPTH=29	PR:SR	29,0:7,4	113,2:16,8
7	118333975	MantaBND:5:27387:27388:0:0:0:0	T	T]19:48892401]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:27387:27388:0:0:0:1;IMPRECISE;CIPOS=-345,345;SOMATIC;SOMATICSCORE=39;BND_DEPTH=34;MATE_BND_DEPTH=35	PR	43,0	109,7
19	48892401	MantaBND:5:27387:27388:0:0:0:1	C	C]7:118333975]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:27387:27388:0:0:0:0;IMPRECISE;CIPOS=-210,211;SOMATIC;SOMATICSCORE=39;BND_DEPTH=35;MATE_BND_DEPTH=34	PR	43,0	109,7
7	131548090	MantaBND:5:27787:27792:0:3:0:0	T	T]15:96714040]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:27787:27792:0:3:0:1;CIPOS=0,3;HOMLEN=3;HOMSEQ=TCT;EVENT=MantaBND:5:27787:27792:0:3:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=35;BND_DEPTH=29;MATE_BND_DEPTH=30	PR:SR	41,0:4,5	205,0:49,13
15	96714037	MantaBND:5:27787:27792:0:3:0:1	G	G]7:131548093]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:27787:27792:0:3:0:0;CIPOS=0,3;HOMLEN=3;HOMSEQ=AGA;EVENT=MantaBND:5:27787:27792:0:3:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=35;BND_DEPTH=30;MATE_BND_DEPTH=29	PR:SR	41,0:4,5	205,0:49,13
7	131548376	MantaBND:5:27787:27792:1:0:0:0	T	[15:96713732[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:27787:27792:1:0:0:1;IMPRECISE;CIPOS=-409,409;EVENT=MantaBND:5:27787:27792:0:3:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=26;MATE_BND_DEPTH=40	PR	49,1	271,1
15	96713732	MantaBND:5:27787:27792:1:0:0:1	T	[7:131548376[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:27787:27792:1:0:0:0;IMPRECISE;CIPOS=-249,250;EVENT=MantaBND:5:27787:27792:0:3:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=40;MATE_BND_DEPTH=26	PR	49,1	271,1
1	90843861	MantaBND:5:27830:27832:1:0:0:0	G	[7:134614300[G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:27830:27832:1:0:0:1;IMPRECISE;CIPOS=-248,249;EVENT=MantaBND:5:27830:27832:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=43;MATE_BND_DEPTH=30	PR	40,1	129,4
7	134614300	MantaBND:5:27830:27832:1:0:0:1	C	[1:90843861[C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:27830:27832:1:0:0:0;IMPRECISE;CIPOS=-386,386;EVENT=MantaBND:5:27830:27832:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=30;MATE_BND_DEPTH=43	PR	40,1	129,4
7	134614339	MantaBND:5:27830:27832:2:0:0:0	G	G]1:90844432]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:27830:27832:2:0:0:1;IMPRECISE;CIPOS=-339,339;EVENT=MantaBND:5:27830:27832:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=11;BND_DEPTH=26;MATE_BND_DEPTH=31	PR	13,0	38,6
1	90844432	MantaBND:5:27830:27832:2:0:0:1	A	A]7:134614339]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:27830:27832:2:0:0:0;IMPRECISE;CIPOS=-247,247;EVENT=MantaBND:5:27830:27832:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=11;BND_DEPTH=31;MATE_BND_DEPTH=26	PR	13,0	38,6
14	45514503	MantaBND:5:29290:29295:0:0:0:0	A	[1:61932488[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:29290:29295:0:0:0:1;IMPRECISE;CIPOS=-256,256;SOMATIC;SOMATICSCORE=22;BND_DEPTH=32;MATE_BND_DEPTH=26	PR	40,0	124,6
1	61932488	MantaBND:5:29290:29295:0:0:0:1	A	[14:45514503[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:29290:29295:0:0:0:0;IMPRECISE;CIPOS=-455,456;SOMATIC;SOMATICSCORE=22;BND_DEPTH=26;MATE_BND_DEPTH=32	PR	40,0	124,6
7	68924122	MantaBND:5:29361:29362:0:0:0:0	A	[X:89480802[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:29361:29362:0:0:0:1;IMPRECISE;CIPOS=-383,384;EVENT=MantaBND:5:29361:29362:0:0:0:0;SOMATIC;SOMATICSCORE=12;JUNCTION_SOMATICSCORE=0;BND_DEPTH=14;MATE_BND_DEPTH=8	PR	5,1	15,2
X	89480802	MantaBND:5:29361:29362:0:0:0:1	A	[7:68924122[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:29361:29362:0:0:0:0;IMPRECISE;CIPOS=-222,223;EVENT=MantaBND:5:29361:29362:0:0:0:0;SOMATIC;SOMATICSCORE=12;JUNCTION_SOMATICSCORE=0;BND_DEPTH=8;MATE_BND_DEPTH=14	PR	5,1	15,2
X	89481383	MantaBND:5:29361:29362:1:0:0:0	A	A]7:68924083]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:29361:29362:1:0:0:1;IMPRECISE;CIPOS=-215,215;EVENT=MantaBND:5:29361:29362:0:0:0:0;SOMATIC;SOMATICSCORE=12;JUNCTION_SOMATICSCORE=0;BND_DEPTH=18;MATE_BND_DEPTH=10	PR	19,0	40,3
7	68924083	MantaBND:5:29361:29362:1:0:0:1	T	T]X:89481383]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:29361:29362:1:0:0:0;IMPRECISE;CIPOS=-238,239;EVENT=MantaBND:5:29361:29362:0:0:0:0;SOMATIC;SOMATICSCORE=12;JUNCTION_SOMATICSCORE=0;BND_DEPTH=10;MATE_BND_DEPTH=18	PR	19,0	40,3
10	33386484	MantaDEL:5:33520:35568:0:0:0	T	<DEL>	.	PASS	END=36118833;SVTYPE=DEL;SVLEN=-2732349;IMPRECISE;CIPOS=-375,376;CIEND=-245,246;SOMATIC;SOMATICSCORE=46	PR	61,0	126,10
10	33386461	MantaBND:5:35567:35568:0:0:0:0	T	T]1:87337054]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:35567:35568:0:0:0:1;IMPRECISE;CIPOS=-473,474;SOMATIC;SOMATICSCORE=89;BND_DEPTH=45;MATE_BND_DEPTH=48	PR	78,0	125,31
1	87337054	MantaBND:5:35567:35568:0:0:0:1	C	C]10:33386461]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:35567:35568:0:0:0:0;IMPRECISE;CIPOS=-446,446;SOMATIC;SOMATICSCORE=89;BND_DEPTH=48;MATE_BND_DEPTH=45	PR	78,0	125,31
X	1800860	MantaBND:5:36600:36623:0:2:0:0	C	[10:110489648[CC	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:36600:36623:0:2:0:1;SVINSLEN=1;SVINSSEQ=C;EVENT=MantaBND:5:36600:36623:0:2:0:0;SOMATIC;SOMATICSCORE=22;JUNCTION_SOMATICSCORE=13;BND_DEPTH=54;MATE_BND_DEPTH=30	PR:SR	14,0:2,3	19,0:2,11
10	110489648	MantaBND:5:36600:36623:0:2:0:1	G	[X:1800860[GG	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:36600:36623:0:2:0:0;SVINSLEN=1;SVINSSEQ=G;EVENT=MantaBND:5:36600:36623:0:2:0:0;SOMATIC;SOMATICSCORE=22;JUNCTION_SOMATICSCORE=13;BND_DEPTH=30;MATE_BND_DEPTH=54	PR:SR	14,0:2,3	19,0:2,11
X	1801040	MantaBND:5:36600:36623:1:0:0:0	G	G]10:110489944]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:36600:36623:1:0:0:1;IMPRECISE;CIPOS=-232,233;EVENT=MantaBND:5:36600:36623:0:2:0:0;SOMATIC;SOMATICSCORE=22;JUNCTION_SOMATICSCORE=0;BND_DEPTH=32;MATE_BND_DEPTH=23	PR	12,0	16,2
10	110489944	MantaBND:5:36600:36623:1:0:0:1	G	G]X:1801040]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:36600:36623:1:0:0:0;IMPRECISE;CIPOS=-235,236;EVENT=MantaBND:5:36600:36623:0:2:0:0;SOMATIC;SOMATICSCORE=22;JUNCTION_SOMATICSCORE=0;BND_DEPTH=23;MATE_BND_DEPTH=32	PR	12,0	16,2
11	1642961	MantaBND:5:37482:37483:0:0:0:0	A	[11:71276811[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:37482:37483:0:0:0:1;IMPRECISE;CIPOS=-291,291;EVENT=MantaBND:5:37482:37483:0:0:0:0;SOMATIC;SOMATICSCORE=13;JUNCTION_SOMATICSCORE=0;BND_DEPTH=41;MATE_BND_DEPTH=34	PR	50,1	133,4
11	71276811	MantaBND:5:37482:37483:0:0:0:1	T	[11:1642961[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:37482:37483:0:0:0:0;IMPRECISE;CIPOS=-348,348;EVENT=MantaBND:5:37482:37483:0:0:0:0;SOMATIC;SOMATICSCORE=13;JUNCTION_SOMATICSCORE=0;BND_DEPTH=34;MATE_BND_DEPTH=41	PR	50,1	133,4
11	1643563	MantaBND:5:37482:37483:1:0:0:0	T	T]11:71276565]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:37482:37483:1:0:0:1;IMPRECISE;CIPOS=-217,218;EVENT=MantaBND:5:37482:37483:0:0:0:0;SOMATIC;SOMATICSCORE=13;JUNCTION_SOMATICSCORE=0;BND_DEPTH=41;MATE_BND_DEPTH=37	PR	53,0	187,5
11	71276565	MantaBND:5:37482:37483:1:0:0:1	G	G]11:1643563]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:37482:37483:1:0:0:0;IMPRECISE;CIPOS=-345,345;EVENT=MantaBND:5:37482:37483:0:0:0:0;SOMATIC;SOMATICSCORE=13;JUNCTION_SOMATICSCORE=0;BND_DEPTH=37;MATE_BND_DEPTH=41	PR	53,0	187,5
11	22516921	MantaBND:5:37897:37898:0:0:0:0	A	A[18:19709874[	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:37897:37898:0:0:0:1;IMPRECISE;CIPOS=-385,385;SOMATIC;SOMATICSCORE=41;BND_DEPTH=23;MATE_BND_DEPTH=39	PR	54,0	172,10
18	19709874	MantaBND:5:37897:37898:0:0:0:1	T	]11:22516921]T	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:37897:37898:0:0:0:0;IMPRECISE;CIPOS=-238,238;SOMATIC;SOMATICSCORE=41;BND_DEPTH=39;MATE_BND_DEPTH=23	PR	54,0	172,10
11	59973975	MantaBND:5:39064:39065:0:0:0:0	T	]1:119964314]T	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:39064:39065:0:0:0:1;IMPRECISE;CIPOS=-355,355;EVENT=MantaBND:5:39064:39065:0:0:0:0;SOMATIC;SOMATICSCORE=75;JUNCTION_SOMATICSCORE=0;BND_DEPTH=21;MATE_BND_DEPTH=37	PR	45,0	57,3
1	119964314	MantaBND:5:39064:39065:0:0:0:1	C	C[11:59973975[	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:39064:39065:0:0:0:0;IMPRECISE;CIPOS=-258,259;EVENT=MantaBND:5:39064:39065:0:0:0:0;SOMATIC;SOMATICSCORE=75;JUNCTION_SOMATICSCORE=0;BND_DEPTH=37;MATE_BND_DEPTH=21	PR	45,0	57,3
1	119963999	MantaBND:5:39064:39065:1:0:0:0	T	]11:59973960]T	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:39064:39065:1:0:0:1;CIPOS=0,12;HOMLEN=12;HOMSEQ=GTATATATATAT;EVENT=MantaBND:5:39064:39065:0:0:0:0;SOMATIC;SOMATICSCORE=75;JUNCTION_SOMATICSCORE=66;BND_DEPTH=32;MATE_BND_DEPTH=21	PR:SR	34,0:16,0	41,1:29,21
11	59973960	MantaBND:5:39064:39065:1:0:0:1	A	A[1:119963999[	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:39064:39065:1:0:0:0;CIPOS=0,12;HOMLEN=12;HOMSEQ=TGTATATATATA;EVENT=MantaBND:5:39064:39065:0:0:0:0;SOMATIC;SOMATICSCORE=75;JUNCTION_SOMATICSCORE=66;BND_DEPTH=21;MATE_BND_DEPTH=32	PR:SR	34,0:16,0	41,1:29,21
12	61912242	MantaBND:5:39641:39642:0:0:0:0	T	]11:90673778]T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:39641:39642:0:0:0:1;IMPRECISE;CIPOS=-229,229;SOMATIC;SOMATICSCORE=15;BND_DEPTH=38;MATE_BND_DEPTH=47	PR	54,0	161,9
11	90673778	MantaBND:5:39641:39642:0:0:0:1	G	G[12:61912242[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:39641:39642:0:0:0:0;IMPRECISE;CIPOS=-282,283;SOMATIC;SOMATICSCORE=15;BND_DEPTH=47;MATE_BND_DEPTH=38	PR	54,0	161,9
11	99996513	MantaBND:5:39712:39719:0:0:0:0	T	[5:38894981[T	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:39712:39719:0:0:0:1;IMPRECISE;CIPOS=-260,261;SOMATIC;SOMATICSCORE=45;BND_DEPTH=45;MATE_BND_DEPTH=42	PR	72,0	172,10
5	38894981	MantaBND:5:39712:39719:0:0:0:1	C	[11:99996513[C	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:39712:39719:0:0:0:0;IMPRECISE;CIPOS=-250,251;SOMATIC;SOMATICSCORE=45;BND_DEPTH=42;MATE_BND_DEPTH=45	PR	72,0	172,10
12	42500076	MantaDEL:5:42285:42291:0:0:0	G	<DEL>	.	MinSomaticScore	END=42538022;SVTYPE=DEL;SVLEN=-37946;IMPRECISE;CIPOS=-297,297;CIEND=-255,255;SOMATIC;SOMATICSCORE=17	PR	87,1	178,10
12	42481377	MantaBND:5:42290:44244:0:0:0:0	A	A[13:19298176[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:42290:44244:0:0:0:1;IMPRECISE;CIPOS=-246,247;SOMATIC;SOMATICSCORE=19;BND_DEPTH=51;MATE_BND_DEPTH=49	PR	85,1	231,11
13	19298176	MantaBND:5:42290:44244:0:0:0:1	G	]12:42481377]G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:42290:44244:0:0:0:0;IMPRECISE;CIPOS=-275,276;SOMATIC;SOMATICSCORE=19;BND_DEPTH=49;MATE_BND_DEPTH=51	PR	85,1	231,11
7	26241688	MantaBND:5:43198:43225:0:0:0:0	G	G]6:116774744]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:43198:43225:0:0:0:1;IMPRECISE;CIPOS=-241,242;SOMATIC;SOMATICSCORE=25;BND_DEPTH=29;MATE_BND_DEPTH=54	PR	74,0	175,8
6	116774744	MantaBND:5:43198:43225:0:0:0:1	T	T]7:26241688]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:43198:43225:0:0:0:0;IMPRECISE;CIPOS=-397,398;SOMATIC;SOMATICSCORE=25;BND_DEPTH=54;MATE_BND_DEPTH=29	PR	74,0	175,8
12	129771777	MantaINS:5:44111:44111:0:2:0	A	<INS>	.	PASS	END=129771779;SVTYPE=INS;LEFT_SVINSSEQ=TCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACA;RIGHT_SVINSSEQ=AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA;SOMATIC;SOMATICSCORE=58	PR:SR	0,0:27,0	1,0:32,41
2	227910502	MantaBND:5:46927:46928:0:0:0:0	A	A]21:42009754]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:46927:46928:0:0:0:1;IMPRECISE;CIPOS=-396,396;SOMATIC;SOMATICSCORE=42;BND_DEPTH=34;MATE_BND_DEPTH=24	PR	36,0	79,8
21	42009754	MantaBND:5:46927:46928:0:0:0:1	A	A]2:227910502]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:46927:46928:0:0:0:0;IMPRECISE;CIPOS=-234,235;SOMATIC;SOMATICSCORE=42;BND_DEPTH=24;MATE_BND_DEPTH=34	PR	36,0	79,8
1	189531261	MantaDUP:TANDEM:5:47166:47166:6:1:0	T	<DUP:TANDEM>	.	MinSomaticScore	END=189531349;SVTYPE=DUP;SVLEN=88;CIPOS=0,8;CIEND=0,8;HOMLEN=8;HOMSEQ=ATTATATA;SOMATIC;SOMATICSCORE=15	PR:SR	4,0:5,0	10,0:25,14
14	104560086	MantaDEL:5:47950:47950:2:0:0	GGGAGTGTGGGTGGGGCTTGGAGTGTGGGCGGGGCTGTGGAGTGTGGGTGGGGCTGT	G	.	PASS	END=104560142;SVTYPE=DEL;SVLEN=-56;CIGAR=1M56D;CIPOS=0,4;HOMLEN=4;HOMSEQ=GGAG;SOMATIC;SOMATICSCORE=34	PR:SR	6,0:16,0	0,0:0,31
15	23706879	MantaBND:5:48364:48365:0:0:0:0	C	]20:37274667]C	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:48364:48365:0:0:0:1;SOMATIC;SOMATICSCORE=59;BND_DEPTH=45;MATE_BND_DEPTH=41	PR:SR	64,0:58,0	265,10:215,26
20	37274667	MantaBND:5:48364:48365:0:0:0:1	A	A[15:23706879[	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:48364:48365:0:0:0:0;SOMATIC;SOMATICSCORE=59;BND_DEPTH=41;MATE_BND_DEPTH=45	PR:SR	64,0:58,0	265,10:215,26
15	23706677	MantaBND:5:48363:48364:0:0:0:0	A	[15:23685459[A	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:48363:48364:0:0:0:1;IMPRECISE;CIPOS=-340,341;SOMATIC;SOMATICSCORE=51;BND_DEPTH=49;MATE_BND_DEPTH=26	PR	59,0	241,23
15	23685459	MantaBND:5:48363:48364:0:0:0:1	T	[15:23706677[T	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:48363:48364:0:0:0:0;IMPRECISE;CIPOS=-394,394;SOMATIC;SOMATICSCORE=51;BND_DEPTH=26;MATE_BND_DEPTH=49	PR	59,0	241,23
15	23685607	MantaBND:5:48363:48365:0:0:0:0	C	[20:37274468[C	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:48363:48365:0:0:0:1;CIPOS=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=70;BND_DEPTH=54;MATE_BND_DEPTH=41	PR:SR	61,0:43,0	210,20:118,27
20	37274467	MantaBND:5:48363:48365:0:0:0:1	G	[15:23685608[G	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:48363:48365:0:0:0:0;CIPOS=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=70;BND_DEPTH=41;MATE_BND_DEPTH=54	PR:SR	61,0:43,0	210,20:118,27
15	23686045	MantaINS:5:48363:48363:1:0:1	A	ATCTTCTCCTCCTGGCCCCACATCTTCTCCTCCTGGTCCCGCATCTTCTCCTGCTCCCATATCTTCTCCTCCTGCTCCTGCATCTTCTCCTGCTCTTGCATCTTCTCGTGTTCCCACAGCTTCTCCTTCTGTTCCGGCAGCCTCTGCTGCTCCCACATCTTCTCTTCCTGCTCCCACATCTTCTCCTCCTGCTCCCACATCT	.	MinSomaticScore	END=23686045;SVTYPE=INS;SVLEN=201;CIGAR=1M201I;CIPOS=0,3;HOMLEN=3;HOMSEQ=TCT;SOMATIC;SOMATICSCORE=28	PR:SR	6,0:18,2	5,1:81,5
15	23992700	MantaBND:5:48516:48517:0:0:0:0	G	G]15:23831661]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:48516:48517:0:0:0:1;CIPOS=0,3;HOMLEN=3;HOMSEQ=TTG;SOMATIC;SOMATICSCORE=105;BND_DEPTH=36;MATE_BND_DEPTH=42	PR:SR	77,0:31,0	207,47:137,44
15	23831658	MantaBND:5:48516:48517:0:0:0:1	G	G]15:23992703]	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:48516:48517:0:0:0:0;CIPOS=0,3;HOMLEN=3;HOMSEQ=CAA;SOMATIC;SOMATICSCORE=105;BND_DEPTH=42;MATE_BND_DEPTH=36	PR:SR	77,0:31,0	207,47:137,44
7	142033623	MantaDUP:TANDEM:5:49251:49262:1:0:0	A	<DUP:TANDEM>	.	MinSomaticScore	END=142156553;SVTYPE=DUP;SVLEN=122930;IMPRECISE;CIPOS=-328,329;CIEND=-297,298;SOMATIC;SOMATICSCORE=14	PR	75,1	417,10
17	26029970	MantaDEL:5:54045:54045:1:0:1	GCACTTTGGCAGGCCAAGGTGGGTGATCACTTAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAATAAATTAGTAGGGCATGGTGGTGCATGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCACAGGATTAGAGCTGCCAACAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCCCCATATTGGCCAGGCTGGTCTCAAACTCCTGGCCTGAAGTGATCCACC	G	.	MinSomaticScore	END=26030237;SVTYPE=DEL;SVLEN=-267;CIGAR=1M267D;CIPOS=0,3;HOMLEN=3;HOMSEQ=CAC;SOMATIC;SOMATICSCORE=10	PR:SR	37,0:19,6	92,3:43,24
17	26029970	MantaDEL:5:54045:54045:0:0:1	GCACTTTGGCAGGCCAAGGTGGGTGATCACTTAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAATAAATTAGTAGGGCATGGTGGTGCATGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCACAGGATTAGAGCTGCCAACAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCCCCATATTGGCCAGGCTGGTCTCAAACTCCTGGCCTGAAGTGATCCACC	G	.	MinSomaticScore	END=26030237;SVTYPE=DEL;SVLEN=-267;CIGAR=1M267D;CIPOS=0,3;HOMLEN=3;HOMSEQ=CAC;SOMATIC;SOMATICSCORE=10	PR:SR	37,0:19,6	92,3:43,24
Y	23153841	MantaBND:5:58695:58799:0:0:0:0	A	]X:49167215]A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:58695:58799:0:0:0:1;IMPRECISE;CIPOS=-301,302;SOMATIC;SOMATICSCORE=20;BND_DEPTH=27;MATE_BND_DEPTH=21	PR	45,0	61,5
X	49167215	MantaBND:5:58695:58799:0:0:0:1	T	T[Y:23153841[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:58695:58799:0:0:0:0;IMPRECISE;CIPOS=-311,312;SOMATIC;SOMATICSCORE=20;BND_DEPTH=21;MATE_BND_DEPTH=27	PR	45,0	61,5
19	39522283	MantaDUP:TANDEM:5:59878:59878:8:0:0	T	<DUP:TANDEM>	.	MinSomaticScore	END=39522361;SVTYPE=DUP;SVLEN=78;CIPOS=0,1;CIEND=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=28	PR:SR	26,0:26,1	73,0:76,8
2	108797721	MantaBND:5:64174:64175:0:0:0:0	A	A[10:12736174[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:64174:64175:0:0:0:1;IMPRECISE;CIPOS=-381,381;EVENT=MantaBND:5:64174:64175:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=51;BND_DEPTH=38;MATE_BND_DEPTH=60	PR	48,0	24,11
10	12736174	MantaBND:5:64174:64175:0:0:0:1	A	]2:108797721]A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:64174:64175:0:0:0:0;IMPRECISE;CIPOS=-253,253;EVENT=MantaBND:5:64174:64175:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=51;BND_DEPTH=60;MATE_BND_DEPTH=38	PR	48,0	24,11
2	108797679	MantaBND:5:64174:64175:1:0:0:0	A	]10:12736766]A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:64174:64175:1:0:0:1;IMPRECISE;CIPOS=-355,355;EVENT=MantaBND:5:64174:64175:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=38;MATE_BND_DEPTH=31	PR	46,2	65,6
10	12736766	MantaBND:5:64174:64175:1:0:0:1	T	T[2:108797679[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:64174:64175:1:0:0:0;IMPRECISE;CIPOS=-259,259;EVENT=MantaBND:5:64174:64175:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=31;MATE_BND_DEPTH=38	PR	46,2	65,6
21	9540563	MantaDEL:5:64228:64228:2:1:0	TCCTCGCCGCTGTCCGCCTCTCAGCCGCTGTGCCCCTCTCCGCCGCTGTCCGCCTTTCCGCCGCGCCGCCGCTGTCCGCCTCTCCGCCG	T	.	MinSomaticScore	END=9540651;SVTYPE=DEL;SVLEN=-88;CIGAR=1M88D;CIPOS=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=23	PR:SR	1,0:11,0	18,0:34,9
X	95868063	MantaBND:5:66812:66813:0:0:0:0	G	G[5:16951555[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:66812:66813:0:0:0:1;IMPRECISE;CIPOS=-394,394;EVENT=MantaBND:5:66812:66813:0:0:0:0;SOMATIC;SOMATICSCORE=1;JUNCTION_SOMATICSCORE=0;BND_DEPTH=17;MATE_BND_DEPTH=28	PR	50,1	109,2
5	16951555	MantaBND:5:66812:66813:0:0:0:1	G	]X:95868063]G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:66812:66813:0:0:0:0;IMPRECISE;CIPOS=-241,241;EVENT=MantaBND:5:66812:66813:0:0:0:0;SOMATIC;SOMATICSCORE=1;JUNCTION_SOMATICSCORE=0;BND_DEPTH=28;MATE_BND_DEPTH=17	PR	50,1	109,2
5	16952127	MantaBND:5:66812:66813:1:0:0:0	A	A[X:95868261[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:66812:66813:1:0:0:1;IMPRECISE;CIPOS=-246,247;EVENT=MantaBND:5:66812:66813:0:0:0:0;SOMATIC;SOMATICSCORE=1;JUNCTION_SOMATICSCORE=45;BND_DEPTH=36;MATE_BND_DEPTH=13	PR	48,0	108,10
X	95868261	MantaBND:5:66812:66813:1:0:0:1	G	]5:16952127]G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5:66812:66813:1:0:0:0;IMPRECISE;CIPOS=-405,406;EVENT=MantaBND:5:66812:66813:0:0:0:0;SOMATIC;SOMATICSCORE=1;JUNCTION_SOMATICSCORE=45;BND_DEPTH=13;MATE_BND_DEPTH=36	PR	48,0	108,10
9	87717321	MantaBND:5:67492:67494:0:0:0:0	G	]X:145539058]G	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:67492:67494:0:0:0:1;IMPRECISE;CIPOS=-223,224;SOMATIC;SOMATICSCORE=30;BND_DEPTH=41;MATE_BND_DEPTH=23	PR	38,1	123,10
X	145539058	MantaBND:5:67492:67494:0:0:0:1	G	G[9:87717321[	.	PASS	SVTYPE=BND;MATEID=MantaBND:5:67492:67494:0:0:0:0;IMPRECISE;CIPOS=-493,494;SOMATIC;SOMATICSCORE=30;BND_DEPTH=23;MATE_BND_DEPTH=41	PR	38,1	123,10
3	59838742	MantaBND:1992:4:6:0:0:0:0	T	T[11:108578536[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:1992:4:6:0:0:0:1;IMPRECISE;CIPOS=-267,267;SOMATIC;SOMATICSCORE=10;BND_DEPTH=42;MATE_BND_DEPTH=48	PR	71,1	253,8
11	108578536	MantaBND:1992:4:6:0:0:0:1	A	]3:59838742]A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:1992:4:6:0:0:0:0;IMPRECISE;CIPOS=-289,290;SOMATIC;SOMATICSCORE=10;BND_DEPTH=48;MATE_BND_DEPTH=42	PR	71,1	253,8
10	77858915	MantaBND:4204:0:11:0:0:0:0	A	]1:35007318]A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:4204:0:11:0:0:0:1;IMPRECISE;CIPOS=-301,302;EVENT=MantaBND:4204:0:11:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=11;BND_DEPTH=47;MATE_BND_DEPTH=43	PR	59,1	135,8
1	35007318	MantaBND:4204:0:11:0:0:0:1	C	C[10:77858915[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:4204:0:11:0:0:0:0;IMPRECISE;CIPOS=-346,346;EVENT=MantaBND:4204:0:11:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=11;BND_DEPTH=43;MATE_BND_DEPTH=47	PR	59,1	135,8
1	35007021	MantaBND:4204:0:11:1:0:0:0	A	]10:77859562]A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:4204:0:11:1:0:0:1;IMPRECISE;CIPOS=-565,566;EVENT=MantaBND:4204:0:11:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=37;MATE_BND_DEPTH=47	PR	46,7	66,21
10	77859562	MantaBND:4204:0:11:1:0:0:1	T	T[1:35007021[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:4204:0:11:1:0:0:0;IMPRECISE;CIPOS=-310,311;EVENT=MantaBND:4204:0:11:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=47;MATE_BND_DEPTH=37	PR	46,7	66,21
1	45380606	MantaDEL:5444:0:1:0:0:0	CCACTTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCCCGCCCATTATTTTAAATTTTATTTTATTTTTTGGTCAGGCGTGGTGGCTCACACCTGTAATCCCAG	C	.	PASS	END=45380722;SVTYPE=DEL;SVLEN=-116;CIGAR=1M116D;CIPOS=0,5;HOMLEN=5;HOMSEQ=CACTT;SOMATIC;SOMATICSCORE=46	PR:SR	27,0:56,1	33,0:96,14
11	85983417	MantaBND:5479:1:12:0:0:0:0	C	C[15:81535825[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5479:1:12:0:0:0:1;IMPRECISE;CIPOS=-299,300;SOMATIC;SOMATICSCORE=16;BND_DEPTH=60;MATE_BND_DEPTH=23	PR	48,1	104,8
15	81535825	MantaBND:5479:1:12:0:0:0:1	C	]11:85983417]C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:5479:1:12:0:0:0:0;IMPRECISE;CIPOS=-299,300;SOMATIC;SOMATICSCORE=16;BND_DEPTH=23;MATE_BND_DEPTH=60	PR	48,1	104,8
7	142103830	MantaDEL:5727:1:44:0:0:0	C	<DEL>	.	MinSomaticScore	END=142143295;SVTYPE=DEL;SVLEN=-39465;IMPRECISE;CIPOS=-297,298;CIEND=-294,295;SOMATIC;SOMATICSCORE=18	PR	82,1	397,19
7	142108622	MantaDEL:5727:10:13:0:0:0	C	<DEL>	.	MinSomaticScore	END=142128416;SVTYPE=DEL;SVLEN=-19794;IMPRECISE;CIPOS=-281,281;CIEND=-251,251;SOMATIC;SOMATICSCORE=18	PR	96,1	552,22
1	62584313	MantaBND:7127:0:1:0:0:0:0	T	T]1:62585618]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:7127:0:1:0:0:0:1;CIPOS=0,9;HOMLEN=9;HOMSEQ=ATTTTTGAG;SOMATIC;SOMATICSCORE=10;BND_DEPTH=42;MATE_BND_DEPTH=41	PR:SR	70,0:53,0	161,2:121,2
1	62585609	MantaBND:7127:0:1:0:0:0:1	C	C]1:62584322]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:7127:0:1:0:0:0:0;CIPOS=0,9;HOMLEN=9;HOMSEQ=CTCAAAAAT;SOMATIC;SOMATICSCORE=10;BND_DEPTH=41;MATE_BND_DEPTH=42	PR:SR	70,0:53,0	161,2:121,2
19	29223860	MantaBND:8731:1:3:0:0:0:0	A	A[3:181765930[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:8731:1:3:0:0:0:1;IMPRECISE;CIPOS=-485,485;SOMATIC;SOMATICSCORE=12;BND_DEPTH=41;MATE_BND_DEPTH=43	PR	53,1	194,14
3	181765930	MantaBND:8731:1:3:0:0:0:1	T	]19:29223860]T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:8731:1:3:0:0:0:0;IMPRECISE;CIPOS=-257,258;SOMATIC;SOMATICSCORE=12;BND_DEPTH=43;MATE_BND_DEPTH=41	PR	53,1	194,14
1	91561585	MantaDEL:9959:0:1:0:0:0	A	<DEL>	.	MinSomaticScore	END=93514544;SVTYPE=DEL;SVLEN=-1952959;IMPRECISE;CIPOS=-222,223;CIEND=-398,398;SOMATIC;SOMATICSCORE=17	PR	73,0	114,6
1	117144568	MantaBND:12239:0:1:0:0:0:0	T	T]2:91942528]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:12239:0:1:0:0:0:1;IMPRECISE;CIPOS=-217,218;SOMATIC;SOMATICSCORE=10;BND_DEPTH=48;MATE_BND_DEPTH=76	PR	106,0	263,9
2	91942528	MantaBND:12239:0:1:0:0:0:1	T	T]1:117144568]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:12239:0:1:0:0:0:0;IMPRECISE;CIPOS=-326,326;SOMATIC;SOMATICSCORE=10;BND_DEPTH=76;MATE_BND_DEPTH=48	PR	106,0	263,9
5	49820060	MantaBND:12559:0:1:0:0:0:0	T	T]1:121173724]	.	PASS	SVTYPE=BND;MATEID=MantaBND:12559:0:1:0:0:0:1;IMPRECISE;CIPOS=-218,219;SOMATIC;SOMATICSCORE=42;BND_DEPTH=47;MATE_BND_DEPTH=51	PR	70,0	147,8
1	121173724	MantaBND:12559:0:1:0:0:0:1	G	G]5:49820060]	.	PASS	SVTYPE=BND;MATEID=MantaBND:12559:0:1:0:0:0:0;IMPRECISE;CIPOS=-382,383;SOMATIC;SOMATICSCORE=42;BND_DEPTH=51;MATE_BND_DEPTH=47	PR	70,0	147,8
4	49530736	MantaDEL:13251:8:8:4:9:0	AGGCACATGCCACCACACCTGGCTAAATTTTTTTATTTTTAGTAGAGACAGGGTATCACCATG	A	.	MaxDepth;MinSomaticScore	END=49530798;SVTYPE=DEL;SVLEN=-62;CIGAR=1M62D;SOMATIC;SOMATICSCORE=27	PR:SR	22,0:125,0	80,0:441,10
22	33759249	MantaDEL:13571:6:9:0:0:0	A	<DEL>	.	PASS	END=33838398;SVTYPE=DEL;SVLEN=-79149;SVINSLEN=7;SVINSSEQ=AACTACT;SOMATIC;SOMATICSCORE=85	PR:SR	55,0:46,0	174,36:132,23
2	96517422	MantaBND:14161:3:6:2:0:0:0	A	[2:89104121[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:14161:3:6:2:0:0:1;IMPRECISE;CIPOS=-299,300;SOMATIC;SOMATICSCORE=28;BND_DEPTH=82;MATE_BND_DEPTH=108	PR	228,0	601,18
2	89104121	MantaBND:14161:3:6:2:0:0:1	T	[2:96517422[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:14161:3:6:2:0:0:0;IMPRECISE;CIPOS=-277,277;SOMATIC;SOMATICSCORE=28;BND_DEPTH=108;MATE_BND_DEPTH=82	PR	228,0	601,18
1	169324206	MantaDEL:16768:0:0:3:0:0	TATAATTATATATGTTTATATATAATATAATTATATATGTTTATATATAATATAATTATATATTATATATTATAGATATAATATATAATATACTATATATTATAGATATAATATATA	TT	.	MinSomaticScore	END=169324322;SVTYPE=DEL;SVLEN=-116;CIGAR=1M1I116D;SOMATIC;SOMATICSCORE=10	PR:SR	1,0:3,0	0,0:0,22
1	169440706	MantaDEL:16794:0:0:0:1:0	CACACACACACACACACACACACACACACACACACACACACAATTTAATTAGCTGGGTGTGGTGGTGTACACATGTAGTCCCTGCTACTCAGGAGACTGAGGTGGGAGGATCACTTGAACCTAGAAGATCAAGGCTGCAGTGATCCGTGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGACAGACTCTGTCTCAAAAAACAAACGTGTGTGTGTGTGTGTGTGTGTGTATATAT	C	.	MinSomaticScore	END=169440943;SVTYPE=DEL;SVLEN=-237;CIGAR=1M237D;CIPOS=0,10;HOMLEN=10;HOMSEQ=ACACACACAC;SOMATIC;SOMATICSCORE=12	PR:SR	36,3:14,0	105,11:20,27
1	169440706	MantaDEL:16794:0:1:0:1:0	CACACACACACACACACACACACACACACACACACACACACAATTTAATTAGCTGGGTGTGGTGGTGTACACATGTAGTCCCTGCTACTCAGGAGACTGAGGTGGGAGGATCACTTGAACCTAGAAGATCAAGGCTGCAGTGATCCGTGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGACAGACTCTGTCTCAAAAAACAAACGTGTGTGTGTGTGTGTGTGTGTGTATATAT	C	.	MinSomaticScore	END=169440943;SVTYPE=DEL;SVLEN=-237;CIGAR=1M237D;CIPOS=0,10;HOMLEN=10;HOMSEQ=ACACACACAC;SOMATIC;SOMATICSCORE=12	PR:SR	36,3:14,0	105,11:20,27
3	145608881	MantaBND:19471:3:8:0:0:0:0	T	T]13:63776082]	.	MaxDepth	SVTYPE=BND;MATEID=MantaBND:19471:3:8:0:0:0:1;IMPRECISE;CIPOS=-352,352;SOMATIC;SOMATICSCORE=42;BND_DEPTH=225;MATE_BND_DEPTH=44	PR	75,0	242,11
13	63776082	MantaBND:19471:3:8:0:0:0:1	T	T]3:145608881]	.	MaxDepth	SVTYPE=BND;MATEID=MantaBND:19471:3:8:0:0:0:0;IMPRECISE;CIPOS=-264,265;SOMATIC;SOMATICSCORE=42;BND_DEPTH=44;MATE_BND_DEPTH=225	PR	75,0	242,11
1	207981229	MantaDEL:21275:0:1:0:0:0	A	<DEL>	.	PASS	END=208014817;SVTYPE=DEL;SVLEN=-33588;CIPOS=0,4;CIEND=0,4;HOMLEN=4;HOMSEQ=GAGG;SOMATIC;SOMATICSCORE=53	PR:SR	51,0:46,0	112,14:92,9
1	224646602	MantaDUP:TANDEM:23183:0:1:0:1:0	G	<DUP:TANDEM>	.	PASS	END=224800120;SVTYPE=DUP;SVLEN=153518;SVINSLEN=37;SVINSSEQ=CAAAACTTACTATAGCAGTTCTGTGAGCTGCTCTAGC;SOMATIC;SOMATICSCORE=117	PR:SR	53,0:48,0	232,83:197,56
1	224782795	MantaDEL:23239:0:1:0:0:0	C	<DEL>	.	PASS	END=224786033;SVTYPE=DEL;SVLEN=-3238;SVINSLEN=19;SVINSSEQ=CTATAGTAGAACTTCTTTT;SOMATIC;SOMATICSCORE=173	PR:SR	88,0:69,0	261,106:190,65
1	232243189	MantaDEL:24183:0:0:0:0:0	ATATCTGTATATACAGATAGTACATACTAATCTGTACAGTATTAGTATGTAC	A	.	MinSomaticScore	END=232243240;SVTYPE=DEL;SVLEN=-51;CIGAR=1M51D;CIPOS=0,19;HOMLEN=19;HOMSEQ=TATCTGTATATACAGATAG;SOMATIC;SOMATICSCORE=29	PR:SR	6,0:36,0	25,0:71,12
2	171007669	MantaBND:26120:1:2:0:0:0:0	T	T[8:5583694[	.	PASS	SVTYPE=BND;MATEID=MantaBND:26120:1:2:0:0:0:1;IMPRECISE;CIPOS=-211,211;EVENT=MantaBND:26120:1:2:0:0:0:0;SOMATIC;SOMATICSCORE=39;JUNCTION_SOMATICSCORE=0;BND_DEPTH=38;MATE_BND_DEPTH=30	PR	58,0	183,4
8	5583694	MantaBND:26120:1:2:0:0:0:1	C	]2:171007669]C	.	PASS	SVTYPE=BND;MATEID=MantaBND:26120:1:2:0:0:0:0;IMPRECISE;CIPOS=-278,278;EVENT=MantaBND:26120:1:2:0:0:0:0;SOMATIC;SOMATICSCORE=39;JUNCTION_SOMATICSCORE=0;BND_DEPTH=30;MATE_BND_DEPTH=38	PR	58,0	183,4
8	5583717	MantaBND:26120:1:2:1:0:0:0	A	A[2:171007117[	.	PASS	SVTYPE=BND;MATEID=MantaBND:26120:1:2:1:0:0:1;IMPRECISE;CIPOS=-278,278;EVENT=MantaBND:26120:1:2:0:0:0:0;SOMATIC;SOMATICSCORE=39;JUNCTION_SOMATICSCORE=0;BND_DEPTH=35;MATE_BND_DEPTH=39	PR	51,0	164,4
2	171007117	MantaBND:26120:1:2:1:0:0:1	C	]8:5583717]C	.	PASS	SVTYPE=BND;MATEID=MantaBND:26120:1:2:1:0:0:0;IMPRECISE;CIPOS=-221,222;EVENT=MantaBND:26120:1:2:0:0:0:0;SOMATIC;SOMATICSCORE=39;JUNCTION_SOMATICSCORE=0;BND_DEPTH=39;MATE_BND_DEPTH=35	PR	51,0	164,4
1	248040601	MantaDEL:26513:0:0:0:0:0	GCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACAAGCTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAAAAAAAAAAAAATAGAAAAATTAGCTGGGCATGGTGGCAGGAGCCTGTAATCCCAGCTATTCTGGAGGTGGAGACAGGAGAATTGCTTGAACCCTGGAGGCGGAGGTTGCAGTGAGCCAATATCTCACCACTGTACTCCAGCCCAGTGCGAGACTCCATCTCAAAAAAGAAAAAAGACCTCAAACAACACTTCTCTCTCTCTTTTAGCTGCTTGTTATGGTTCCTATACATGGAACAATTATACTGGCCTCACTGTGTTATGGTAAATATTTAAGGTCATATTTGATATTGCTGGTTTGAATTCAGCTTTTCCATTTAAATACATTATAATGATGATGATGAAATCATGATAATATTTAACTTATTTTTAAAGTATATTCTGTACCTTTCCAACAAAAAGGTTAAAAGTCATTGAAGGCTAACCTTACTGCCTTCTTTGTATCACTGTCTTCTAAATAATTATTATGTCTGGGTA	G	.	MinSomaticScore	END=248041189;SVTYPE=DEL;SVLEN=-588;CIGAR=1M588D;CIPOS=0,38;HOMLEN=38;HOMSEQ=CAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGC;SOMATIC;SOMATICSCORE=13	PR:SR	53,0:39,0	209,0:130,10
1	248815240	MantaBND:26555:0:1:1:0:0:0	A	A]1:248603772]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:26555:0:1:1:0:0:1;IMPRECISE;CIPOS=-262,262;SOMATIC;SOMATICSCORE=16;BND_DEPTH=48;MATE_BND_DEPTH=57	PR	74,1	255,15
1	248603772	MantaBND:26555:0:1:1:0:0:1	T	T]1:248815240]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:26555:0:1:1:0:0:0;IMPRECISE;CIPOS=-250,251;SOMATIC;SOMATICSCORE=16;BND_DEPTH=57;MATE_BND_DEPTH=48	PR	74,1	255,15
8	131248114	MantaDUP:TANDEM:27514:1:2:0:0:0	C	<DUP:TANDEM>	.	PASS	END=131274645;SVTYPE=DUP;SVLEN=26531;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=AA;SOMATIC;SOMATICSCORE=57	PR:SR	51,0:35,0	221,21:102,14
14	106784764	MantaDEL:31574:2:3:0:0:0	C	<DEL>	.	MinSomaticScore	END=106809353;SVTYPE=DEL;SVLEN=-24589;IMPRECISE;CIPOS=-383,383;CIEND=-227,227;SOMATIC;SOMATICSCORE=23	PR	117,0	492,10
2	85570653	MantaBND:36015:0:1:0:0:0:0	G	G]2:85543377]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:36015:0:1:0:0:0:1;IMPRECISE;CIPOS=-335,335;EVENT=MantaBND:36015:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=51;MATE_BND_DEPTH=43	PR	70,2	172,12
2	85543377	MantaBND:36015:0:1:0:0:0:1	C	C]2:85570653]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:36015:0:1:0:0:0:0;IMPRECISE;CIPOS=-418,418;EVENT=MantaBND:36015:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=43;MATE_BND_DEPTH=51	PR	70,2	172,12
2	85543786	MantaBND:36015:0:1:1:0:0:0	C	[2:85570138[C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:36015:0:1:1:0:0:1;IMPRECISE;CIPOS=-458,459;EVENT=MantaBND:36015:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=12;BND_DEPTH=41;MATE_BND_DEPTH=47	PR	72,1	166,9
2	85570138	MantaBND:36015:0:1:1:0:0:1	G	[2:85543786[G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:36015:0:1:1:0:0:0;IMPRECISE;CIPOS=-280,280;EVENT=MantaBND:36015:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=12;BND_DEPTH=47;MATE_BND_DEPTH=41	PR	72,1	166,9
10	38981817	MantaBND:36840:5:6:0:0:0:0	T	T[Y:13540895[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:36840:5:6:0:0:0:1;IMPRECISE;CIPOS=-237,237;SOMATIC;SOMATICSCORE=13;BND_DEPTH=47;MATE_BND_DEPTH=44	PR	67,0	108,8
Y	13540895	MantaBND:36840:5:6:0:0:0:1	T	]10:38981817]T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:36840:5:6:0:0:0:0;IMPRECISE;CIPOS=-399,400;SOMATIC;SOMATICSCORE=13;BND_DEPTH=44;MATE_BND_DEPTH=47	PR	67,0	108,8
7	135542750	MantaBND:37853:0:3:0:0:0:0	C	C[2:104694556[	.	PASS	SVTYPE=BND;MATEID=MantaBND:37853:0:3:0:0:0:1;IMPRECISE;CIPOS=-262,262;SOMATIC;SOMATICSCORE=44;BND_DEPTH=39;MATE_BND_DEPTH=35	PR	65,0	236,14
2	104694556	MantaBND:37853:0:3:0:0:0:1	A	]7:135542750]A	.	PASS	SVTYPE=BND;MATEID=MantaBND:37853:0:3:0:0:0:0;IMPRECISE;CIPOS=-520,520;SOMATIC;SOMATICSCORE=44;BND_DEPTH=35;MATE_BND_DEPTH=39	PR	65,0	236,14
2	144623831	MantaDEL:42004:0:0:0:0:0	AACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTAGAGAGGATGCGGAGAAATAGGAACACTTTTAC	A	.	PASS	END=144623934;SVTYPE=DEL;SVLEN=-103;CIGAR=1M103D;CIPOS=0,2;HOMLEN=2;HOMSEQ=AC;SOMATIC;SOMATICSCORE=31	PR:SR	25,0:77,0	56,0:197,8
3	125415914	MantaDUP:TANDEM:43431:2:7:0:0:0	A	<DUP:TANDEM>	.	MinSomaticScore	END=125438268;SVTYPE=DUP;SVLEN=22354;IMPRECISE;CIPOS=-238,239;CIEND=-466,466;SOMATIC;SOMATICSCORE=12	PR	71,1	231,14
20	26109782	MantaBND:43754:1:4:1:0:0:0	A	A]17:21522468]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:43754:1:4:1:0:0:1;IMPRECISE;CIPOS=-473,474;SOMATIC;SOMATICSCORE=18;BND_DEPTH=64;MATE_BND_DEPTH=86	PR	146,1	419,15
17	21522468	MantaBND:43754:1:4:1:0:0:1	A	A]20:26109782]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:43754:1:4:1:0:0:0;IMPRECISE;CIPOS=-360,360;SOMATIC;SOMATICSCORE=18;BND_DEPTH=86;MATE_BND_DEPTH=64	PR	146,1	419,15
10	84855736	MantaBND:52399:0:1:0:0:0:0	A	A]2:241603069]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:52399:0:1:0:0:0:1;IMPRECISE;CIPOS=-339,339;SOMATIC;SOMATICSCORE=11;BND_DEPTH=37;MATE_BND_DEPTH=41	PR	60,1	121,7
2	241603069	MantaBND:52399:0:1:0:0:0:1	T	T]10:84855736]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:52399:0:1:0:0:0:0;IMPRECISE;CIPOS=-226,226;SOMATIC;SOMATICSCORE=11;BND_DEPTH=41;MATE_BND_DEPTH=37	PR	60,1	121,7
3	15179277	MantaBND:54004:1:2:0:0:0:0	T	T]11:3575402]	.	PASS	SVTYPE=BND;MATEID=MantaBND:54004:1:2:0:0:0:1;IMPRECISE;CIPOS=-231,231;SOMATIC;SOMATICSCORE=44;BND_DEPTH=52;MATE_BND_DEPTH=43	PR	62,0	139,10
11	3575402	MantaBND:54004:1:2:0:0:0:1	C	C]3:15179277]	.	PASS	SVTYPE=BND;MATEID=MantaBND:54004:1:2:0:0:0:0;IMPRECISE;CIPOS=-514,514;SOMATIC;SOMATICSCORE=44;BND_DEPTH=43;MATE_BND_DEPTH=52	PR	62,0	139,10
3	24565106	MantaBND:54784:0:1:0:0:0:0	T	[3:24566182[T	.	PASS	SVTYPE=BND;MATEID=MantaBND:54784:0:1:0:0:0:1;CIPOS=0,3;HOMLEN=3;HOMSEQ=CAC;SOMATIC;SOMATICSCORE=245;BND_DEPTH=53;MATE_BND_DEPTH=46	PR:SR	90,0:61,0	236,193:197,101
3	24566179	MantaBND:54784:0:1:0:0:0:1	T	[3:24565109[T	.	PASS	SVTYPE=BND;MATEID=MantaBND:54784:0:1:0:0:0:0;CIPOS=0,3;HOMLEN=3;HOMSEQ=GAG;SOMATIC;SOMATICSCORE=245;BND_DEPTH=46;MATE_BND_DEPTH=53	PR:SR	90,0:61,0	236,193:197,101
3	25400843	MantaBND:54940:0:0:0:0:0:0	C	C]3:25400984]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:54940:0:0:0:0:0:1;IMPRECISE;CIPOS=-600,601;SOMATIC;SOMATICSCORE=23;BND_DEPTH=44;MATE_BND_DEPTH=42	PR	52,0	387,8
3	25400984	MantaBND:54940:0:0:0:0:0:1	T	T]3:25400843]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:54940:0:0:0:0:0:0;IMPRECISE;CIPOS=-540,541;SOMATIC;SOMATICSCORE=23;BND_DEPTH=42;MATE_BND_DEPTH=44	PR	52,0	387,8
12	72666892	MantaBND:54940:0:1:0:0:0:0	G	]3:25400602]TGAATCCATCAG	.	PASS	SVTYPE=BND;MATEID=MantaBND:54940:0:1:0:0:0:1;SVINSLEN=11;SVINSSEQ=TGAATCCATCA;SOMATIC;SOMATICSCORE=78;BND_DEPTH=29;MATE_BND_DEPTH=43	PR:SR	67,0:43,0	380,41:267,44
3	25400602	MantaBND:54940:0:1:0:0:0:1	G	GTGAATCCATCA[12:72666892[	.	PASS	SVTYPE=BND;MATEID=MantaBND:54940:0:1:0:0:0:0;SVINSLEN=11;SVINSSEQ=TGAATCCATCA;SOMATIC;SOMATICSCORE=78;BND_DEPTH=43;MATE_BND_DEPTH=29	PR:SR	67,0:43,0	380,41:267,44
10	60477422	MantaBND:54940:1:2:0:0:0:0	G	GC]12:72667074]	.	PASS	SVTYPE=BND;MATEID=MantaBND:54940:1:2:0:0:0:1;SVINSLEN=1;SVINSSEQ=C;SOMATIC;SOMATICSCORE=98;BND_DEPTH=40;MATE_BND_DEPTH=41	PR:SR	58,0:54,0	122,4:114,53
12	72667074	MantaBND:54940:1:2:0:0:0:1	G	GG]10:60477422]	.	PASS	SVTYPE=BND;MATEID=MantaBND:54940:1:2:0:0:0:0;SVINSLEN=1;SVINSSEQ=G;SOMATIC;SOMATICSCORE=98;BND_DEPTH=41;MATE_BND_DEPTH=40	PR:SR	58,0:54,0	122,4:114,53
3	25400963	MantaBND:54940:0:1:1:0:0:0	C	C]12:72667258]	.	PASS	SVTYPE=BND;MATEID=MantaBND:54940:0:1:1:0:0:1;IMPRECISE;CIPOS=-574,575;SOMATIC;SOMATICSCORE=39;BND_DEPTH=42;MATE_BND_DEPTH=35	PR	70,0	343,12
12	72667258	MantaBND:54940:0:1:1:0:0:1	A	A]3:25400963]	.	PASS	SVTYPE=BND;MATEID=MantaBND:54940:0:1:1:0:0:0;IMPRECISE;CIPOS=-299,300;SOMATIC;SOMATICSCORE=39;BND_DEPTH=35;MATE_BND_DEPTH=42	PR	70,0	343,12
3	25400638	MantaBND:54940:0:2:0:0:0:0	T	T]10:60477626]	.	PASS	SVTYPE=BND;MATEID=MantaBND:54940:0:2:0:0:0:1;IMPRECISE;CIPOS=-488,488;SOMATIC;SOMATICSCORE=67;BND_DEPTH=49;MATE_BND_DEPTH=40	PR	78,0	381,49
10	60477626	MantaBND:54940:0:2:0:0:0:1	A	A]3:25400638]	.	PASS	SVTYPE=BND;MATEID=MantaBND:54940:0:2:0:0:0:0;IMPRECISE;CIPOS=-320,320;SOMATIC;SOMATICSCORE=67;BND_DEPTH=40;MATE_BND_DEPTH=49	PR	78,0	381,49
3	25401059	MantaBND:54940:0:2:1:0:0:0	G	G[10:60477224[	.	PASS	SVTYPE=BND;MATEID=MantaBND:54940:0:2:1:0:0:1;SOMATIC;SOMATICSCORE=79;BND_DEPTH=42;MATE_BND_DEPTH=33	PR:SR	68,0:44,0	350,41:266,48
10	60477224	MantaBND:54940:0:2:1:0:0:1	T	]3:25401059]T	.	PASS	SVTYPE=BND;MATEID=MantaBND:54940:0:2:1:0:0:0;SOMATIC;SOMATICSCORE=79;BND_DEPTH=33;MATE_BND_DEPTH=42	PR:SR	68,0:44,0	350,41:266,48
3	26664498	MantaBND:55108:0:0:0:0:0:0	G	G]3:26663922]	.	PASS	SVTYPE=BND;MATEID=MantaBND:55108:0:0:0:0:0:1;CIPOS=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=139;BND_DEPTH=19;MATE_BND_DEPTH=36	PR:SR	44,0:34,0	227,140:169,96
3	26663921	MantaBND:55108:0:0:0:0:0:1	G	G]3:26664499]	.	PASS	SVTYPE=BND;MATEID=MantaBND:55108:0:0:0:0:0:0;CIPOS=0,1;HOMLEN=1;HOMSEQ=G;SOMATIC;SOMATICSCORE=139;BND_DEPTH=36;MATE_BND_DEPTH=19	PR:SR	44,0:34,0	227,140:169,96
3	49889530	MantaDEL:58059:0:0:0:2:0	AGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCACGGTGGCGAGCGCCTGTAATCCCAGCTACTCGGGAGGTTGACGCAGGAGAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATCGGACCATTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTACCTCAAAAATAAATAATAACACAGGATAAAAAAGTTAATGGAATAGAGGCAATATATGAAGAGATAATGGCTGATAATTTTCCAGAACTGATTAAAGAAATTGCTCCACACGGCCAGGCGCG	A	.	MinSomaticScore	END=49889917;SVTYPE=DEL;SVLEN=-387;CIGAR=1M387D;CIPOS=0,42;HOMLEN=42;HOMSEQ=GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGC;SOMATIC;SOMATICSCORE=14	PR:SR	31,0:34,3	110,1:80,12
3	52694775	MantaDEL:58313:0:0:0:0:0	TGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGGGTGAGCCACAGCACCTGACTAGGAACTGTATTTTGAGACTCTAAGAAGTAATTGTATTTTTGAGAAATTCACCCATCACTGCTTCTCTGTATTCCAGCAAAAGGCCTATGTAGATAAGTTACAGAAGAAAGGGGAATATTCTGCAATGTGCTTCTCACAATTTAGCTGTAGAAAAGAGTTGTGATCCCCTCTACTATTCTTTTTTCTCTTTTCAAACATGTCTTTTTATTTTCTGTCTTTCATTTTTTTTTGAGATGGAGTCTCATTCTGTCGCCCAGTCTGGAGTACAGTGGCGCCATCTCGGCTCACTGCACCCTCCACCTCCTGGGTTCAAGCGATTATCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCATGTGCCACCTGCCTAGCTAATTTTTGTATTTTTGGTAGAGACAGGGTTTTACCATGTTGGTCAGGCTGTTCTTGAACTCCTAACCTCAAGTGATCCTCCC	T	.	MinSomaticScore	END=52695287;SVTYPE=DEL;SVLEN=-512;CIGAR=1M512D;CIPOS=0,32;HOMLEN=32;HOMSEQ=GCCTTGGCCTCCCAAAGTGCTGGGATTACAGG;SOMATIC;SOMATICSCORE=13	PR:SR	75,1:46,1	196,1:154,16
3	53162251	MantaDEL:58422:0:1:0:0:0	TTGCAGTGAGCCGAGATAGTGCCACTGCACTCCAGCCTGAGCAACAGAGTGAGACTCCATCTCGAAAACAAAAAACAAAACACCATGTGTACATACTTATGTTAACCTCAAAGTTACCACTGTCTAAGAAACTTAATGTTCCAGGCCATATCCATGTCTCCTAATTGGTTTGAATAAAGGTTGCAGCTAATGAAACTGAGGTTGCTTACGCCACCCAGTATTTGCCACACACTGCAGTCCTTATTAGCAACACAGCCTTCATTTACTTCTGCAAAGAACTTTACAGCTTTTGTTTTAAGACAGGGTCTCACTCTGTTGCTCAGGCTGGAG	T	.	MinSomaticScore	END=53162580;SVTYPE=DEL;SVLEN=-329;CIGAR=1M329D;CIPOS=0,7;HOMLEN=7;HOMSEQ=TGCAGTG;SOMATIC;SOMATICSCORE=27	PR:SR	69,0:49,0	220,2:184,7
3	53283013	MantaDEL:58448:0:1:0:0:0	CACTCTGTCACCCAGGCTGGAGTGCAGTGGTACAATCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCATGCCTCAGCCTCCCGAGTAGCTGGGGTTACAGGTGCCTGCTACCATGCCCGACTCATTTTTTTTGTATTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCTGGGCTGTCTCGAACTCCTGACCTCAAATGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCTATCACACCTGGCCTAAAAATTTGTTTTTAAAAGAAAAAGGGCCTGGAGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCAAGGCTGGCGGGAGGATCACCTGAGGTCAGGAATTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCCCTACTGAAAATGCAAAAATTAGCTGGGCAGTGGTGGCATGCACCTGTAATCCCAGCTACTTGGGAGACTGAGGCAGAAAATCGCTTGAACCTAGGATGTGGAGGTTACAGTGAGCCAAGATCGCCGCCCCACTGCACTCCAGCCTGGGTGACAGAGCGAG	C	.	MinSomaticScore	END=53283590;SVTYPE=DEL;SVLEN=-577;CIGAR=1M577D;CIPOS=0,9;HOMLEN=9;HOMSEQ=ACTCTGTCA;SOMATIC;SOMATICSCORE=29	PR:SR	52,0:40,3	200,1:127,18
3	60132754	MantaDEL:59262:0:1:0:0:0	T	<DEL>	.	PASS	END=60204542;SVTYPE=DEL;SVLEN=-71788;SOMATIC;SOMATICSCORE=78	PR:SR	58,0:50,0	182,39:160,21
3	60872123	MantaDEL:59386:0:1:0:0:0	A	<DEL>	.	PASS	END=61013212;SVTYPE=DEL;SVLEN=-141089;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=GC;SOMATIC;SOMATICSCORE=100	PR:SR	69,0:70,0	220,50:175,29
3	75809695	MantaINS:61125:0:0:0:1:0	G	GTGCTAAAGGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGACCTCATACCCGTGCTAAAAGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGATCTCAAACCCA	.	MinSomaticScore	END=75809695;SVTYPE=INS;SVLEN=124;CIGAR=1M124I;CIPOS=0,51;HOMLEN=51;HOMSEQ=TGCTAAAGGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGA;SOMATIC;SOMATICSCORE=16	PR:SR	0,0:20,2	0,0:106,15
3	75809695	MantaINS:61127:0:0:0:0:0	G	GTGCTAAAGGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGACCTCATACCCGTGCTAAAAGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGATCTCAAACCCA	.	MinSomaticScore	END=75809695;SVTYPE=INS;SVLEN=124;CIGAR=1M124I;CIPOS=0,51;HOMLEN=51;HOMSEQ=TGCTAAAGGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGA;SOMATIC;SOMATICSCORE=16	PR:SR	0,0:20,2	0,0:106,15
3	75809695	MantaINS:61128:0:0:0:1:0	G	GTGCTAAAGGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGACCTCATACCCGTGCTAAAAGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGATCTCAAACCCA	.	MinSomaticScore	END=75809695;SVTYPE=INS;SVLEN=124;CIGAR=1M124I;CIPOS=0,51;HOMLEN=51;HOMSEQ=TGCTAAAGGGAAGCTTACAGCTGCAGATGCTTAAATTAAAAAGAAGAAAGA;SOMATIC;SOMATICSCORE=16	PR:SR	0,0:20,2	0,0:106,15
13	108539835	MantaBND:66443:1:4:0:0:0:0	T	]8:116021995]T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:66443:1:4:0:0:0:1;IMPRECISE;CIPOS=-444,445;SOMATIC;SOMATICSCORE=17;BND_DEPTH=45;MATE_BND_DEPTH=42	PR	75,1	178,8
8	116021995	MantaBND:66443:1:4:0:0:0:1	T	T[13:108539835[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:66443:1:4:0:0:0:0;IMPRECISE;CIPOS=-255,256;SOMATIC;SOMATICSCORE=17;BND_DEPTH=42;MATE_BND_DEPTH=45	PR	75,1	178,8
3	128604818	MantaDEL:66849:0:1:0:0:0	CCACTGCACTCCAGCCTGGGTGACAGAGTGTGACTTTGTCTAAAAAAAAAAAATAAAATATACTGTGTTCATTTGTTTAAAAATAATAAATCCATTACATGTTAACATAATATTTTTAATGAAAAATATTTTGTTTTTGTTTTTCCGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTCGACT	C	.	PASS	END=128605018;SVTYPE=DEL;SVLEN=-200;CIGAR=1M200D;CIPOS=0,7;HOMLEN=7;HOMSEQ=CACTGCA;SOMATIC;SOMATICSCORE=33	PR:SR	28,0:37,0	96,0:122,12
3	186442174	MantaDEL:73479:0:1:0:0:0	T	<DEL>	.	PASS	END=186513631;SVTYPE=DEL;SVLEN=-71457;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=CT;SOMATIC;SOMATICSCORE=45	PR:SR	64,0:67,0	218,7:162,8
9	76898208	MantaBND:76739:0:1:1:0:0:0	T	]4:14776892]T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:76739:0:1:1:0:0:1;IMPRECISE;CIPOS=-373,374;SOMATIC;SOMATICSCORE=28;BND_DEPTH=31;MATE_BND_DEPTH=36	PR	31,0	70,6
4	14776892	MantaBND:76739:0:1:1:0:0:1	C	C[9:76898208[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:76739:0:1:1:0:0:0;IMPRECISE;CIPOS=-279,280;SOMATIC;SOMATICSCORE=28;BND_DEPTH=36;MATE_BND_DEPTH=31	PR	31,0	70,6
4	55088419	MantaDEL:80533:0:0:0:0:0	CACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTTACTGCAGCCTTGACCTCCTGGGCTTGGGTGATTCTTCCACCTCAGCCTCCCCGAGTAGTTGAGACTACAGGTGCCTGCCACCACGCCCAGCTAATGTTTTGTATTTTTAGTAGAGATGGGGTTCCACTATGTCACCCAGGCTGGTCTTGAACACCTGAACTCAAGGAATCCACCCGCCTCAGCCTCCCAGAGTGCTGGGATTACTGGCATGAGACACTGCACCTGGCCACAAAAGTCTATTTAAGAGTACAAATGAGGGAAAAATAATCTAGTTTTGCCAATTATATTATCACTAAAGCTCTTATGTTGTTGTAAAAAGTCACCAGACATATTGTATAATGTCACATCCGTCTTTCTTTCTTTCTCTCTCTCCTTCCTTCTTTTTTTTTTTTTTTCTTTCTTTCCTCCCTCCCTCCTTCCCTGCTTCCTTCCTTCCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTAGAGACAGGGTCTT	C	.	MinSomaticScore	END=55088950;SVTYPE=DEL;SVLEN=-531;CIGAR=1M531D;CIPOS=0,29;HOMLEN=29;HOMSEQ=ACTCTGTCACCCAGGCTGGAGTGCAGTGG;SOMATIC;SOMATICSCORE=29	PR:SR	67,0:32,1	208,2:127,12
4	66211954	MantaDUP:TANDEM:81760:0:1:0:2:0	A	<DUP:TANDEM>	.	PASS	END=66212037;SVTYPE=DUP;SVLEN=83;CIPOS=0,4;CIEND=0,4;HOMLEN=4;HOMSEQ=TTGT;SOMATIC;SOMATICSCORE=34	PR:SR	50,0:59,0	127,0:131,18
4	88291815	MantaDEL:84422:0:0:0:2:0	TGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCTCCACGCCTGGCCTAGATATTATTATTATTATTATTATTATTATTATTATTATTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGTAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCTACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCC	T	.	MinSomaticScore	END=88292150;SVTYPE=DEL;SVLEN=-335;CIGAR=1M335D;CIPOS=0,40;HOMLEN=40;HOMSEQ=GCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCC;SOMATIC;SOMATICSCORE=27	PR:SR	32,0:26,2	139,4:93,19
4	187996320	MantaINS:95672:1:1:0:0:0	C	CATCTAAGAAACCGACAGACATTAACTTAATCAAATGATCAAGGTGAAAATTACCAAATAGG	.	PASS	END=187996320;SVTYPE=INS;SVLEN=61;CIGAR=1M61I;CIPOS=0,62;HOMLEN=62;HOMSEQ=ATCTAAGAAACCGACAGACATTAACTTAATCAAATGATCAAGGTGAAAATTACCAAATAGGA;SOMATIC;SOMATICSCORE=40	PR:SR	0,0:15,0	0,0:18,57
4	187996320	MantaINS:95672:0:0:0:0:0	C	CATCTAAGAAACCGACAGACATTAACTTAATCAAATGATCAAGGTGAAAATTACCAAATAGG	.	PASS	END=187996320;SVTYPE=INS;SVLEN=61;CIGAR=1M61I;CIPOS=0,62;HOMLEN=62;HOMSEQ=ATCTAAGAAACCGACAGACATTAACTTAATCAAATGATCAAGGTGAAAATTACCAAATAGGA;SOMATIC;SOMATICSCORE=40	PR:SR	0,0:15,0	0,0:18,57
4	189745334	MantaDEL:95919:0:0:0:4:0	AAGCAGACACACAGGGATGCACACACACAGGGAAGTACACACAGGGAAGCAGTCCCACAGTGAAGCACACACAGGGAGGCGAACACACAAAGGGAAGCACACAGGGATGCACACAGGGACGCACACACAGAGGGATGCACACACACAGGGAAGCGCACACAGGGAAGCACACAGGGAGGCACACACACAGGGAAGCAGACACACAGGGAAGCACGCATAGG	AGT	.	MinSomaticScore	END=189745554;SVTYPE=DEL;SVLEN=-220;CIGAR=1M2I220D;SOMATIC;SOMATICSCORE=15	PR:SR	20,3:22,0	70,5:36,8
5	682537	MantaDEL:96501:0:0:0:3:0	AGGGCCAGGGGTCTGCCCCTTGGGCCTGGAGCCTGTTACTAGGGCCTGGGGTCTGTCACTATGGCCAGGGGCCTGTCAGTCACTAGGGCCAGGACCTGTCCCTTGGGCCTGGAGCCTATTACTAGGACCTGGGGTCTGTCACTAGGGCCAGGGGTCTGCCCCTTGGGCCTGGAGCCTGTTACTAGGACCTGGGGTCTGTCACTAGC	ACA	.	MinSomaticScore	END=682742;SVTYPE=DEL;SVLEN=-205;CIGAR=1M2I205D;SOMATIC;SOMATICSCORE=21	PR:SR	31,2:48,7	45,0:66,26
5	12731000	MantaDEL:97716:0:1:0:1:0	C	<DEL>	.	PASS	END=12762945;SVTYPE=DEL;SVLEN=-31945;SVINSLEN=7;SVINSSEQ=TAAATAA;SOMATIC;SOMATICSCORE=39	PR:SR	51,0:48,0	123,3:104,4
8	23438282	MantaBND:97754:1:4:0:0:0:0	C	C[12:46293207[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:97754:1:4:0:0:0:1;IMPRECISE;CIPOS=-387,387;SOMATIC;SOMATICSCORE=22;BND_DEPTH=28;MATE_BND_DEPTH=38	PR	53,0	136,8
12	46293207	MantaBND:97754:1:4:0:0:0:1	G	]8:23438282]G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:97754:1:4:0:0:0:0;IMPRECISE;CIPOS=-250,250;SOMATIC;SOMATICSCORE=22;BND_DEPTH=38;MATE_BND_DEPTH=28	PR	53,0	136,8
5	28787996	MantaDEL:99228:0:1:0:0:0	T	<DEL>	.	PASS	END=28963095;SVTYPE=DEL;SVLEN=-175099;SOMATIC;SOMATICSCORE=122	PR:SR	62,0:59,0	58,25:51,15
13	49362239	MantaBND:100667:0:2:0:0:0:0	A	A[5:44540765[	.	PASS	SVTYPE=BND;MATEID=MantaBND:100667:0:2:0:0:0:1;CIPOS=0,2;HOMLEN=2;HOMSEQ=CT;SOMATIC;SOMATICSCORE=31;BND_DEPTH=38;MATE_BND_DEPTH=37	PR:SR	74,0:53,0	162,2:120,3
5	44540765	MantaBND:100667:0:2:0:0:0:1	C	]13:49362239]C	.	PASS	SVTYPE=BND;MATEID=MantaBND:100667:0:2:0:0:0:0;CIPOS=0,2;HOMLEN=2;HOMSEQ=TC;SOMATIC;SOMATICSCORE=31;BND_DEPTH=37;MATE_BND_DEPTH=38	PR:SR	74,0:53,0	162,2:120,3
7	130154755	MantaBND:103365:0:1:0:0:0:0	N	N[5:79970935[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:103365:0:1:0:0:0:1;IMPRECISE;CIPOS=-279,279;SOMATIC;SOMATICSCORE=10;BND_DEPTH=0;MATE_BND_DEPTH=43	PR	41,0	73,6
5	79970935	MantaBND:103365:0:1:0:0:0:1	T	]7:130154755]T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:103365:0:1:0:0:0:0;IMPRECISE;CIPOS=-275,275;SOMATIC;SOMATICSCORE=10;BND_DEPTH=43;MATE_BND_DEPTH=0	PR	41,0	73,6
5	140089011	MantaDEL:107997:0:1:0:0:0	T	<DEL>	.	MinSomaticScore	END=140097145;SVTYPE=DEL;SVLEN=-8134;IMPRECISE;CIPOS=-183,184;CIEND=-342,343;SOMATIC;SOMATICSCORE=11	PR	92,1	108,8
5	140088512	MantaDUP:TANDEM:107997:0:2:0:0:0	G	<DUP:TANDEM>	.	MinSomaticScore	END=140096836;SVTYPE=DUP;SVLEN=8324;IMPRECISE;CIPOS=-242,242;CIEND=-383,383;SOMATIC;SOMATICSCORE=14	PR	78,0	153,11
5	172514191	MantaDEL:110734:0:1:0:1:0	CCACCTGCCTCGGCCTCCCAAAGTCCTGGGATTACAGGCATGAGTCACTGCGCCCAGCCTAATTTTTGTATTTTTAGTGCAGACGGGGTTTCACCATGTCAGCCAGACAGGTCTTGAGCTCCCGACCTCAGGTGATCTGCCCGCCTCGGCTTCCCAAAATGCTGGGATTACAGGCATGAGCCATCGCACCTGGCCTACATCTAGTAATTTTAAAAGTATGCAGCTGTTGGCTGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCCAACATGGTGAAATTCCGTCTCTGCTAAAAATACAAAAATTAGCTGGGCATGGTAGTGCGCACCTGTAGTCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCAGGGAGTCAGAGGTTGTGGTGAGCCAAGATCGCCCCATAGCATTCCAGTCTGGCAGACTGGAGTCTCAAAAAGAAAAAGGATGCTTCTGGGTATGGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCGGGTGGAT	C	.	MinSomaticScore	END=172514767;SVTYPE=DEL;SVLEN=-576;CIGAR=1M576D;CIPOS=0,9;HOMLEN=9;HOMSEQ=CACCTGCCT;SOMATIC;SOMATICSCORE=29	PR:SR	60,0:43,0	102,0:76,8
5	180375074	MantaDEL:111600:0:1:0:0:0	A	<DEL>	.	MinSomaticScore	END=180430515;SVTYPE=DEL;SVLEN=-55441;IMPRECISE;CIPOS=-484,484;CIEND=-287,288;SOMATIC;SOMATICSCORE=21	PR	42,1	51,14
6	7065788	MantaDEL:112587:0:0:0:2:0	GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACGATCCTGGCTAATACGGTGAAACCCTGCCTCTGCTAAAAAATACAGAAAAAAAATTAGCTGGGCGTGGTGGCACACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCTGGGAGGCGGAGCTTGCAGTGGGCTCAGATAGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAATAAAAATAAAAATAAAGTGAATCTCCTTGGATGAGTTTTAACATAGACTTGCCATATGCTCAATCCCGTTTTATGGCTAATGGTGGCGTTCCAGGGTGCTAGTATATCTTATTAAGAGATAGAAACGGTTTTTCGTACCATGTTAAATACGAGAACCAGAAGGCACAGATTAGGGCCAGGCACGGTTT	G	.	PASS	END=7066256;SVTYPE=DEL;SVLEN=-468;CIGAR=1M468D;CIPOS=0,41;HOMLEN=41;HOMSEQ=CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGG;SOMATIC;SOMATICSCORE=31	PR:SR	47,0:26,2	122,0:71,18
6	7444252	MantaDEL:112651:0:0:0:1:0	TGCCTGTAAGCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCAGTTGAGGTCAGGAGTTGGAGACCAGCCTGACCAACATGGTGAAATCCCATCTCTACTAAATACAAAAAATTAGCCGGGTGTGGTGGACATGCCTGTAATCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCTCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATTGTGCTATTGCACTCCAGTCTGGGCAACAAGAGCGAAACACTGTCCAAAAAAAAAAAAGCCGGGCGCAGTGGCTTATG	TT	.	PASS	END=7444544;SVTYPE=DEL;SVLEN=-292;CIGAR=1M1I292D;SOMATIC;SOMATICSCORE=32	PR:SR	35,1:25,2	129,3:84,19
6	34701279	MantaBND:116731:0:0:0:0:0:0	A	[6:34700831[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:116731:0:0:0:0:0:1;IMPRECISE;CIPOS=-344,345;SOMATIC;SOMATICSCORE=14;BND_DEPTH=42;MATE_BND_DEPTH=0	PR	19,0	45,5
6	34700831	MantaBND:116731:0:0:0:0:0:1	C	[6:34701279[C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:116731:0:0:0:0:0:0;IMPRECISE;CIPOS=-267,268;SOMATIC;SOMATICSCORE=14;BND_DEPTH=0;MATE_BND_DEPTH=42	PR	19,0	45,5
7	57171862	MantaDEL:120072:0:1:0:0:0	A	<DEL>	.	MinSomaticScore	END=62736383;SVTYPE=DEL;SVLEN=-5564521;IMPRECISE;CIPOS=-260,261;CIEND=-423,423;EVENT=MantaDEL:120072:0:1:0:0:0;SOMATIC;SOMATICSCORE=21;JUNCTION_SOMATICSCORE=0	PR	59,1	226,1
7	57171318	MantaDUP:TANDEM:120072:0:1:1:0:0	T	<DUP:TANDEM>	.	MinSomaticScore	END=62736043;SVTYPE=DUP;SVLEN=5564725;IMPRECISE;CIPOS=-224,224;CIEND=-335,336;EVENT=MantaDEL:120072:0:1:0:0:0;SOMATIC;SOMATICSCORE=21;JUNCTION_SOMATICSCORE=1	PR	46,0	236,6
6	69623222	MantaDEL:120956:0:0:0:0:0	ACTCCTCTGAGACAAAACTTCCAGAGGAACGATAAGACAGCAACATTCGTGGTTCACGAAAATCCGCTGTTCTGCAGCCACCGCTGCTGATACAGGCAGACAGGGTCTGGAGTGGACCTCTAGCAAAC	AT	.	MinSomaticScore	END=69623349;SVTYPE=DEL;SVLEN=-127;CIGAR=1M1I127D;SOMATIC;SOMATICSCORE=27	PR:SR	26,0:57,0	54,0:127,5
7	142211466	MantaDUP:TANDEM:124008:4:5:0:0:0	T	<DUP:TANDEM>	.	MinSomaticScore	END=142256195;SVTYPE=DUP;SVLEN=44729;IMPRECISE;CIPOS=-280,280;CIEND=-269,270;SOMATIC;SOMATICSCORE=15	PR	59,0	364,8
8	30899071	MantaBND:126056:0:4:0:0:0:0	C	C[6:123340960[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:126056:0:4:0:0:0:1;IMPRECISE;CIPOS=-273,274;SOMATIC;SOMATICSCORE=12;BND_DEPTH=47;MATE_BND_DEPTH=38	PR	56,0	207,6
6	123340960	MantaBND:126056:0:4:0:0:0:1	G	]8:30899071]G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:126056:0:4:0:0:0:0;IMPRECISE;CIPOS=-259,260;SOMATIC;SOMATICSCORE=12;BND_DEPTH=38;MATE_BND_DEPTH=47	PR	56,0	207,6
15	23717166	MantaBND:127316:0:1:0:0:0:0	C	[6:138774059[GATAATATACC	.	PASS	SVTYPE=BND;MATEID=MantaBND:127316:0:1:0:0:0:1;SVINSLEN=10;SVINSSEQ=GATAATATAC;SOMATIC;SOMATICSCORE=60;BND_DEPTH=47;MATE_BND_DEPTH=37	PR:SR	76,0:61,0	258,10:207,23
6	138774059	MantaBND:127316:0:1:0:0:0:1	T	[15:23717166[GTATATTATCT	.	PASS	SVTYPE=BND;MATEID=MantaBND:127316:0:1:0:0:0:0;SVINSLEN=10;SVINSSEQ=GTATATTATC;SOMATIC;SOMATICSCORE=60;BND_DEPTH=37;MATE_BND_DEPTH=47	PR:SR	76,0:61,0	258,10:207,23
15	23712631	MantaDEL:127316:1:6:0:0:0	A	<DEL>	.	PASS	END=23717146;SVTYPE=DEL;SVLEN=-4515;IMPRECISE;CIPOS=-365,365;CIEND=-373,374;SOMATIC;SOMATICSCORE=45	PR	78,0	333,29
15	23712617	MantaBND:127316:6:11:0:0:0:0	G	G]6:138774182]	.	PASS	SVTYPE=BND;MATEID=MantaBND:127316:6:11:0:0:0:1;CIPOS=0,2;HOMLEN=2;HOMSEQ=CA;SOMATIC;SOMATICSCORE=61;BND_DEPTH=38;MATE_BND_DEPTH=38	PR:SR	88,0:53,0	261,14:212,25
6	138774180	MantaBND:127316:6:11:0:0:0:1	T	T]15:23712619]	.	PASS	SVTYPE=BND;MATEID=MantaBND:127316:6:11:0:0:0:0;CIPOS=0,2;HOMLEN=2;HOMSEQ=TG;SOMATIC;SOMATICSCORE=61;BND_DEPTH=38;MATE_BND_DEPTH=38	PR:SR	88,0:53,0	261,14:212,25
6	147133199	MantaDUP:TANDEM:128005:0:1:0:0:0	T	<DUP:TANDEM>	.	PASS	END=147140191;SVTYPE=DUP;SVLEN=6992;IMPRECISE;CIPOS=-244,245;CIEND=-509,509;SOMATIC;SOMATICSCORE=36	PR	70,0	147,10
7	6791872	MantaINS:131769:0:0:0:0:0	C	CGCAGGGGAACAAAAAGAGTTTGATTTCCCATAATTTGATGCTGTGATTTGGTTTCCTCAGGATGTGACCTT	.	PASS	END=6791872;SVTYPE=INS;SVLEN=71;CIGAR=1M71I;CIPOS=0,67;HOMLEN=67;HOMSEQ=GCAGGGGAACAAAAAGAGTTTGATTTCCCATAATTTGATGCTGTGATTTGGTTTCCTCAGGATGTGA;SOMATIC;SOMATICSCORE=31	PR:SR	0,0:14,0	0,0:42,20
7	6791872	MantaINS:131769:0:0:1:0:0	C	CGCAGGGGAACAAAAAGAGTTTGATTTCCCATAATTTGATGCTGTGATTTGGTTTCCTCAGGATGTGACCTT	.	PASS	END=6791872;SVTYPE=INS;SVLEN=71;CIGAR=1M71I;CIPOS=0,67;HOMLEN=67;HOMSEQ=GCAGGGGAACAAAAAGAGTTTGATTTCCCATAATTTGATGCTGTGATTTGGTTTCCTCAGGATGTGA;SOMATIC;SOMATICSCORE=31	PR:SR	0,0:14,0	0,0:42,20
7	11560859	MantaBND:132393:0:1:0:0:0:0	G	G[14:50896883[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:132393:0:1:0:0:0:1;IMPRECISE;CIPOS=-384,385;SOMATIC;SOMATICSCORE=18;BND_DEPTH=38;MATE_BND_DEPTH=51	PR	75,1	199,15
14	50896883	MantaBND:132393:0:1:0:0:0:1	C	]7:11560859]C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:132393:0:1:0:0:0:0;IMPRECISE;CIPOS=-249,249;SOMATIC;SOMATICSCORE=18;BND_DEPTH=51;MATE_BND_DEPTH=38	PR	75,1	199,15
7	20824938	MantaDEL:133528:0:1:0:0:0	GGAGCCGCCGCCGCCGCCCCCGCCGCCGCCGCCGCTGCCCCCGGAAACTCCGGGGGCCTGGAAAACAGAGTAGTCGTTGGCGAAGGGCGAGCTGGAGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCTGCGGCGCTGCTGGAGGTGAGGGAGAAGGCGCTGGAGCCAGGC	G	.	MinSomaticScore	END=20825106;SVTYPE=DEL;SVLEN=-168;CIGAR=1M168D;CIPOS=0,10;HOMLEN=10;HOMSEQ=GAGCCGCCGC;SOMATIC;SOMATICSCORE=26	PR:SR	18,0:23,0	56,0:95,9
7	29723974	MantaBND:134596:0:1:0:0:0:0	C	[7:32768938[C	.	PASS	SVTYPE=BND;MATEID=MantaBND:134596:0:1:0:0:0:1;IMPRECISE;CIPOS=-234,235;SOMATIC;SOMATICSCORE=32;BND_DEPTH=47;MATE_BND_DEPTH=45	PR	86,0	210,7
7	32768938	MantaBND:134596:0:1:0:0:0:1	T	[7:29723974[T	.	PASS	SVTYPE=BND;MATEID=MantaBND:134596:0:1:0:0:0:0;IMPRECISE;CIPOS=-414,415;SOMATIC;SOMATICSCORE=32;BND_DEPTH=45;MATE_BND_DEPTH=47	PR	86,0	210,7
7	29672863	MantaDEL:134695:0:1:0:0:0	T	<DEL>	.	MinSomaticScore	END=29785365;SVTYPE=DEL;SVLEN=-112502;IMPRECISE;CIPOS=-249,249;CIEND=-305,306;SOMATIC;SOMATICSCORE=22	PR	77,1	268,18
7	57471576	MantaDEL:135364:0:1:0:0:0	G	<DEL>	.	PASS	END=57496108;SVTYPE=DEL;SVLEN=-24532;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=GC;SOMATIC;SOMATICSCORE=212	PR:SR	70,0:58,0	123,83:104,60
21	9433273	MantaBND:137931:0:4:0:0:0:0	G	G]7:57744243]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:137931:0:4:0:0:0:1;IMPRECISE;CIPOS=-595,595;EVENT=MantaBND:137931:0:4:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=117;MATE_BND_DEPTH=54	PR	172,3	632,7
7	57744243	MantaBND:137931:0:4:0:0:0:1	T	T]21:9433273]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:137931:0:4:0:0:0:0;IMPRECISE;CIPOS=-368,369;EVENT=MantaBND:137931:0:4:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=54;MATE_BND_DEPTH=117	PR	172,3	632,7
7	57743758	MantaBND:137931:0:4:1:0:0:0	C	[21:9433810[C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:137931:0:4:1:0:0:1;IMPRECISE;CIPOS=-226,226;EVENT=MantaBND:137931:0:4:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=10;BND_DEPTH=91;MATE_BND_DEPTH=99	PR	135,1	601,9
21	9433810	MantaBND:137931:0:4:1:0:0:1	A	[7:57743758[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:137931:0:4:1:0:0:0;IMPRECISE;CIPOS=-368,369;EVENT=MantaBND:137931:0:4:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=10;BND_DEPTH=99;MATE_BND_DEPTH=91	PR	135,1	601,9
7	72139912	MantaBND:139089:0:2:0:0:0:0	T	[7:66602008[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:139089:0:2:0:0:0:1;IMPRECISE;CIPOS=-229,230;SOMATIC;SOMATICSCORE=13;BND_DEPTH=38;MATE_BND_DEPTH=32	PR	62,1	171,10
7	66602008	MantaBND:139089:0:2:0:0:0:1	C	[7:72139912[C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:139089:0:2:0:0:0:0;IMPRECISE;CIPOS=-314,315;SOMATIC;SOMATICSCORE=13;BND_DEPTH=32;MATE_BND_DEPTH=38	PR	62,1	171,10
7	102416821	MantaBND:140610:0:1:0:0:0:0	C	[7:76724293[C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:140610:0:1:0:0:0:1;IMPRECISE;CIPOS=-251,251;EVENT=MantaBND:140610:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=34;MATE_BND_DEPTH=41	PR	71,3	250,3
7	76724293	MantaBND:140610:0:1:0:0:0:1	A	[7:102416821[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:140610:0:1:0:0:0:0;IMPRECISE;CIPOS=-227,228;EVENT=MantaBND:140610:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=41;MATE_BND_DEPTH=34	PR	71,3	250,3
7	102416565	MantaBND:140610:0:1:1:0:0:0	A	A]7:76724779]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:140610:0:1:1:0:0:1;IMPRECISE;CIPOS=-438,438;EVENT=MantaBND:140610:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=29;BND_DEPTH=28;MATE_BND_DEPTH=42	PR	72,0	257,9
7	76724779	MantaBND:140610:0:1:1:0:0:1	C	C]7:102416565]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:140610:0:1:1:0:0:0;IMPRECISE;CIPOS=-307,307;EVENT=MantaBND:140610:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=29;BND_DEPTH=42;MATE_BND_DEPTH=28	PR	72,0	257,9
7	77981839	MantaDEL:140732:0:1:0:0:0	C	<DEL>	.	PASS	END=78082248;SVTYPE=DEL;SVLEN=-100409;SVINSLEN=1;SVINSSEQ=A;SOMATIC;SOMATICSCORE=133	PR:SR	74,0:59,0	184,52:146,41
7	78190205	MantaDEL:140799:0:1:0:1:0	G	<DEL>	.	PASS	END=78257684;SVTYPE=DEL;SVLEN=-67479;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=GC;SOMATIC;SOMATICSCORE=103	PR:SR	91,0:51,0	208,38:146,26
7	85844667	MantaDUP:TANDEM:141639:0:1:0:1:0	A	<DUP:TANDEM>	.	PASS	END=85853700;SVTYPE=DUP;SVLEN=9033;SVINSLEN=3;SVINSSEQ=GTC;SOMATIC;SOMATICSCORE=79	PR:SR	69,0:42,0	303,50:183,22
13	63610692	MantaBND:143479:0:1:2:0:0:0	G	G]17:21676987]	.	MaxDepth;MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:143479:0:1:2:0:0:1;IMPRECISE;CIPOS=-239,239;SOMATIC;SOMATICSCORE=10;BND_DEPTH=58;MATE_BND_DEPTH=114	PR	149,1	524,8
17	21676987	MantaBND:143479:0:1:2:0:0:1	C	C]13:63610692]	.	MaxDepth;MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:143479:0:1:2:0:0:0;IMPRECISE;CIPOS=-291,291;SOMATIC;SOMATICSCORE=10;BND_DEPTH=114;MATE_BND_DEPTH=58	PR	149,1	524,8
17	21677306	MantaBND:143479:0:1:5:0:0:0	A	[13:63610337[A	.	PASS	SVTYPE=BND;MATEID=MantaBND:143479:0:1:5:0:0:1;IMPRECISE;CIPOS=-262,262;SOMATIC;SOMATICSCORE=51;BND_DEPTH=69;MATE_BND_DEPTH=98	PR	146,0	464,19
13	63610337	MantaBND:143479:0:1:5:0:0:1	C	[17:21677306[C	.	PASS	SVTYPE=BND;MATEID=MantaBND:143479:0:1:5:0:0:0;IMPRECISE;CIPOS=-446,446;SOMATIC;SOMATICSCORE=51;BND_DEPTH=98;MATE_BND_DEPTH=69	PR	146,0	464,19
7	104485066	MantaDUP:TANDEM:143857:0:1:0:0:0	T	<DUP:TANDEM>	.	PASS	END=104612300;SVTYPE=DUP;SVLEN=127234;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=GG;SOMATIC;SOMATICSCORE=139	PR:SR	87,0:54,0	246,79:200,42
7	110393332	MantaDEL:144567:0:1:0:0:0	T	<DEL>	.	PASS	END=110394460;SVTYPE=DEL;SVLEN=-1128;SOMATIC;SOMATICSCORE=80	PR:SR	84,0:63,0	199,30:162,26
7	110273898	MantaDUP:TANDEM:144576:0:1:0:1:0	C	<DUP:TANDEM>	.	PASS	END=110290533;SVTYPE=DUP;SVLEN=16635;CIPOS=0,4;CIEND=0,4;HOMLEN=4;HOMSEQ=AGAA;SOMATIC;SOMATICSCORE=37	PR:SR	54,0:31,0	198,3:120,4
7	125746123	MantaDEL:146120:0:1:0:0:0	A	<DEL>	.	PASS	END=126166900;SVTYPE=DEL;SVLEN=-420777;SVINSLEN=1;SVINSSEQ=T;SOMATIC;SOMATICSCORE=126	PR:SR	58,0:34,0	175,78:166,50
7	126167441	MantaBND:146120:1:3:0:0:0:0	A	[7:126098491[A	.	PASS	SVTYPE=BND;MATEID=MantaBND:146120:1:3:0:0:0:1;CIPOS=0,3;HOMLEN=3;HOMSEQ=TAT;SOMATIC;SOMATICSCORE=159;BND_DEPTH=37;MATE_BND_DEPTH=38	PR:SR	62,0:48,0	190,100:144,50
7	126098488	MantaBND:146120:1:3:0:0:0:1	T	[7:126167444[T	.	PASS	SVTYPE=BND;MATEID=MantaBND:146120:1:3:0:0:0:0;CIPOS=0,3;HOMLEN=3;HOMSEQ=ATG;SOMATIC;SOMATICSCORE=159;BND_DEPTH=38;MATE_BND_DEPTH=37	PR:SR	62,0:48,0	190,100:144,50
7	139552845	MantaDEL:148325:0:1:0:1:0	AAGCCCCAGCTGACCCCTCTGGGCTCAAACTTTACTGAAGTGAAGACCTGGTCTGTGCAGAGGAGATAATGACAGATTTATCTGTCCTTATTTCAAGTCTTGAAGCCCTGTTGACTTAGTGGCTAATCTGATCAACTGATTTGAACCCTGGGGATAGCGTCCTGTAAGATGGCATCTGCCTTTTCACAGGGGACTCAGAGCCCTCAACCCACAGACTTGAACAAACAGGGGCTTTTCGCATCCCCCGTCTTACAGATAGGTTGGATTCTGGGCAACTGGCTGCTCTGCAAATGTAAAGTGAGAAACAGTAGGGCCTGGTAATGGTGAGCACAGACTCCAGAGCCAGACAGCCTGGGTTCGAATCTCAGCTGTGCTACTCACTAGCAGTGTGACCTTGGGCCAGTTACTTAATCTCTCTGAGCCTCAGTGTTCCCATCTGCAAAACGGAGATAATAATAACAGCATGTTCCACACAGAATTTGGGGAGGAGTAAATGAGCTCATGTGTGGGAAGCACTCAGCCGGGCTCCTGGCTCACAGGAAGCATCCTGTAACTGTTTCCTTTTATTACGCAGGATCCAGAGGCAGGGGC	A	.	MinSomaticScore	END=139553435;SVTYPE=DEL;SVLEN=-590;CIGAR=1M590D;CIPOS=0,25;HOMLEN=25;HOMSEQ=AGCCCCAGCTGACCCCTCTGGGCTC;SOMATIC;SOMATICSCORE=10	PR:SR	54,0:45,0	339,2:202,11
7	141654999	MantaDEL:148668:1:1:0:2:0	TATATGTATGTATAAATATGTGTATATGTATATATGTATATATGTGTGTATATGTGTGTGTGTATGTATGCATATACATATATATGTACGTATATGCATACATACACACATATACACACATATATACATATATACACACATATTTATACATAC	T	.	MinSomaticScore	END=141655151;SVTYPE=DEL;SVLEN=-152;CIGAR=1M152D;CIPOS=0,13;HOMLEN=13;HOMSEQ=ATATGTATGTATA;SOMATIC;SOMATICSCORE=11	PR:SR	22,0:34,0	118,0:164,6
7	141654999	MantaDEL:148668:0:1:0:2:0	TATATGTATGTATAAATATGTGTATATGTATATATGTATATATGTGTGTATATGTGTGTGTGTATGTATGCATATACATATATATGTACGTATATGCATACATACACACATATACACACATATATACATATATACACACATATTTATACATAC	T	.	MinSomaticScore	END=141655151;SVTYPE=DEL;SVLEN=-152;CIGAR=1M152D;CIPOS=0,13;HOMLEN=13;HOMSEQ=ATATGTATGTATA;SOMATIC;SOMATICSCORE=11	PR:SR	22,0:34,0	118,0:164,6
15	84810725	MantaBND:149878:0:1:0:0:0:0	G	]7:150746657]G	.	PASS	SVTYPE=BND;MATEID=MantaBND:149878:0:1:0:0:0:1;SOMATIC;SOMATICSCORE=247;BND_DEPTH=46;MATE_BND_DEPTH=38	PR:SR	75,0:57,0	98,83:69,55
7	150746657	MantaBND:149878:0:1:0:0:0:1	C	C[15:84810725[	.	PASS	SVTYPE=BND;MATEID=MantaBND:149878:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=247;BND_DEPTH=38;MATE_BND_DEPTH=46	PR:SR	75,0:57,0	98,83:69,55
8	5640077	MantaDEL:151768:0:0:0:1:1	GTATATATACACATGTATATATGTATATACATATACACAAGTGTATATGTATATATATATATACATGTGTATATATATA	G	.	MinSomaticScore	END=5640155;SVTYPE=DEL;SVLEN=-78;CIGAR=1M78D;CIPOS=0,8;HOMLEN=8;HOMSEQ=TATATATA;SOMATIC;SOMATICSCORE=14	PR:SR	5,0:14,0	21,0:32,10
8	6203037	MantaDEL:151936:0:0:0:0:0	TGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCATGAGCTCAGGAGATCAAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTGCTAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGTGCCTGTACTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCACCACTGCACTCCAGCCTGGTAGACAGAGCAAAAAAAAAGCAAATTCTTTTCAGCCATTTAAAAACGTAAAAGCCGTTCTTAGCTCATGGGCCATACAAAAACAGAGGGTCAGCTGGGTTTAAACCTCAGGCTGTAATTTACTGACCCCTGTATTAAACAGCAGGCAAGCCAAAGTTAAAAGTTATAAAAGTTAATACAAAAGGCCGGGCGCGGTGGCTCAC	T	.	MinSomaticScore	END=6203477;SVTYPE=DEL;SVLEN=-440;CIGAR=1M440D;CIPOS=0,36;HOMLEN=36;HOMSEQ=GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGG;SOMATIC;SOMATICSCORE=14	PR:SR	60,0:40,2	139,1:111,11
11	71311020	MantaBND:151998:2:6:0:0:0:0	G	G]11:3615541]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:151998:2:6:0:0:0:1;IMPRECISE;CIPOS=-384,384;EVENT=MantaBND:151998:2:6:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=24;MATE_BND_DEPTH=36	PR	54,1	147,4
11	3615541	MantaBND:151998:2:6:0:0:0:1	G	G]11:71311020]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:151998:2:6:0:0:0:0;IMPRECISE;CIPOS=-216,216;EVENT=MantaBND:151998:2:6:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0;BND_DEPTH=36;MATE_BND_DEPTH=24	PR	54,1	147,4
11	71311170	MantaBND:151998:2:6:1:0:0:0	A	[11:3614981[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:151998:2:6:1:0:0:1;IMPRECISE;CIPOS=-314,315;EVENT=MantaBND:151998:2:6:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=16;BND_DEPTH=27;MATE_BND_DEPTH=39	PR	51,0	155,7
11	3614981	MantaBND:151998:2:6:1:0:0:1	T	[11:71311170[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:151998:2:6:1:0:0:0;IMPRECISE;CIPOS=-213,213;EVENT=MantaBND:151998:2:6:0:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=16;BND_DEPTH=39;MATE_BND_DEPTH=27	PR	51,0	155,7
8	78518239	MantaDUP:TANDEM:159498:1:2:0:1:0	A	<DUP:TANDEM>	.	PASS	END=112063330;SVTYPE=DUP;SVLEN=33545091;SVINSLEN=3;SVINSSEQ=GAT;SOMATIC;SOMATICSCORE=39	PR:SR	63,0:55,0	220,5:199,5
8	112062419	MantaDEL:159498:2:5:0:1:0	A	<DEL>	.	PASS	END=112063581;SVTYPE=DEL;SVLEN=-1162;CIPOS=0,1;CIEND=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=30	PR:SR	61,0:57,0	222,5:175,5
15	66917273	MantaBND:161423:0:1:0:3:0:0	G	]8:99164110]AAAG	.	PASS	SVTYPE=BND;MATEID=MantaBND:161423:0:1:0:3:0:1;SVINSLEN=3;SVINSSEQ=AAA;SOMATIC;SOMATICSCORE=51;BND_DEPTH=49;MATE_BND_DEPTH=48	PR:SR	45,0:23,0	128,0:63,16
8	99164110	MantaBND:161423:0:1:0:3:0:1	A	AAAA[15:66917273[	.	PASS	SVTYPE=BND;MATEID=MantaBND:161423:0:1:0:3:0:0;SVINSLEN=3;SVINSSEQ=AAA;SOMATIC;SOMATICSCORE=51;BND_DEPTH=48;MATE_BND_DEPTH=49	PR:SR	45,0:23,0	128,0:63,16
9	28034298	MantaDEL:168649:1:3:0:0:0	C	<DEL>	.	PASS	END=28157691;SVTYPE=DEL;SVLEN=-123393;CIPOS=0,1;CIEND=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=170	PR:SR	69,0:56,0	65,37:49,23
9	28031863	MantaBND:168649:1:2:0:0:0:0	C	[9:28034467[TTTTCGGAATTC	.	PASS	SVTYPE=BND;MATEID=MantaBND:168649:1:2:0:0:0:1;SVINSLEN=11;SVINSSEQ=TTTTCGGAATT;SOMATIC;SOMATICSCORE=180;BND_DEPTH=49;MATE_BND_DEPTH=40	PR:SR	88,0:68,0	68,42:54,28
9	28034467	MantaBND:168649:1:2:0:0:0:1	G	[9:28031863[AATTCCGAAAAG	.	PASS	SVTYPE=BND;MATEID=MantaBND:168649:1:2:0:0:0:0;SVINSLEN=11;SVINSSEQ=AATTCCGAAAA;SOMATIC;SOMATICSCORE=180;BND_DEPTH=40;MATE_BND_DEPTH=49	PR:SR	88,0:68,0	68,42:54,28
9	28059140	MantaBND:168649:0:2:0:0:0:0	G	GACTATT]9:28031835]	.	PASS	SVTYPE=BND;MATEID=MantaBND:168649:0:2:0:0:0:1;SVINSLEN=6;SVINSSEQ=ACTATT;SOMATIC;SOMATICSCORE=208;BND_DEPTH=48;MATE_BND_DEPTH=51	PR:SR	90,0:65,0	75,47:63,31
9	28031835	MantaBND:168649:0:2:0:0:0:1	A	AAATAGT]9:28059140]	.	PASS	SVTYPE=BND;MATEID=MantaBND:168649:0:2:0:0:0:0;SVINSLEN=6;SVINSSEQ=AATAGT;SOMATIC;SOMATICSCORE=208;BND_DEPTH=51;MATE_BND_DEPTH=48	PR:SR	90,0:65,0	75,47:63,31
9	73659610	MantaDEL:171675:0:0:0:2:0	CGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGGCCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCAGCCACCACGCCCGGCTAATTTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGATCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAACCATGAACCACAGCGCCCGGCCATTTCCAGACTTAACTGTTATTGCTCTCTGTTGTATTTTGGTCAATCCAGGAGACACTCCATCGAAGAGTCTCTAGGATTTATTATCACTTTTAATACTCCTGTAGTTTTATTTTTACTATTTATTATTATTATTATTATTTTGGAGAT	C	.	MinSomaticScore	END=73660035;SVTYPE=DEL;SVLEN=-425;CIGAR=1M425D;CIPOS=0,8;HOMLEN=8;HOMSEQ=GGAGTCTC;SOMATIC;SOMATICSCORE=12	PR:SR	49,0:33,2	197,1:140,13
13	19651536	MantaBND:173942:0:1:0:0:0:0	T	T]9:96374693]	.	PASS	SVTYPE=BND;MATEID=MantaBND:173942:0:1:0:0:0:1;IMPRECISE;CIPOS=-460,460;SOMATIC;SOMATICSCORE=31;BND_DEPTH=68;MATE_BND_DEPTH=33	PR	108,0	399,10
9	96374693	MantaBND:173942:0:1:0:0:0:1	T	T]13:19651536]	.	PASS	SVTYPE=BND;MATEID=MantaBND:173942:0:1:0:0:0:0;IMPRECISE;CIPOS=-366,366;SOMATIC;SOMATICSCORE=31;BND_DEPTH=33;MATE_BND_DEPTH=68	PR	108,0	399,10
9	133448960	MantaDEL:178166:0:1:0:0:0	CCAGGCGTGGTAGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGGTCACGAGGTCAGGAGTTCGGGACCAGCCTGGCCAACATGGTGAAACCTCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCACACGCCTGTAGTCCTAGCTACTCAGGAGGCTGAGGCAGACGAATCGCTTGAACCCAGGAGGCGGAGGTTGTAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGTGACAGAACGAGACCCCGTCTCAAAAAAAAAAAAAAAAAAAAAGGCTAAAGTTTAAAATGCTGACCAGACTCAAATGTTGTCAAGTAGGTAAAGAAACTGGAAAACTGGAATGTTCACATGTTGCTTACAAGAATGAAAAAAACTGAAAAATGGTACAAGCACTTTGTTGTTTCTGTTTGTTTTGTTTTGTTTTTTAGAGACAGGGTCTCACGATGTTGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAGGGATCTTCCCTCCTTGGCCTCCCAAAGTGCTGGGATTA	C	.	MinSomaticScore	END=133449503;SVTYPE=DEL;SVLEN=-543;CIGAR=1M543D;CIPOS=0,8;HOMLEN=8;HOMSEQ=CAGGCGTG;SOMATIC;SOMATICSCORE=29	PR:SR	61,0:43,0	202,1:142,11
10	5011839	MantaBND:179795:1:2:0:0:0:0	A	A]10:5040202]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:179795:1:2:0:0:0:1;IMPRECISE;CIPOS=-221,222;SOMATIC;SOMATICSCORE=15;BND_DEPTH=37;MATE_BND_DEPTH=43	PR	73,1	151,9
10	5040202	MantaBND:179795:1:2:0:0:0:1	C	C]10:5011839]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:179795:1:2:0:0:0:0;IMPRECISE;CIPOS=-555,556;SOMATIC;SOMATICSCORE=15;BND_DEPTH=43;MATE_BND_DEPTH=37	PR	73,1	151,9
10	5006495	MantaBND:179833:0:1:0:0:0:0	C	C]10:5045180]	.	PASS	SVTYPE=BND;MATEID=MantaBND:179833:0:1:0:0:0:1;IMPRECISE;CIPOS=-256,257;SOMATIC;SOMATICSCORE=47;BND_DEPTH=36;MATE_BND_DEPTH=45	PR	75,0	153,11
10	5045180	MantaBND:179833:0:1:0:0:0:1	C	C]10:5006495]	.	PASS	SVTYPE=BND;MATEID=MantaBND:179833:0:1:0:0:0:0;IMPRECISE;CIPOS=-471,471;SOMATIC;SOMATICSCORE=47;BND_DEPTH=45;MATE_BND_DEPTH=36	PR	75,0	153,11
10	7059511	MantaBND:180113:0:1:0:0:0:0	T	]19:17396810]T	.	PASS	SVTYPE=BND;MATEID=MantaBND:180113:0:1:0:0:0:1;CIPOS=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=143;BND_DEPTH=50;MATE_BND_DEPTH=37	PR:SR	81,0:62,0	128,39:88,39
19	17396810	MantaBND:180113:0:1:0:0:0:1	T	T[10:7059511[	.	PASS	SVTYPE=BND;MATEID=MantaBND:180113:0:1:0:0:0:0;CIPOS=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=143;BND_DEPTH=37;MATE_BND_DEPTH=50	PR:SR	81,0:62,0	128,39:88,39
10	7132872	MantaBND:180113:1:2:0:0:0:0	G	G[19:17397640[	.	PASS	SVTYPE=BND;MATEID=MantaBND:180113:1:2:0:0:0:1;CIPOS=0,4;HOMLEN=4;HOMSEQ=AGAA;SOMATIC;SOMATICSCORE=126;BND_DEPTH=51;MATE_BND_DEPTH=39	PR:SR	64,0:61,0	114,39:87,21
19	17397640	MantaBND:180113:1:2:0:0:0:1	A	]10:7132872]A	.	PASS	SVTYPE=BND;MATEID=MantaBND:180113:1:2:0:0:0:0;CIPOS=0,4;HOMLEN=4;HOMSEQ=GAAG;SOMATIC;SOMATICSCORE=126;BND_DEPTH=39;MATE_BND_DEPTH=51	PR:SR	64,0:61,0	114,39:87,21
18	9868617	MantaBND:180193:0:1:0:0:0:0	C	[10:7634373[C	.	PASS	SVTYPE=BND;MATEID=MantaBND:180193:0:1:0:0:0:1;SOMATIC;SOMATICSCORE=94;BND_DEPTH=44;MATE_BND_DEPTH=31	PR:SR	65,0:44,0	125,34:88,12
10	7634373	MantaBND:180193:0:1:0:0:0:1	A	[18:9868617[A	.	PASS	SVTYPE=BND;MATEID=MantaBND:180193:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=94;BND_DEPTH=31;MATE_BND_DEPTH=44	PR:SR	65,0:44,0	125,34:88,12
10	43227779	MantaBND:183674:0:1:0:0:0:0	T	T]10:45607320]	.	PASS	SVTYPE=BND;MATEID=MantaBND:183674:0:1:0:0:0:1;IMPRECISE;CIPOS=-254,254;SOMATIC;SOMATICSCORE=32;BND_DEPTH=42;MATE_BND_DEPTH=44	PR	82,1	115,18
10	45607320	MantaBND:183674:0:1:0:0:0:1	G	G]10:43227779]	.	PASS	SVTYPE=BND;MATEID=MantaBND:183674:0:1:0:0:0:0;IMPRECISE;CIPOS=-500,500;SOMATIC;SOMATICSCORE=32;BND_DEPTH=44;MATE_BND_DEPTH=42	PR	82,1	115,18
10	55476344	MantaDEL:184493:0:0:0:0:0	CTCTGATTGAAATAAAATAACCCCCTTTTTTCCCTTCTGATTCTCAAGTACAATAAAAAGTGCAGAACATTTCTATAATGAGTACTATTTATTAAGCACTTACCATGCTCTTGGCTCTGACCTAAGTATTTTATACTGATTATCTAATTTAATCCTTATAAAAATATTGTGATGTAGGGAGTATATTTACCCTCTGAGGATGAAGAAAGACAATTTCCTATAAGTTTACATGAGTAATAAAGAGGAGATTTGAAACTTGGATGAAGCCTTAAATTTAAAGTCAAACTTTGACAACTATACCCAAATCATTTATACTGATAATTAGCACCTATGATCTCACATGTATCATGATAATAATATAATTTTGGTATTTAGCCAGGTGAAATAATGTATAAGTTGCCTTCATTTCTGCTGAGCTGTGGAATCTTAAATAACTTAATAAGGCACTGAAATGATGCAGCAGCTTCAAAGATGAAGATTTGGTATTTCTAAGTGCAATTTTCCCCAGAATTTATCTCTCGCTTATTCTCTTCTGGCCCACACAGTTTGTCT	C	.	PASS	END=55476895;SVTYPE=DEL;SVLEN=-551;CIGAR=1M551D;CIPOS=0,5;HOMLEN=5;HOMSEQ=TCTGA;SOMATIC;SOMATICSCORE=36	PR:SR	81,0:61,0	112,5:91,5
10	83641806	MantaDEL:186893:0:1:0:0:0	T	<DEL>	.	PASS	END=83827665;SVTYPE=DEL;SVLEN=-185859;SVINSLEN=5;SVINSSEQ=ATTAT;SOMATIC;SOMATICSCORE=55	PR:SR	58,0:67,0	109,14:105,4
10	89700299	MantaDEL:187358:0:1:0:0:0	A	<DEL>	.	PASS	END=89712340;SVTYPE=DEL;SVLEN=-12041;SVINSLEN=18;SVINSSEQ=GAGATTATACTTTGTGTA;SOMATIC;SOMATICSCORE=337	PR:SR	77,0:75,0	0,81:0,57
11	37459924	MantaBND:188445:0:1:0:1:0:0	C	[11:40859860[C	.	PASS	SVTYPE=BND;MATEID=MantaBND:188445:0:1:0:1:0:1;CIPOS=0,3;HOMLEN=3;HOMSEQ=AAC;SOMATIC;SOMATICSCORE=41;BND_DEPTH=40;MATE_BND_DEPTH=47	PR:SR	88,0:61,0	214,1:175,7
11	40859857	MantaBND:188445:0:1:0:1:0:1	T	[11:37459927[T	.	PASS	SVTYPE=BND;MATEID=MantaBND:188445:0:1:0:1:0:0;CIPOS=0,3;HOMLEN=3;HOMSEQ=TGG;SOMATIC;SOMATICSCORE=41;BND_DEPTH=47;MATE_BND_DEPTH=40	PR:SR	88,0:61,0	214,1:175,7
11	40859255	MantaBND:195879:0:1:0:0:0:0	G	G]11:37460103]	.	PASS	SVTYPE=BND;MATEID=MantaBND:195879:0:1:0:0:0:1;CIPOS=0,4;HOMLEN=4;HOMSEQ=CCGG;SOMATIC;SOMATICSCORE=37;BND_DEPTH=40;MATE_BND_DEPTH=39	PR:SR	80,0:38,0	208,4:116,3
11	37460099	MantaBND:195879:0:1:0:0:0:1	C	C]11:40859259]	.	PASS	SVTYPE=BND;MATEID=MantaBND:195879:0:1:0:0:0:0;CIPOS=0,4;HOMLEN=4;HOMSEQ=CCGG;SOMATIC;SOMATICSCORE=37;BND_DEPTH=39;MATE_BND_DEPTH=40	PR:SR	80,0:38,0	208,4:116,3
11	71280310	MantaBND:199348:0:1:0:0:0:0	A	A]11:71290623]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:199348:0:1:0:0:0:1;IMPRECISE;CIPOS=-331,331;SOMATIC;SOMATICSCORE=23;BND_DEPTH=48;MATE_BND_DEPTH=26	PR	74,0	158,13
11	71290623	MantaBND:199348:0:1:0:0:0:1	T	T]11:71280310]	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:199348:0:1:0:0:0:0;IMPRECISE;CIPOS=-469,469;SOMATIC;SOMATICSCORE=23;BND_DEPTH=26;MATE_BND_DEPTH=48	PR	74,0	158,13
11	80346302	MantaDEL:200189:0:1:0:1:0	C	<DEL>	.	MinSomaticScore	END=81091243;SVTYPE=DEL;SVLEN=-744941;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=TT;SOMATIC;SOMATICSCORE=28	PR:SR	62,0:67,0	145,2:122,2
11	80785598	MantaDEL:200227:0:1:0:0:0	T	<DEL>	.	PASS	END=81093779;SVTYPE=DEL;SVLEN=-308181;CIPOS=0,4;CIEND=0,4;HOMLEN=4;HOMSEQ=AGTT;SOMATIC;SOMATICSCORE=144	PR:SR	76,0:53,0	120,49:106,31
11	124115847	MantaBND:204470:0:2:0:0:0:0	C	[11:124108194[C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:204470:0:2:0:0:0:1;IMPRECISE;CIPOS=-233,233;SOMATIC;SOMATICSCORE=13;BND_DEPTH=47;MATE_BND_DEPTH=32	PR	74,1	152,17
11	124108194	MantaBND:204470:0:2:0:0:0:1	G	[11:124115847[G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:204470:0:2:0:0:0:0;IMPRECISE;CIPOS=-420,421;SOMATIC;SOMATICSCORE=13;BND_DEPTH=32;MATE_BND_DEPTH=47	PR	74,1	152,17
12	11083133	MantaBND:206884:0:2:0:0:0:0	G	[12:11035316[G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:206884:0:2:0:0:0:1;IMPRECISE;CIPOS=-219,220;SOMATIC;SOMATICSCORE=16;BND_DEPTH=50;MATE_BND_DEPTH=36	PR	54,1	136,11
12	11035316	MantaBND:206884:0:2:0:0:0:1	G	[12:11083133[G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:206884:0:2:0:0:0:0;IMPRECISE;CIPOS=-381,381;SOMATIC;SOMATICSCORE=16;BND_DEPTH=36;MATE_BND_DEPTH=50	PR	54,1	136,11
12	25957253	MantaDEL:208459:0:7:0:0:0	A	<DEL>	.	MinSomaticScore	END=104380687;SVTYPE=DEL;SVLEN=-78423434;IMPRECISE;CIPOS=-569,570;CIEND=-367,367;SOMATIC;SOMATICSCORE=15	PR	93,0	209,6
12	32330646	MantaDUP:TANDEM:209216:0:0:1:2:0	T	<DUP:TANDEM>	.	MinSomaticScore	END=32330708;SVTYPE=DUP;SVLEN=62;SVINSLEN=3;SVINSSEQ=TAA;SOMATIC;SOMATICSCORE=10	PR:SR	10,0:8,2	21,0:18,7
12	34172554	MantaDEL:209432:0:1:0:0:0	T	<DEL>	.	MinSomaticScore	END=38707613;SVTYPE=DEL;SVLEN=-4535059;IMPRECISE;CIPOS=-251,251;CIEND=-527,527;SOMATIC;SOMATICSCORE=17	PR	65,1	171,19
12	122137901	MantaDEL:218164:0:1:0:0:0	TCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGAATACAGGTGCCCGTCACCACGCCCGGCTAATTTTTTGTGTTTTTAGTAGAGACGGGGTTTCATCGTGTTAGCCAGGATGGTCTGGATCTCCTGACCTCGGGGTCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCTCGCCCTGCCCAAAACATTTATTTTTTAAAAAACACAAATACGGGAAGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATAGCGC	T	.	MinSomaticScore	END=122138225;SVTYPE=DEL;SVLEN=-324;CIGAR=1M324D;CIPOS=0,7;HOMLEN=7;HOMSEQ=CACTGCA;SOMATIC;SOMATICSCORE=28	PR:SR	42,0:33,0	108,1:62,5
14	73014648	MantaDUP:TANDEM:235459:0:1:0:1:0	A	<DUP:TANDEM>	.	PASS	END=73014746;SVTYPE=DUP;SVLEN=98;CIPOS=0,1;CIEND=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=32	PR:SR	38,0:45,0	68,0:98,29
14	107086657	MantaDEL:239134:0:1:2:0:0	T	<DEL>	.	MinSomaticScore	END=107098803;SVTYPE=DEL;SVLEN=-12146;IMPRECISE;CIPOS=-293,293;CIEND=-286,287;SOMATIC;SOMATICSCORE=10	PR	88,1	169,8
15	22823931	MantaDEL:239641:0:0:1:2:0	GACATTTATGAAGTCACCCCCAGCACCTCTGCTCAGGTGGGGTTATGAAGTTCCCCCCGCCCCCCAGCACCTCCGGCCGGGTGGGGTTATTATGGCCCCCCAGCATCTCTGGCCAGGTGGGATTATGATATCCCCTAGCACCTCTGGCCAGGTGAGGTTATGATGTCCCCCCAGCACCTCTGGCCAGGTGGGGTTATGAAATCCCCCGCAGCACCTCTGGCCAGGTGACATTTATGAAGTCACCCCCAGCACCTCTGGCCAGGTGGGGTTAAGAAGTTCCCCCCGCCCCCCAGCACCTCTGGCCAGGTGGGGTTATGATGGCCCCCCAGGACCTCCGGCCAGATTGGGTTATGATGGCCCCACAGCACCTCTGGCCAGGTGGGATTATGATACCCCCCAGCACCTCTGGCCAGGTGGGGTTATAATACACCCCCACAGCACCTCTAGCCAGGTGAGGTTATGATGTCCCCCCAGCACCTCTGGCCAGGTGGGGTTATGAAATCTCCCCCAGCACCTATGGCCAGCTGT	GG	.	PASS	END=22824458;SVTYPE=DEL;SVLEN=-527;CIGAR=1M1I527D;SOMATIC;SOMATICSCORE=36	PR:SR	20,0:11,4	78,3:34,15
15	24427627	MantaDEL:239844:0:1:0:0:0	C	<DEL>	.	MinSomaticScore	END=24643332;SVTYPE=DEL;SVLEN=-215705;IMPRECISE;CIPOS=-298,298;CIEND=-217,217;EVENT=MantaDEL:239844:0:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=19	PR	72,1	129,7
15	24427846	MantaDUP:TANDEM:239844:0:1:1:0:0	A	<DUP:TANDEM>	.	MinSomaticScore	END=24643885;SVTYPE=DUP;SVLEN=216039;IMPRECISE;CIPOS=-453,454;CIEND=-239,240;EVENT=MantaDEL:239844:0:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0	PR	71,3	120,2
15	28391380	MantaBND:240251:0:1:0:0:0:0	T	[15:31124862[T	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:240251:0:1:0:0:0:1;IMPRECISE;CIPOS=-233,234;SOMATIC;SOMATICSCORE=24;BND_DEPTH=32;MATE_BND_DEPTH=34	PR	66,1	117,14
15	31124862	MantaBND:240251:0:1:0:0:0:1	C	[15:28391380[C	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:240251:0:1:0:0:0:0;IMPRECISE;CIPOS=-336,336;SOMATIC;SOMATICSCORE=24;BND_DEPTH=34;MATE_BND_DEPTH=32	PR	66,1	117,14
15	41621291	MantaDUP:TANDEM:241413:0:1:0:0:0	A	<DUP:TANDEM>	.	PASS	END=41628506;SVTYPE=DUP;SVLEN=7215;CIPOS=0,4;CIEND=0,4;HOMLEN=4;HOMSEQ=ATAA;SOMATIC;SOMATICSCORE=169	PR:SR	57,0:38,0	90,60:54,48
15	64816988	MantaBND:243406:0:1:0:0:0:0	T	T[22:42640513[	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:243406:0:1:0:0:0:1;IMPRECISE;CIPOS=-269,270;SOMATIC;SOMATICSCORE=14;BND_DEPTH=45;MATE_BND_DEPTH=40	PR	79,0	189,8
22	42640513	MantaBND:243406:0:1:0:0:0:1	A	]15:64816988]A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:243406:0:1:0:0:0:0;IMPRECISE;CIPOS=-245,245;SOMATIC;SOMATICSCORE=14;BND_DEPTH=40;MATE_BND_DEPTH=45	PR	79,0	189,8
15	76491206	MantaDUP:TANDEM:244525:0:1:0:0:0	T	<DUP:TANDEM>	.	MinSomaticScore	END=76491273;SVTYPE=DUP;SVLEN=67;SOMATIC;SOMATICSCORE=14	PR:SR	36,0:36,0	39,0:32,9
15	78366194	MantaDEL:244687:0:1:1:0:0	CCCTCAGCTCGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGCCAGAGGTTGCAGTTAGCAGAGACTGTGCCACTGCACTCCAGCCTGGGCGACACAGCAAGACTCTGTTTCAAAAAAAAAAAGGGAGCAGGGTTTTAGAGTCGGGGTGTTTTTTGCTTGTTTGTTTGTTTGTTTGTTTGTTTTTAAGGTGGAGTCTCACTCTGTCGCTCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCATGCAATTCTCCTG	C	.	PASS	END=78366478;SVTYPE=DEL;SVLEN=-284;CIGAR=1M284D;CIPOS=0,7;HOMLEN=7;HOMSEQ=CCTCAGC;SOMATIC;SOMATICSCORE=33	PR:SR	38,0:39,0	74,0:55,8
17	26029970	MantaDEL:251777:1:1:0:0:0	GCACTTTGGCAGGCCAAGGTGGGTGATCACTTAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAATAAATTAGTAGGGCATGGTGGTGCATGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCACAGGATTAGAGCTGCCAACAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCCCCATATTGGCCAGGCTGGTCTCAAACTCCTGGCCTGAAGTGATCCACC	G	.	MinSomaticScore	END=26030237;SVTYPE=DEL;SVLEN=-267;CIGAR=1M267D;CIPOS=0,3;HOMLEN=3;HOMSEQ=CAC;SOMATIC;SOMATICSCORE=10	PR:SR	37,0:19,6	92,3:43,24
17	26029970	MantaDEL:251777:0:1:0:0:0	GCACTTTGGCAGGCCAAGGTGGGTGATCACTTAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAATAAATTAGTAGGGCATGGTGGTGCATGCCTGTAATCCCAGCCACTCGGGAGGCTGAGGCACAGGATTAGAGCTGCCAACAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCCCCATATTGGCCAGGCTGGTCTCAAACTCCTGGCCTGAAGTGATCCACC	G	.	MinSomaticScore	END=26030237;SVTYPE=DEL;SVLEN=-267;CIGAR=1M267D;CIPOS=0,3;HOMLEN=3;HOMSEQ=CAC;SOMATIC;SOMATICSCORE=10	PR:SR	37,0:19,6	92,3:43,24
16	58624545	MantaDEL:252964:0:1:0:0:0	T	<DEL>	.	PASS	END=58663330;SVTYPE=DEL;SVLEN=-38785;SVINSLEN=4;SVINSSEQ=CCAG;SOMATIC;SOMATICSCORE=315	PR:SR	69,0:62,0	0,79:0,41
16	78928633	MantaDEL:254861:0:1:0:0:0	G	<DEL>	.	PASS	END=79095000;SVTYPE=DEL;SVLEN=-166367;CIPOS=0,6;CIEND=0,6;HOMLEN=6;HOMSEQ=ATTGGG;SOMATIC;SOMATICSCORE=182	PR:SR	71,0:53,0	64,48:44,25
17	21335984	MantaDEL:258893:0:1:0:0:0	G	<DEL>	.	MinSomaticScore	END=25317625;SVTYPE=DEL;SVLEN=-3981641;IMPRECISE;CIPOS=-530,530;CIEND=-483,483;EVENT=MantaDEL:258893:0:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=16	PR	128,0	411,7
17	21336141	MantaDUP:TANDEM:258893:0:1:1:0:0	T	<DUP:TANDEM>	.	MinSomaticScore	END=25317897;SVTYPE=DUP;SVLEN=3981756;IMPRECISE;CIPOS=-242,242;CIEND=-212,212;EVENT=MantaDEL:258893:0:1:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0	PR	124,2	381,2
17	21334643	MantaDEL:258942:0:2:0:0:0	T	<DEL>	.	MinSomaticScore	END=25315901;SVTYPE=DEL;SVLEN=-3981258;IMPRECISE;CIPOS=-251,252;CIEND=-224,225;EVENT=MantaDEL:258942:0:2:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=0	PR	138,2	396,4
17	21334226	MantaDUP:TANDEM:258942:0:2:1:0:0	T	<DUP:TANDEM>	.	MinSomaticScore	END=25315917;SVTYPE=DUP;SVLEN=3981691;IMPRECISE;CIPOS=-398,399;CIEND=-221,222;EVENT=MantaDEL:258942:0:2:0:0:0;SOMATIC;SOMATICSCORE=0;JUNCTION_SOMATICSCORE=12	PR	145,1	388,6
17	21328380	MantaDUP:TANDEM:258819:0:1:2:0:0	C	<DUP:TANDEM>	.	MaxDepth	END=25309913;SVTYPE=DUP;SVLEN=3981533;IMPRECISE;CIPOS=-394,395;CIEND=-384,384;SOMATIC;SOMATICSCORE=45	PR	123,0	355,12
17	27986781	MantaDEL:259222:0:0:0:0:0	TGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCAGACATTTTATATATATTTTTTGAGACGGAGTCTCGCTCTATCGCCAAGGTGGAGTGCAGTGACGTGATCTTGGCTCACTGCAATCTCCACCTCCTGGGTTCAAGTGATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACGCACCATCATACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGTTTCACCATGTTGGCCAGGATGGTCTCAATTTCCTGACCTC	T	.	MinSomaticScore	END=27987081;SVTYPE=DEL;SVLEN=-300;CIGAR=1M300D;CIPOS=0,53;HOMLEN=53;HOMSEQ=GTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCAC;SOMATIC;SOMATICSCORE=21	PR:SR	38,4:20,2	108,9:64,22
17	80317387	MantaDEL:265063:0:0:0:0:0	TCCCTCAGGTTCCCTCAGTTTCCCTCAGGTTCCCTCAGTTTCCCTCAAGTTTCCCTCAGTTTC	TT	.	PASS	END=80317449;SVTYPE=DEL;SVLEN=-62;CIGAR=1M1I62D;SOMATIC;SOMATICSCORE=31	PR:SR	3,0:15,0	13,0:52,14
17	80317387	MantaDEL:265070:0:0:0:0:0	TCCCTCAGGTTCCCTCAGTTTCCCTCAGGTTCCCTCAGTTTCCCTCAAGTTTCCCTCAGTTTC	TT	.	PASS	END=80317449;SVTYPE=DEL;SVLEN=-62;CIGAR=1M1I62D;SOMATIC;SOMATICSCORE=31	PR:SR	3,0:15,0	13,0:52,14
18	66379460	MantaDEL:271539:0:1:0:0:0	C	<DEL>	.	PASS	END=66382825;SVTYPE=DEL;SVLEN=-3365;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=AG;SOMATIC;SOMATICSCORE=92	PR:SR	67,0:73,0	117,29:103,13
X	1365238	MantaDEL:273050:0:0:0:0:0	TCCCAGGGACGCCTGGAGCCCCCAGGAGCTCGAAGAGGCAGGAAGGATCCTCCCCTAGAGCTTCTAAAAGGAACCAAACCAAACTGCAGTGGGTTGAATGGGGATCCCCCAAAGACATGTCCAGGTCCTAAACCTTAGAATCCGTGAATAGGACCTCATTTGGAAATAGGGTCTTTGCAGATGTGTTTAAGGGAAGGATCTCAAAATGAAATCGCCTTGCATTGGAGTTGGACTCTAAATCCAATGAGGGGTGACCCCATAAGAGACAAAGAGGAGACACAGACACAGAGGAGGCCACGTGGAGATGGTGACAGAGACTGCAGTGAGGCGGCCACAAA	T	.	MinSomaticScore	END=1365575;SVTYPE=DEL;SVLEN=-337;CIGAR=1M337D;CIPOS=0,29;HOMLEN=29;HOMSEQ=CCCAGGGACGCCTGGAGCCCCCAGGAGCT;SOMATIC;SOMATICSCORE=26	PR:SR	37,1:20,4	60,0:56,14
19	3992371	MantaDEL:273618:0:1:0:0:0	CCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCACCGCACCTGGCCTGTTTTCATTTTTAAACTTTTTTTCTTCTTTCAACTTATTTTAAGATCTGGGGTACATGTGCAGGATGTGCAGGTTTGTCATACAGGTAAATGTGTGCCATGATTGTTTGCTGCACAGATCAACCCATCACCTAGGTATTAAGCCCCACATCCCTTAACTATTCATCCTGATGCTCTCCCCGCCCCCCACCCCCACGTCCTAAATTTTTTTTTTTTTTTTTTTTTGAGAAGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCCATCTCAGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTCCCTCAGCCTCCCGAGCAGCTGGGACGACAGGCGCCCACCACCACACCTGGCTAATTTTTTATATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCTTGATCCACCCACTTTGGT	C	.	MinSomaticScore	END=3992877;SVTYPE=DEL;SVLEN=-506;CIGAR=1M506D;CIPOS=0,25;HOMLEN=25;HOMSEQ=CTCCCAAAGTGCTGGGATTACAGGC;SOMATIC;SOMATICSCORE=14	PR:SR	60,0:42,1	137,1:96,10
19	5760587	MantaDEL:273802:0:0:0:1:0	TGCCAGGGGCTGGGGAGGGGGATGGGGAGTGAGTGTTTCATGAGGACCAAGTTTCAGTTGGGGAAGATGAGAAACTTCTGGAGATGGATGGTGGTGATGGTTGCACAACTCTGTGAATGTAGTTAATATTGATGAATGGTGCACTTAAAATGGTTAAGATGGAAAATTTGGGGCCCGGTGTGACGGCTCACGCCTATAATCACAGCAACTCAGGAGATCCATAGCAACTCAGGAGACTGAGGCAGGAGGATTGCTTGAGCTCAGGAGTTTCAGGTTGTAGTAAGTTATGGGCATGACAATGTACTCCAGCCTGGGCAATAGAGCAAGACCCTGACCCTGGGCGACAGAGCGAGACCCCCATCTCAAAAAAAAAAAAAATTTCTGAATGCTGACTGAAAGCCTTCTATCGAGTTTTCACTGCTTCTTGAGTCAGTTTTGTGAAGTTTTTTTTATTTGTTTTGTTTTTGTTTTTTTTTTTGAGACGAAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCATAATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCCATTCTCCTGCCTTAGCAGTGGCATGATCTCGGCTCACTGCAATCTCTGCCTCCTGGGTTCAAATGATTCTCTTGCCTCAGCCTCTCGAGTAGCTGGGATTATAGGCATGTGCCACCACGCCCAGCTAATTTCTGTATTTTTACTAGAGACGGGGTTTCACCATGTTAGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGGTCCGTCCGCGTCAGCCTCCCAAAGTGCTAGAATTACAGGCATGAACCACCGCACCCGGCCAGTGTTCAGAAATTAATGGATGGATGGATGGATGGATGGATGGCTGGCTGGCTGCCTGGCTG	TCTTAGGAAACTTACAATCATGGCGGAAGGC	.	PASS	END=5761474;SVTYPE=DEL;SVLEN=-887;CIGAR=1M30I887D;SOMATIC;SOMATICSCORE=31	PR:SR	62,0:40,1	142,0:112,12
19	16092622	MantaBND:275380:0:1:0:0:0:0	G	G]19:16094122]	.	PASS	SVTYPE=BND;MATEID=MantaBND:275380:0:1:0:0:0:1;IMPRECISE;CIPOS=-322,322;EVENT=MantaBND:275380:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=30;JUNCTION_SOMATICSCORE=0;BND_DEPTH=36;MATE_BND_DEPTH=54	PR	80,0	206,3
19	16094122	MantaBND:275380:0:1:0:0:0:1	T	T]19:16092622]	.	PASS	SVTYPE=BND;MATEID=MantaBND:275380:0:1:0:0:0:0;IMPRECISE;CIPOS=-286,287;EVENT=MantaBND:275380:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=30;JUNCTION_SOMATICSCORE=0;BND_DEPTH=54;MATE_BND_DEPTH=36	PR	80,0	206,3
19	16092418	MantaBND:275380:0:1:1:0:0:0	A	[19:16094109[A	.	PASS	SVTYPE=BND;MATEID=MantaBND:275380:0:1:1:0:0:1;IMPRECISE;CIPOS=-300,301;EVENT=MantaBND:275380:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=30;JUNCTION_SOMATICSCORE=0;BND_DEPTH=56;MATE_BND_DEPTH=57	PR	90,0	205,4
19	16094109	MantaBND:275380:0:1:1:0:0:1	G	[19:16092418[G	.	PASS	SVTYPE=BND;MATEID=MantaBND:275380:0:1:1:0:0:0;IMPRECISE;CIPOS=-289,289;EVENT=MantaBND:275380:0:1:0:0:0:0;SOMATIC;SOMATICSCORE=30;JUNCTION_SOMATICSCORE=0;BND_DEPTH=57;MATE_BND_DEPTH=56	PR	90,0	205,4
19	34741394	MantaDEL:277434:0:0:1:0:0	CCACTGCACTCCAGCCTGGGTGACAGAGTGAGATTCCATCTCAAAAATTGATAAACAAATAAAATAAAGAAAGATGTCTATAGTTGTCAACCTGCAGTGAATCCTCAGTACTACTGGGAAATTCTACCATGTTTCTTTTGTCCACTCACCTTTGTGCTTCCAGACCTTTCCCACTCCCCTCACTCTTTGCTGCAGTCTAAGGTAAACCTACCACCAAGCATTTTATTTATGGATTTATGTATTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCATGGCT	C	.	MinSomaticScore	END=34741693;SVTYPE=DEL;SVLEN=-299;CIGAR=1M299D;CIPOS=0,7;HOMLEN=7;HOMSEQ=CACTGCA;SOMATIC;SOMATICSCORE=19	PR:SR	65,2:55,0	125,4:104,6
19	53801931	MantaBND:279863:0:1:0:0:0:0	C	C]19:53788614]	.	PASS	SVTYPE=BND;MATEID=MantaBND:279863:0:1:0:0:0:1;IMPRECISE;CIPOS=-439,440;SOMATIC;SOMATICSCORE=47;BND_DEPTH=42;MATE_BND_DEPTH=42	PR	75,0	214,14
19	53788614	MantaBND:279863:0:1:0:0:0:1	G	G]19:53801931]	.	PASS	SVTYPE=BND;MATEID=MantaBND:279863:0:1:0:0:0:0;IMPRECISE;CIPOS=-433,434;SOMATIC;SOMATICSCORE=47;BND_DEPTH=42;MATE_BND_DEPTH=42	PR	75,0	214,14
19	53945821	MantaDEL:279904:0:1:0:0:0	G	<DEL>	.	MinSomaticScore	END=53983161;SVTYPE=DEL;SVLEN=-37340;IMPRECISE;CIPOS=-269,269;CIEND=-256,257;SOMATIC;SOMATICSCORE=10	PR	67,1	172,7
19	56711878	MantaDUP:TANDEM:280396:0:1:0:0:0	G	<DUP:TANDEM>	.	MinSomaticScore	END=56750112;SVTYPE=DUP;SVLEN=38234;IMPRECISE;CIPOS=-239,239;CIEND=-321,322;SOMATIC;SOMATICSCORE=17	PR	80,1	181,8
20	13160727	MantaDEL:282317:0:1:0:0:0	G	<DEL>	.	PASS	END=13164099;SVTYPE=DEL;SVLEN=-3372;CIPOS=0,3;CIEND=0,3;HOMLEN=3;HOMSEQ=GTC;SOMATIC;SOMATICSCORE=166	PR:SR	68,0:62,0	130,70:117,40
20	14962955	MantaDEL:282487:0:2:0:0:0	G	<DEL>	.	PASS	END=15013947;SVTYPE=DEL;SVLEN=-50992;CIPOS=0,3;CIEND=0,3;HOMLEN=3;HOMSEQ=TGC;SOMATIC;SOMATICSCORE=107	PR:SR	68,0:69,0	140,44:144,24
20	15000622	MantaDEL:282487:0:1:0:0:0	A	<DEL>	.	PASS	END=15013841;SVTYPE=DEL;SVLEN=-13219;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=AT;SOMATIC;SOMATICSCORE=134	PR:SR	72,0:73,0	120,38:97,25
20	14988824	MantaDEL:282494:0:1:0:0:0	A	<DEL>	.	PASS	END=15108817;SVTYPE=DEL;SVLEN=-119993;CIPOS=0,1;CIEND=0,1;HOMLEN=1;HOMSEQ=T;SOMATIC;SOMATICSCORE=61	PR:SR	64,0:58,0	211,16:158,19
20	48395962	MantaDEL:285799:0:0:0:3:0	CTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCACCTCTACTAAAAGTGCAAAATTAGCCGGACATGGTGGCACACACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCATGAGAATCGCTTGAACCCAGAAGGTGGAGGTTGCAGCAAGCCGAGACAGCACCACTGCGCTCCAGCCTGGAAAACAAGAGGAAAACTTTGTCTCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGGCCCCAGCACAA	C	.	MinSomaticScore	END=48396290;SVTYPE=DEL;SVLEN=-328;CIGAR=1M328D;CIPOS=0,36;HOMLEN=36;HOMSEQ=TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCC;SOMATIC;SOMATICSCORE=12	PR:SR	55,0:39,5	159,3:114,11
20	48395962	MantaDEL:285800:0:0:0:2:0	CTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCACCTCTACTAAAAGTGCAAAATTAGCCGGACATGGTGGCACACACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCATGAGAATCGCTTGAACCCAGAAGGTGGAGGTTGCAGCAAGCCGAGACAGCACCACTGCGCTCCAGCCTGGAAAACAAGAGGAAAACTTTGTCTCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGGCCCCAGCACAA	C	.	MinSomaticScore	END=48396290;SVTYPE=DEL;SVLEN=-328;CIGAR=1M328D;CIPOS=0,36;HOMLEN=36;HOMSEQ=TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCC;SOMATIC;SOMATICSCORE=12	PR:SR	55,0:39,5	159,3:114,11
21	9540563	MantaDEL:287558:0:0:0:3:0	TCCTCGCCGCTGTCCGCCTCTCAGCCGCTGTGCCCCTCTCCGCCGCTGTCCGCCTTTCCGCCGCGCCGCCGCTGTCCGCCTCTCCGCCG	T	.	MinSomaticScore	END=9540651;SVTYPE=DEL;SVLEN=-88;CIGAR=1M88D;CIPOS=0,1;HOMLEN=1;HOMSEQ=C;SOMATIC;SOMATICSCORE=23	PR:SR	1,0:11,0	18,0:34,9
21	42818739	MantaDEL:290943:0:1:0:5:0	T	<DEL>	.	PASS	END=42820831;SVTYPE=DEL;SVLEN=-2092;CIPOS=0,5;CIEND=0,5;HOMLEN=5;HOMSEQ=AGGAA;SOMATIC;SOMATICSCORE=39	PR:SR	75,0:44,0	178,13:102,2
22	20718870	MantaBND:291988:0:1:0:0:0:0	G	[22:18655417[G	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:291988:0:1:0:0:0:1;IMPRECISE;CIPOS=-263,263;SOMATIC;SOMATICSCORE=15;BND_DEPTH=26;MATE_BND_DEPTH=45	PR	50,1	248,13
22	18655417	MantaBND:291988:0:1:0:0:0:1	A	[22:20718870[A	.	MinSomaticScore	SVTYPE=BND;MATEID=MantaBND:291988:0:1:0:0:0:0;IMPRECISE;CIPOS=-266,267;SOMATIC;SOMATICSCORE=15;BND_DEPTH=45;MATE_BND_DEPTH=26	PR	50,1	248,13
22	29761307	MantaDUP:TANDEM:293508:1:2:0:0:0	C	<DUP:TANDEM>	.	MinSomaticScore	END=29817400;SVTYPE=DUP;SVLEN=56093;IMPRECISE;CIPOS=-237,238;CIEND=-242,242;SOMATIC;SOMATICSCORE=14	PR	75,1	219,8
X	1938908	MantaDEL:296937:0:0:33:0:0	AGTAATATGATACTACCGCCACATGAGAGCAGTCATAATCACAACAGTAATATGATACTACCGCCGCATGAGAGCAGTAATCACAACAGTAATATGATACTACCGCCACATGAGAGCAGTCATAATCACAACAGTAATATGATACTACCACTACATGAGAGCAGTCATAATC	A	.	MinSomaticScore	END=1939079;SVTYPE=DEL;SVLEN=-171;CIGAR=1M171D;SOMATIC;SOMATICSCORE=28	PR:SR	8,0:27,0	0,0:9,8
X	30812564	MantaDUP:TANDEM:298722:1:1:16:0:0	G	<DUP:TANDEM>	.	MinSomaticScore	END=30813800;SVTYPE=DUP;SVLEN=1236;IMPRECISE;CIPOS=-284,285;CIEND=-413,413;SOMATIC;SOMATICSCORE=18	PR	41,0	125,7
X	31196943	MantaDEL:298762:0:1:0:0:0	A	<DEL>	.	PASS	END=31216210;SVTYPE=DEL;SVLEN=-19267;SVINSLEN=8;SVINSSEQ=ATGTAGTG;SOMATIC;SOMATICSCORE=103	PR:SR	26,0:19,0	65,47:45,40
X	31301203	MantaDEL:298761:0:1:0:0:0	T	<DEL>	.	PASS	END=32038749;SVTYPE=DEL;SVLEN=-737546;SVINSLEN=15;SVINSSEQ=TATTCATTATTATAA;SOMATIC;SOMATICSCORE=105	PR:SR	43,0:30,0	72,38:56,25
X	32098531	MantaDEL:298805:0:1:0:0:0	A	<DEL>	.	PASS	END=32201250;SVTYPE=DEL;SVLEN=-102719;CIPOS=0,2;CIEND=0,2;HOMLEN=2;HOMSEQ=CA;SOMATIC;SOMATICSCORE=123	PR:SR	33,0:18,0	5,37:6,25
X	32077855	MantaDEL:298795:0:1:0:0:0	G	<DEL>	.	PASS	END=32293096;SVTYPE=DEL;SVLEN=-215241;SVINSLEN=3;SVINSSEQ=GGC;SOMATIC;SOMATICSCORE=125	PR:SR	45,0:26,0	59,37:47,27
X	34059778	MantaDEL:298907:0:1:0:0:0	C	<DEL>	.	PASS	END=34062704;SVTYPE=DEL;SVLEN=-2926;SVINSLEN=10;SVINSSEQ=ATTATAGTAT;SOMATIC;SOMATICSCORE=120	PR:SR	25,0:31,0	0,21:0,31
X	54458396	MantaDEL:300042:0:1:0:0:0	TTGCAGTGAGCCCGGATTATGCCACTGCACTCCAGCCTGGCAACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGCAGTCCTAAGAAACTGCTCCTTTCTTCCATTAAATTTTTTTTTTTCAGATAGGGTCTCACTCTGTTGCCCAGGCTGGAG	T	.	MinSomaticScore	END=54458562;SVTYPE=DEL;SVLEN=-166;CIGAR=1M166D;CIPOS=0,7;HOMLEN=7;HOMSEQ=TGCAGTG;SOMATIC;SOMATICSCORE=24	PR:SR	10,0:12,0	29,0:51,7
X	69821368	MantaDEL:300621:0:0:0:0:0	TGAGGCCAGCATCATTCTTTTTTTTTTTTTTTTTTTTTATTGATCATTCTTGGGTGTTTCTCGCAGAGGGGGATTTGGCAGGGTCATAGGACAATAGTGGAGGGAAGGTCAGCAGATAAACAAGTGAACAAAGGTCTCTGGTTTTCCTAGGCAGAGGACCCTGCGGCCTTCTGCAGTGTTTGTGTCCCTGGGTACTTAAGATTAGGGAGTGGTGATGACTCTTAACGAGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTTAACCCTGAGTGGACACAGCACATGTTTCAGAGAGCACAGGGTTGGGGATAAGGTCACAGATCAACAGGATCCCAAGGCAGAAGAATTTCTCTTAGTACAGAACAAAATGAAAAGTCTCCCATGTCCACTTCTATCCACACAGACCCGGCAACCATCCGATTTCTCAATTTTTTCCCCACCCTTCCCGCCTTTCTATTCCACAAAACCGCCATTGTCATCATGGCCCATCCCCAATGAGCCGCTGGGCACACCTCCCAGATGGGGTCCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAAGCGCCCCTCACCTCCTGGATAGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGATGGGGCGGCTG	T	.	MinSomaticScore	END=69822051;SVTYPE=DEL;SVLEN=-683;CIGAR=1M683D;CIPOS=0,17;HOMLEN=17;HOMSEQ=GAGGCCAGCATCATTCT;SOMATIC;SOMATICSCORE=16	PR:SR	42,0:20,0	117,0:53,5
