##fileformat=VCFv4.1
##phasing=none
##INDIVIDUAL=TRUTH
##SAMPLE=<ID=TRUTH,Individual="TRUTH",Description="bamsurgeon spike-in">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=PRECISE,Number=0,Type=Flag,Description="Precise structural variation">
##INFO=<ID=CT,Number=1,Type=String,Description="Paired-end signature induced connection type">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Somatic mutation in primary">
##INFO=<ID=GERMLINE,Number=0,Type=Flag,Description="Germline structural variant">
##INFO=<ID=CHR2,Number=1,Type=String,Description="Chromosome for END coordinate in case of a translocation">
##INFO=<ID=UNKNOWN_LEN,Number=0,Type=Flag,Description="Unknown the length of SV">
##INFO=<ID=CONSENSUS,Number=1,Type=String,Description="Breakpoint consensus sequence">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=INS,Description="Insertion">
##ALT=<ID=TRA,Description="Translocation">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SPIKEIN
1	713519	N	.	<TRA>	5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCTGAGCCCAAGCCATCCATCCTCCCGCCTCGGCGGCGCCAGACATAGTTTTCTATTTTTGACCAACATAAACACTGTGCTGGGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCCGTGTTCTGCTTGAAA;SVTYPE=TRA;CHR2=4;END=120375574;SVLEN=0	GT	./.	E4394080	contig1	size218	2	cov1.39	100	1	40	1	40	59	0	0	0	0	107	3	17.6666666666667	1	43	33	3	47	2	57	3	0	4	0
1	2585990	N	.	<DUP>	31.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTGCCCGGACCCGCCCGCACACTCCCAGGCGAGCAGCTGACAGCCTGGAACAGCACCCATACGCCCAGATGAGAATCTGACGGCCTGGAAAAGCACCCTGCACCCCCAGGTGCGCACCTGACAGCCTGGAACAGCACCCACACCCCCAGGCGAGCATCTGACCGGACGGAGCAGCACCCACAACCCCAGGCGGGCGTCTAACAGCCTGTATCAGCACCCACACCCCCAGAGGAGAGGCGGCCAGCCGGGAACCGAACCCAAAAAACCAGGGGAAAGACCAGA;SVTYPE=DUP;CHR2=1;END=2632394;SVLEN=46404	GT	./.	E2809384	contig1	size282	2	cov1.07	1184	10	21.2	4	46.25	452	2	12	0	0	77	6	7.83333333333333	0	0	42	4	17.25	2	34.5	7	0	7	0
1	2591164	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGCAGGGCCCCCACCCCCACGGGAGCCTCCGCCCGTCCCGAGCAGGACCCACACCCCCAGGGGAGCATCCGAACGCCCGGAGCAGGCCCCACCACCCCAGGTGAGCATCCGACAGCCTGGAACAGCACGCTGCCCCCCCAGGTGAGCATCTGACAGCCCGCAGCATCACCCACATGCACAGGTGAGAATCTGACAGCCCGGAGCAGCACCCACACCCCCAGGGGAGCATCTGATGGTTTAGAGCAGTACCCACACCCACAGGTGAGCATCTGACAGCCTGGAACA;SVTYPE=DEL;CHR2=1;END=2612744;SVLEN=-21580	GT	./.	E3058066	contig1	size286	2	cov1.06	1103	27	1.77777777777778	0	0	491	9	0	0	0	676	6	0	0	0	290	1	0	0	0	8	0	4	0
1	2776029	N	.	<INV>	7	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGGGGGTAGGGGGAGGGAGGGGGGGGAAGGGGGAGGTAGGGAGGAGGGGTGTGGGAAGGAGAGGGGGACCGGGGAGGTGTACACGCGGAGGGAGGACGGGGGGGGGAGGGGGGGGGAAGGAGGAAGGAAGGAGGGAGGAAGGAGGGAGGAAGGAGGGAGGAAGGAGGGAGGAAGAGGGGGGGAGGGGGGGGGAAGGAGGGAGGAAGAGGAAGGAAGGAGGGAGGAAGGAGGGAGGAAGGAGGGAGGAGGGAGGGGGGAAGGGGGGAGGAGGGG;SVTYPE=INV;CHR2=1;END=241838526;SVLEN=239062498	GT	./.	E1239950	contig1	size275	2	cov1.10	67	5	12.8	1	59	37	5	7.8	0	0	116	8	17.375	2	60	32	2	0	0	0	3	0	9	0
1	2776125	N	.	<INV>	7	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGGGGGTAGGGGGAGGGAGGGGGGGGAAGGGGGAGGTAGGGAGGAGGGGTGTGGGAAGGAGAGGGGGACCGGGGAGGTGTACACGCGGAGGGAGGACGGGGGGGGGAGGGGGGGGGAAGGAGGAAGGAAGGAGGGAGGAAGGAGGGAGGAAGGAGGGAGGAAGGAGGGAGGAAGAGGGGGGGAGGGGGGGGGAAGGAGGGAGGAAGAGGAAGGAAGGAGGGAGGAAGGAGGGAGGAAGGAGGGAGGAGGGAGGGGGGAAGGGGGGAGGAGGGG;SVTYPE=INV;CHR2=1;END=241838526;SVLEN=239062402	GT	./.	E1239950	contig1	size275	2	cov1.10	290	8	6.75	0	0	137	4	11.25	1	30	116	8	17.375	2	60	32	2	0	0	0	3	0	9	0
1	5220377	N	.	<TRA>	9	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACACATACACATACTAACACATGCACACACTAACACATACACATACACACATACTAACACATACACACACACTAACACATACACATACATATATACTAACATACACATACACACATACTAACACATACACACACACATACACATACACATACAGATATACTAACACATACACATACACACACTCACACACACACCCACACCCACACACA;SVTYPE=TRA;CHR2=6;END=96918772;SVLEN=0	GT	./.	E3525624	contig1	size209	2	cov1.44	641	0	0	0	0	199	0	0	0	0	106	5	2.2	0	0	39	0	0	0	0	22	2	21	2
1	5220391	N	.	<TRA>	4.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTAACACATACACATACACACATACTAACACATACACACACACTAACACATACACATACATATATACAAACATACACATACACACATACAAACACATACACACACACATACACATACACATACAGATATACTAACACATACACACACACACATACTAACACATACACATACACACATACTAACACATACACATACATATATACTAACACACACTAACACATACACACATACTAACACACACACACACTAACACACACACACACTAACACATACACATACACACAA;SVTYPE=TRA;CHR2=6;END=96918772;SVLEN=0	GT	./.	E216809	contig14	size285	2	cov1.06	533	2	0	0	0	154	0	0	0	0	106	5	2.2	0	0	39	0	0	0	0	22	2	21	2
1	12431934	N	.	<TRA>	4	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCATTTATCAGTACATTTTTCCTTTTCGTGGCGAAATAATATTCCATTGTATGTCTATACCACCCTTTGCATATACGTTCATCCACTGATGGACATTTGGGCTGCTTCCACCATTTGGCTGTTGTAAACAGTGTTGCTATGAACATGCATGTACAAGTATTTGTTCGAGTCCTTGTTTGCACTTCTTTTGGGTGTATACCTAGGAATGGAATTGCAGCAATCATATGGCAATTCTATGCTTACGTT;SVTYPE=TRA;CHR2=X;END=114672165;SVLEN=0	GT	./.	E223170	contig1	size247	2	cov1.22	347	24	5.79166666666667	0	0	106	4	0	0	0	204	0	0	0	0	54	1	0	0	0	8	0	3	0
1	23389704	N	.	<TRA>	8	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACACACACACGCAACCACAACACCTGCACACACCCACTCACACACAGACACACACACACCCCGCACACACACACACACACACACACACACATACACACACACCCACCCCACACACACACACACATACACACTCACATACAGACACAACCACACCACACTCACACACACACATACACACTCACATACAGACACAACCACACCACACACACACACACACACACACACACACACACACACACCCACCCCACACAAACACACCGAGACCGGCAAAAGTGCAGAGCTC;SVTYPE=TRA;CHR2=6;END=44149853;SVLEN=0	GT	./.	E413660	contig5	size283	2	cov1.07	86	0	0	0	0	34	0	0	0	0	217	3	5.33333333333333	0	0	87	1	3	0	0	10	0	11	1
1	23389748	N	.	<TRA>	8	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACACACACACGCAACCACAACACCTGCACACACCCACTCACACACAGACACACACACACCCCGCACACACACACACACACACACACACACATACACACACACCCACCCCACACACACACACACATACACACTCACATACAGACACAACCACACCACACTCACACACACACATACACACTCACATACAGACACAACCACACCACACACACACACACACACACACACACACACACACACACCCACCCCACACAAACACACCGAGACCGGCAAAAGTGCAGAGCTC;SVTYPE=TRA;CHR2=6;END=44149853;SVLEN=0	GT	./.	E413660	contig5	size283	2	cov1.07	124	1	0	0	0	48	0	0	0	0	217	3	5.33333333333333	0	0	87	1	3	0	0	10	0	11	1
1	25075555	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGTCACCCGCCAACACATCCTACTAATTTTTTGTGTTTTTAGTAGAAATGCGGTGTCGCCATGCGGCCCAGGCTGGTCTTGAACACCTGACCTCATGATCCACCTGCCTCCACGGCTGAAAGTGCTGGGATTACAGACTTGATCAACCGCGCCCAGCCAAATATCTTCTTTTGAAAAGAGTCTGTTTATATTCTGTGCCCACTTTTTGATGGTTTTTTTTTGTGTGTGTGTGAATTTGTTTAAGTTCTTTGTAGATTCTGGATATTAGACCTCTGACACATGGATAGAGTGCAAAAATTTTCTTTCACTCTGTAGGTTGCCTGGTCACTCTGGTGATAGCTTCTTTTGCTGTGCAGAAGCTCGTTAGTTTAGTTAGATCTCATTTGTCAATTTTAGCTTTTGTTGTGAT;SVTYPE=TRA;CHR2=X;END=141107396;SVLEN=0	GT	./.	E2356643	contig1	size410	7	cov2.58	186	12	0	0	0	55	3	0	0	0	53	151	0	0	0	18	37	0	0	0	19	1	20	1
1	28193228	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTGGTACTGTATTAGGGAAGTCATAGCAAAGCGTTACAGCCTATTAGGACACAGATAAGATGTTCCCTGTAGCGGCTGGGCGCGGTGGCTTACACCTGTAATCCTAGCACTTTCGGAGGCCGAGGCGAGTGGATCACGAGGTCAGGAGATCGAGACCATCCTAGCTAACACGGTGAAACTCTGTCTCTACTAAAAAAAAAAACCACACACACACAGAGAAAAAAAATTAGCCGGGCGTGGTGACAGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAAGCAGGAAGATGGCGTGAACCCAGGAGGCAGAGTGCAGTGAGCCGAGACTGCACCACTGCACTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAA;SVTYPE=TRA;CHR2=4;END=74055839;SVLEN=0	GT	./.	E701572	contig1	size377	3	cov1.20	77	0	0	0	0	32	0	0	0	0	150	0	0	0	0	41	0	0	0	0	5	0	5	0
1	28884596	N	.	<TRA>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCGCCCAGGCTGGAGTGCAGTGGAATGATCTCGGCTCACTGCAACCTCCACCTCCCAAATTCAAGCAGTTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGTCATGTGCCACCATGCCTGGCTAATTTTTTTTTTTTTTTTTTTTTTTTTTGAGTCTCGCTCTGTCACCCAGGCTTGGGTGCAGTGGCACCATCTTGGCTAACTGCAACCTCCGCCTCCCGGGGTCAAGCGACTCTCCTGCCTCACCTTCCCAAGTTGCTGGGACCACAGACCCC;SVTYPE=TRA;CHR2=14;END=21805912;SVLEN=0	GT	./.	E3227222	contig1	size280	2	cov1.08	97	13	51.9230769230769	12	54.75	41	0	0	0	0	114	2	60	2	60	28	0	0	0	0	0	0	0	0
1	33154837	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGAGCCGTTGTCCTTGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGTGAGTCACTGTCACCCAGGCTGGATTGCAGTGGCACAATCTCAGCTCACTGCAACCTCTGCTGCCCAGGTTCAAGCTATTCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTACCACCATGCCTGGCTAATTTTTTTGTAGTTCTAGCAGAG;SVTYPE=TRA;CHR2=16;END=27988881;SVLEN=0	GT	./.	E590726	contig2	size221	2	cov1.37	98	22	48.9090909090909	19	53.2631578947368	30	6	58.1666666666667	6	58.1666666666667	73	46	55.7173913043478	46	55.7173913043478	23	8	52	7	57.1428571428571	4	0	3	0
1	37259413	N	.	<TRA>	9	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGTGGATGGTTGGGTGGATGGTGGGGTGGGGGGGGGGATGGATGGGTGGATGGATACATGGATGCGTGGGTGGGTGAAATGATGAATGGGTGGGTGGATGGATGGATGGGTGGATGGATGGGTGAATGGATGGATGGAGGATGAGTGGGTGGAGAGGTGGATGGATGGATGAATTGGTGGGTAAGTGGGTGGATGCTAGAAGGATATATGGATGATGAATGGATGAATGGATGCCTGAATGA;SVTYPE=TRA;CHR2=17;END=80105511;SVLEN=0	GT	./.	E1609925	contig1	size286	2	cov1.06	151	8	35.25	5	42.8	73	1	60	1	60	94	5	33.6	2	59.5	29	0	0	0	0	4	0	4	0
1	42010331	N	.	<TRA>	36.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCTGGCTCTCATGGTTGAAGATGTTGCTAGTGAGAGAACTATTCTCTAGGGCATGGAATAACTGGACAGGGAGGGGGATGTCTCTCCACAGCAAACCCTCACCATAGGCCCCAGTGAAGCACCACGACCACCTCTACCACCATCACTACCATCACCACCACCATCACCACCACCACCATCAGCACCACGACCAGCACCACCACCACGACCACCACGGCGGCCGCCGCCACCACCACAACCACTACCACCACCACCACCAC;SVTYPE=TRA;CHR2=13;END=22299997;SVLEN=0	GT	./.	E4445911	contig2	size261	2	cov1.16	95	1	37	1	37	44	0	0	0	0	133	2	12.5	0	0	57	1	0	0	0	4	0	11	1
1	42010492	N	.	<TRA>	30	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCACCACCACCACCACTATAACCACCATCATCATCACCACCACTACCACTACTATAACCATCACCACCATCACTGCTATAACCACCACCACCACCACTATAACCATCACCACCATCACCACTATAACCACCACTACCACCACCACCACTATAACCACCACCACCACCACTATAACCACCATCATCACCACCACCACTACCACCACCCCCACCAACACCACCACCACTGCTATCACCACCACCACCACCACCACCACCACCACCACCACCACC;SVTYPE=TRA;CHR2=13;END=36532269;SVLEN=0	GT	./.	E2938658	contig1	size272	2	cov1.11	189	5	29.6	3	37	77	6	7.16666666666667	1	40	300	86	46.7674418604651	68	56.1470588235294	114	41	49.7560975609756	34	56.7352941176471	4	0	3	0
1	49056788	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTGTCTGTGGGGGAGTGTGTGTGTGTGGGTGTGTGTGGGTGCGGGAGCGTGTGTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGGGGGGGTGGGTGTGGGTGGGTGTGG;SVTYPE=TRA;CHR2=19;END=47333454;SVLEN=0	GT	./.	E1194639	contig2	size286	2	cov1.06	124	0	0	0	0	36	0	0	0	0	104	0	0	0	0	41	0	0	0	0	4	0	3	0
1	50536138	N	.	<TRA>	3	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGGAGAGGAGATTGTGCCACGGCACCCCAGACAGAGAAAAAAAAGGAAAACCCCGTCAAAAAAAAAAAAAAAAAAAAAAAAAGCTAAAGCCAGGCGCAGTGGCTAAAGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCATGAGGTCAGGAGTTCGAGACCAGGCTGACCAAAATGGTGAAACCCCGTCTCTGCTAAA;SVTYPE=TRA;CHR2=3;END=185078599;SVLEN=0	GT	./.	E1086271	contig1	size209	2	cov1.44	79	35	1.8	0	0	40	5	0.4	0	0	159	0	0	0	0	52	0	0	0	0	4	0	7	0
1	72034546	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGGAGGATTGCTTGAGCCCAGTAGGAGAGAGAGGTTTCAGTTAGCCGAGATTGTGCTACTAGCCTGGGGGACAGAGTGAGATCCTGTCTCAAGAAAAAAAAAAATAGATATACGTAAACACACACACACACACACACACACACACACACATATGTATACATATATACACATACACACATACATATAAAACATAATTCTTATAATTTTATTTTATATGTGCATAAACACATATATACTCACATATATATAATTTACACATA;SVTYPE=TRA;CHR2=12;END=77123609;SVLEN=0	GT	./.	E2856884	contig1	size261	2	cov1.16	114	0	0	0	0	47	0	0	0	0	136	11	60	11	60	54	0	0	0	0	0	0	0	0
1	87337011	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACTTTGTAAAATATTTAAAGAGATTTATTCTGAGCTAAATGTAAGGACCATGATCTGTGACACAACCTCAAGAGGTCCTGAGAACATGTGCCCAAGGTGGTTGGGTGACAGCCTGGTTTTATATGTTTTAGGGAGACATAAGATATCAATCAGTACATGTGAGGTACATATTGGTTTGGTCTGGAAAGGCAAGACAATGTGGAGCTGTGGGGGAGGTGGTGAGGAAAAGGGCTTCCAGGTCATAGGTAGATTTAAAGATTTTCTGATTAGCAATTGGTTTAAAGAGTTAAGTTATTATCTAAAGACTGGGAATCAATAGAAAAGAGTGTCTGGGTTAAGATAACGGGCTGTAGAAACCAAGGTTTTTATTATGTAGATGAAGTCTCGTAGGTTGCAGCCCTTAGATACAATAGATGGCAAATGCTTGCTATTCAGATCTTTAAAAGGGGGAGAATATAATGAGCCATGTCCAACAGCCCCCACTTCCGATCATGGTCTAAATTAGTTTTTCAGGTTTCTTTGGAATCATTTTTGCCAAAAGGGAGATCCATTTGGTTGGTTGGGGGGCTTAGAATTTTTTTGGTTTACATTCTTATATGTTTTAAAGGTTTTTTTCATCTTCTCTCTCATCTGGAGACCCCAGGGCTCCTCTCCAGGGTTCTTCCTCTGCATGGCCTTCTAGATCTCCTTGCTCTGAACTTAGAGTACTTATTGTCAATTGTTAAATTAACGACATTGTTTTTATTATCACCTTATCTTTTTATTTGTTGCAGATCTGTTTAAGCAGACTGTAGATGTATTGACATTAAAGAACTCAGTTTCCTCATATTCTCATGTAGCTTATCGAATGCCATGTGTATATAATGAGTACTCAAATATTTGTTAAAAGATTTATTTACTGCCTGTAAA;SVTYPE=TRA;CHR2=10;END=36119127;SVLEN=0	GT	./.	E1557344	contig1	size911	43	cov7.13	108	29	58.5172413793103	29	58.5172413793103	54	1	60	1	60	93	9	58.4444444444444	9	58.4444444444444	36	0	0	0	0	51	0	16	0
1	88473124	N	.	<TRA>	12.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACAATAAAACAATCTTTTTTATTTTTATTTTTTAGTGACAGGGTCTCACTCCGTTACCCAGGCTGGAGTGCAGTGGTGCAATCATAGCTTACGGTAGCCTTGAACTCCTGGGCTCCAGTGATCCTCCCACCTCAGTCTCCTGAGTGGCTAAAACTACAGGTGC;SVTYPE=TRA;CHR2=4;END=6257278;SVLEN=0	GT	./.	E897774	contig2	size164	2	cov1.84	81	12	0	0	0	41	1	0	0	0	75	15	13.7333333333333	0	0	50	6	16.1666666666667	0	0	4	0	6	0
1	88473177	N	.	<TRA>	12.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACAATAAAACAATCTTTTTTATTTTTATTTTTTAGTGACAGGGTCTCACTCCGTTACCCAGGCTGGAGTGCAGTGGTGCAATCATAGCTTACGGTAGCCTTGAACTCCTGGGCTCCAGTGATCCTCCCACCTCAGTCTCCTGAGTGGCTAAAACTACAGGTGC;SVTYPE=TRA;CHR2=4;END=6257278;SVLEN=0	GT	./.	E897774	contig2	size164	2	cov1.84	126	4	1	0	0	68	3	3.33333333333333	0	0	75	15	13.7333333333333	0	0	50	6	16.1666666666667	0	0	4	0	6	0
1	97692910	N	.	<TRA>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATCCCAGCTCTACTCGGGAGGCTGAGGCAGGAAAATGGCTTGAATCTGGGAGGTGGAGATTGCAGTGAGCCGAGATCGTGCCACGGCCACTGCGCTCCAGCCTGGCAACAGAGTGAGACTCTTATCTCAAAAAAAAAAAAAAAAAAAAAATCGGGACCAGGTTAATTTTGAAAACAGGAGACTTTGAGTAAAGCAGATGACCTTCCATAATGTGGGTGGGCCCCATCCCGGCAGTTGAAGGCCTTAATAGAAAAAAAGACCGACCTCCCTGGAGGG;SVTYPE=TRA;CHR2=14;END=90182747;SVLEN=0	GT	./.	E1692865	contig2	size277	2	cov1.09	87	0	0	0	0	46	0	0	0	0	84	34	55.5294117647059	34	55.5294117647059	17	0	0	0	0	0	0	1	0
1	109764613	N	.	<TRA>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTCTGTCACCTAGCCTGGAGTGCAGTGGAATGATCTTGGCTCACTGCAGTCTCTGCCTCCCAAGTAGCTGGGAGTACAGGCACACACCACCATGCTCAGCTAATTTTTTTTTTTGTGTGCATATATATATATATATATATGTTTTTTTTTGAGACAGGGTCTCACTGTATCACCCAGGAGGAGTGCAGTGGCTCCATGTCAGCTCACTACAACTCTCCACCCTCACCCCCTAGGCTCAAGCTTCCCACCCCAGCCTCCCCAGTAGCTGG;SVTYPE=TRA;CHR2=16;END=9452713;SVLEN=0	GT	./.	E4049754	contig1	size270	2	cov1.12	78	9	51.1111111111111	8	57.5	31	1	60	1	60	113	4	53.5	4	53.5	28	0	0	0	0	0	1	0	0
1	119964075	N	.	<TRA>	37	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATATATGTGTATATATATGTATATATATATATGTATATATATGTATATATATATATGTATATATATATATTTACACACACACACACACACAGAGGTCATAATTGGATTCCATATAATAATGATATCAATATGTCTATCAGTATTGGAGTTGGATTCTGGTACTTTCTCATGTGGGG;SVTYPE=TRA;CHR2=11;END=59973949;SVLEN=0	GT	./.	E82149	contig1	size176	2	cov1.72	69	10	14.1	0	0	16	0	0	0	0	56	2	20	1	40	18	0	0	0	0	22	2	14	0
1	121351907	N	.	<DEL>	16	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCGTTCTTTTTCTCCACTTGCAGATCCTCCGGAACGAGTGTTTCTCCCTGAACTCACCAGTGAAGTTTCAACTCTGGGAGTTGAATGCCAACGTCACGAAGAAGTTTCTGAGAATGCTTCTGTTTAGTTATGTGAGGTTTATCCCGTTTCCAAGGAAATCCTCAGAGAAGGCCAAACACCCAATGGCAAATTCTACAAAAAGTGTGTTTCGAAACTGCTCCATCCAAAACAACGTTCAGCTCTATTGGTTGAACTCAATCGTCACAAAGTTGTTCCTGAGAATG;SVTYPE=DEL;CHR2=1;END=121474653;SVLEN=-122746	GT	./.	E1441251	contig2	size285	2	cov1.06	4487	20	24.35	7	43.8571428571429	1754	13	20.5384615384615	3	43.6666666666667	108	2	0	0	0	46	0	0	0	0	6	0	6	0
1	121356053	N	.	<DEL>	1.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTGAAAGGAATCATCAAAATGTAGTTTCGGAGAATGCTTTCATCTAGATTTTTGAGTAGATAGTTGATTTTCCACCACAGGCCTCGAAACCCTCCAAATGTCCACTTGCAGACTCTAGAAAGAGAGGGTTTCAAAGCTGCTCTATCAAAAGGAAAGTACAACTCTGGGAGTTGAATGCAAGCCTCACAAAGAAGTTTCTGAGAAGGCTTCTGTTTAGTTTTTATGTGAAGATAATCCCGTTTGCATAGAAATCTTCACAGAGTTTCCCCTATCCCCGGGTAGG;SVTYPE=DEL;CHR2=1;END=121475386;SVLEN=-119333	GT	./.	E1521782	contig8	size284	2	cov1.06	1080	40	16.375	14	39.3571428571429	442	25	12.16	6	38.8333333333333	136	1	0	0	0	62	0	0	0	0	11	0	11	0
1	121356189	N	.	<DEL>	1.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTGAAAGGAATCATCAAAATGTAGTTTCGGAGAATGCTTTCATCTAGATTTTTGAGTAGATAGTTGATTTTCCACCACAGGCCTCGAAACCCTCCAAATGTCCACTTGCAGACTCTAGAAAGAGAGGGTTTCAAAGCTGCTCTATCAAAAGGAAAGTACAACTCTGGGAGTTGAATGCAAGCCTCACAAAGAAGTTTCTGAGAAGGCTTCTGTTTAGTTTTTATGTGAAGATAATCCCGTTTGCATAGAAATCTTCACAGAGTTTCCCCTATCCCCGGGTAGG;SVTYPE=DEL;CHR2=1;END=121475386;SVLEN=-119197	GT	./.	E1521782	contig8	size284	2	cov1.06	2384	33	14.030303030303	2	56	953	6	17	1	52	136	1	0	0	0	62	0	0	0	0	11	0	11	0
1	144038447	N	.	<INV>	7	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGTTCTATTGTACTTAAGCATTTATACAAACATTAGCTCCCTTAATCATCATAGTTGTAAATGGGACAAATCTTTTTTTTTTTTTTTTTTTGGGGTTTTTTTTTTTTTTTAATACTTTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAACTCGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCTCCCACCCCACC;SVTYPE=INV;CHR2=1;END=207579511;SVLEN=63541065	GT	./.	E1826813	contig1	size262	2	cov1.15	213	16	11.125	2	40.5	72	5	1.4	0	0	187	80	54.925	75	58.3333333333333	28	14	55.7142857142857	13	60	3	0	4	0
1	144038448	N	.	<INV>	6	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAATTTTACAATAAATTATGGTTCTATTGTACTAAAGCATTTATACAAACATTAGCTCCCTTAATCATCATAGTTGTAAATGGGACAAATCTTTTTTTTTTTTTTTTTTTTTGTGGTTTTTTTTTTTTTTAATACTTTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAACTCGTCATCTAGCATTAGGTATATCTC;SVTYPE=INV;CHR2=1;END=207579511;SVLEN=63541064	GT	./.	E2492959	contig2	size246	2	cov1.23	228	18	12.7222222222222	2	40.5	77	6	1.16666666666667	0	0	187	80	54.925	75	58.3333333333333	28	14	55.7142857142857	13	60	3	0	4	0
1	148850702	N	.	<TRA>	30	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCATTTCATCACATTTCATCATTTCATCATTTCACTTCATCTCATCATATCTTCTTTCATTGCATTATTTCATTTCATCTCATCATTTCATTTCATCATTTCACTTCATCTCATCATTTCATCACATCATTTCATTTCATCTCATCATTTCATTTCATTCTTTCATCATTTCATCTCAACATTTCATTTCATCATTTCACTTCATCTCATCATATCATCATTTCATCTCATGTTTTCCTCTCTTCTCATTACATCTTCTCATCTCATTTATTTATTTATTGTC;SVTYPE=TRA;CHR2=7;END=65118276;SVLEN=0	GT	./.	E2296937	contig1	size285	2	cov1.06	858	1	8	0	0	283	1	60	1	60	152	1	0	0	0	60	0	0	0	0	12	0	12	0
1	152797833	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATCTATGCACACATATATATGCACACACATATATGCACCCATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACA;SVTYPE=TRA;CHR2=11;END=24623806;SVLEN=0	GT	./.	E3075439	contig1	size407	3	cov1.11	145	0	0	0	0	43	0	0	0	0	230	90	28.0666666666667	47	48.7446808510638	52	12	32.6666666666667	7	48.7142857142857	19	1	4	0
1	152797885	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATCTATGCACACATATATATGCACACACATATATGCACCCATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACA;SVTYPE=TRA;CHR2=11;END=24623806;SVLEN=0	GT	./.	E3075439	contig1	size407	3	cov1.11	151	1	40	1	40	43	0	0	0	0	230	90	28.0666666666667	47	48.7446808510638	52	12	32.6666666666667	7	48.7142857142857	19	1	4	0
1	153492747	N	.	<TRA>	1	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTCATCTCTCCCCCCCTCTTTTCTTTCTCTCTCTCTCTCTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCCTCCTCTTTCCTTTCTTTCTCTTTTTCTTTCTTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTTCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCTTCTTCCTTCCTCTTTCTTTCCTTTCTCTTTTTTTTTCTTTTTTCTCTTTTTTCTTTTTTTTTTCTTTTTT;SVTYPE=TRA;CHR2=X;END=488245;SVLEN=0	GT	./.	E3440176	contig1	size274	2	cov1.10	194	0	0	0	0	68	0	0	0	0	241	11	4.72727272727273	0	0	113	3	3.66666666666667	0	0	4	0	3	0
1	153492776	N	.	<TRA>	1	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTCATCTCTCCCCCCCTCTTTTCTTTCTCTCTCTCTCTCTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCCTCCTCTTTCCTTTCTTTCTCTTTTTCTTTCTTCTCTCTCTTTCCTTCCTTATTCCTCATCTTCCTTCCTCTTTCCTTTCTTTCTCTTTTTCTTTCTTCTCTCTCTCTTTCCTTCCTTATTCCTCTTCTTCCTTCCTCTTTCTTTCCTTTCTCTTTTTTTTTCTTTTTTCTCTTTTTTCTTTTTTTTTTCTTTTTT;SVTYPE=TRA;CHR2=X;END=488245;SVLEN=0	GT	./.	E3440176	contig1	size274	2	cov1.10	210	1	60	1	60	74	0	0	0	0	241	11	4.72727272727273	0	0	113	3	3.66666666666667	0	0	4	0	3	0
1	159020405	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGATTTGATACTGATTAACTTCATTGGGAATGGGTTTCCTAATGTTATGGAAAATTGGCCACATTGATGAGTTCATTAGAGTTAAGTCCATCAGAGTTAAAGCCATCACTCACAGGTGGCCAATATCATCTTCCAGGTCAGATCACATTGCTGGTCTGTGGAGGCAGCCGTCCTGCCTCCACGGACCAGCAGTGCTCAATATGACCTGACCTGGGTAGAAAGGAGTAAAACTGAGATTCTTCTAAAATCTCATCTCTTTTGGGAGTCACTTCATGGCAGCTTTGCCTTTACCCTCTGCTTCCCCATACCTCTTGATAGGGGATATGCCTTTTCTTTATGGGTTAATTCTCATTAAAAAAGAAATATTCTTCCTTCCACTCTCATAAAACAATGAAGATAATAAAATTACTCCTTACATCTTTTT;SVTYPE=DEL;CHR2=1;END=159021041;SVLEN=-636	GT	./.	E635004	contig1	size425	8	cov2.84	150	11	57.9090909090909	11	57.9090909090909	32	0	0	0	0	104	11	55.1818181818182	11	55.1818181818182	38	0	0	0	0	770	186	719	211
1	169058929	N	.	<TRA>	16	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTATAAAATAATATAAATATATACTTATATTAATATATTATTATAAAATAATATAAATATATACTTATATTAATATATTATTATAAAATAATATAAATATATATTTATATTACTATATTATTATAAAATAATATAAATATATATTTATATTAATATATTATTATAAAATAATATAAATATATATTTATATTAATATATTATTATAAAATAATATAAATATATATTTATATTACTATATAATTATAAAATAAAATAAATAAAAATTATTTGTATGTTTATAT;SVTYPE=TRA;CHR2=17;END=68814448;SVLEN=0	GT	./.	E2365637	contig2	size281	2	cov1.07	86	66	43.030303030303	57	48.4912280701754	28	30	39.2666666666667	22	46.3636363636364	4	0	0	0	0	28	0	0	0	0	5	0	5	0
1	169058983	N	.	<TRA>	16	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTATAAAATAATATAAATATATACTTATATTAATATATTATTATAAAATAATATAAATATATACTTATATTAATATATTATTATAAAATAATATAAATATATATTTATATTACTATATTATTATAAAATAATATAAATATATATTTATATTAATATATTATTATAAAATAATATAAATATATATTTATATTAATATATTATTATAAAATAATATAAATATATATTTATATTACTATATAATTATAAAATAAAATAAATAAAAATTATTTGTATGTTTATAT;SVTYPE=TRA;CHR2=17;END=68814448;SVLEN=0	GT	./.	E2365637	contig2	size281	2	cov1.07	289	61	35.1147540983607	38	51.1842105263158	86	17	46.1764705882353	13	55.5384615384615	4	0	0	0	0	28	0	0	0	0	5	0	5	0
1	178390249	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGTATCTCATAAATACTATTATTATCACCATTTTATAGATGAGGAATCTGAAGTACAGAGAGGTTAAATAATCTTGCCCAGGGTCACACAGCTAATAAGTAGTAGAGCTAAGATTTGAACTCAGGTCTGCCTCTCATATTTGATACTCTTATTTATGTTTTACTTTTTTTTTCCAGTAAGTGACTTTTTTTCACTTATCTACCTA;SVTYPE=DEL;CHR2=1;END=178390697;SVLEN=-448	GT	./.	E863136	contig2	size205	5	cov3.68	164	13	57.8461538461538	13	57.8461538461538	51	1	60	1	60	156	17	60	17	60	38	1	59	1	59	804	240	875	240
1	182899674	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTACTCCAGCCTGGGTGACAGAATGAGACTCCATCTCAAAAAAGAAAAAAAAAATTTTATATATATATATATATATATATATATATATATATATATACACACACACTAAAAATACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATC;SVTYPE=TRA;CHR2=4;END=83762541;SVLEN=0	GT	./.	E39669	contig2	size189	2	cov1.60	57	0	0	0	0	23	0	0	0	0	74	0	0	0	0	12	0	0	0	0	11	1	3	0
1	182899726	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTACTCCAGCCTGGGTGACAGAATGAGACTCCATCTCAAAAAAGAAAAAAAAAATTTTATATATATATATATATATATATATATATATATATATATACACACACACTAAAAATACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATC;SVTYPE=TRA;CHR2=4;END=83762541;SVLEN=0	GT	./.	E39669	contig2	size189	2	cov1.60	63	0	0	0	0	28	1	60	1	60	74	0	0	0	0	12	0	0	0	0	11	1	3	0
1	193267778	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCAGAGACAGAGACAGGGAGAAAGAGAGAGACGGACAGAGAAAGACAGAGATGGACAGAGAGACAGAGAGAAACAGACAGAAAGAGAGAGAGACAGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGGGAGGGAGGGAGAGAGAGAGAGAGAGGGAAACAGACAGAAAGGGAGGGGGGCAGGGAGAGAGAGAGACACACACACAGACGGACAGGCAGAGGAGGAGAGTAAAACAAAAGATACACACAGAGAGGGAGAGACAGAGAGAGAGAGAGACAGAGACA;SVTYPE=TRA;CHR2=5;END=1206478;SVLEN=0	GT	./.	E1848082	contig1	size284	2	cov1.06	612	4	1.75	0	0	215	1	0	0	0	60	0	0	0	0	38	0	0	0	0	15	1	4	0
1	202311701	N	.	<TRA>	42	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACAAAGTAGGTAGGGTAGTGAATTCCTTCATCACTGGAAATGTTCAAGTGGAAGTTAGGTCATCACTTGTTAGGGATAGTGCAGAAAGGATCCTTGCACTGGGTGGCAGTTTGGAATAGATGACTTTTTTTTTTTTTTTTTTTGGGAAGGAGTCGTCGTCTGTCACCCAGGAGGGAAAGCAGCGGGGCGATCTCAGCTCACTGCAACATCTCCCTCCTGGGTTCAAGCGATTCTCCTGCCGCCGCCTTCTGTAGACCGGCGTCCCCAGCC;SVTYPE=TRA;CHR2=14;END=29595029;SVLEN=0	GT	./.	E1039341	contig1	size271	2	cov1.11	111	23	58	23	58	24	1	60	1	60	121	0	0	0	0	35	0	0	0	0	0	0	0	0
1	207937205	N	.	<TRA>	38.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACATTAGAGCCTACACAGTTTAGTTGGTACATTTCATTCTTTTAAGGTTCAAATAAGGGATTTTATTTTCCAGTGAGTTTCCTTGCATTGTTAACAAGTCAACAGCGTTAACGTATGATTTTTTGGTTTTTTTTTTTTTTTTTTACTTTTTATTTTTGGTCTACCCTTCTCATTTATTCCCTTTGTTACA;SVTYPE=TRA;CHR2=12;END=4166895;SVLEN=0	GT	./.	E313823	contig1	size191	2	cov1.58	133	12	54	11	58.9090909090909	37	1	60	1	60	133	0	0	0	0	39	0	0	0	0	0	1	1	0
1	207981233	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGGGAGGAGAGAGGAGGAAGGAGGGTAAGAGGGAGGGAGGGACTCGGGAGAAGAGGTGGAGGAGGAAGTTTCACAGTCTAGTGCATTCCCATCAGATCAGAGAGAGGAATTCATAGAGAAGTCTGACTGCCCTAAGGTTGTTTCCCCTTTTTCCATTTTTTGGAAAATATACACTTCTGCTTTTAACTGTTCCACATTCTGTACCTATCCTTAATACCTTGCTTGAAGAAAGTGTTCCACTGCA;SVTYPE=DEL;CHR2=1;END=208014818;SVLEN=-33585	GT	./.	E3008621	contig4	size245	6	cov3.70	117	10	58.7	10	58.7	35	0	0	0	0	53	12	59.1666666666667	12	59.1666666666667	35	0	0	0	0	7	0	7	0
1	209496915	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCGAGATCTACACTCTTTCCCTACGCGACGCTCTTCCGATCTAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTATTTCATATATATGTATGTGTATATATATGTGTGTGTGGTGTGTGTATATACAGAGAGGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATC;SVTYPE=TRA;CHR2=4;END=7900536;SVLEN=0	GT	./.	E1986945	contig1	size194	2	cov1.56	130	0	0	0	0	30	0	0	0	0	77	14	58.5714285714286	14	58.5714285714286	35	0	0	0	0	0	0	0	1
1	212301323	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCACCCCTGCCCTGCGCTTCCCGGCTCGGGTCCCCGCCCCCTGCCCCCAAATCCTTTTTTTTTTTTTTTTTTTTTTGTTCAGGTGGTCTCGCTCTGTCATCCAGGCTGGAGTGCAGTGGCGCGACCTCAACTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCTTTCCTCAGCCTCCCAAGTAGCATGAGCCACCACGCCCACCTAATTTTTGGCTTGTTTTTTTTTTTTTTTTTTTTGTTTTTGGTAGGGGCGGTCCTCGTGCCCTCGCGGCGTC;SVTYPE=TRA;CHR2=3;END=25855313;SVLEN=0	GT	./.	E3662122	contig1	size283	2	cov1.07	147	13	53.2307692307692	12	57.6666666666667	40	1	60	1	60	278	1	60	1	60	38	0	0	0	0	1	0	2	0
1	220075406	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATGTTTTTTCGTACCCTCTGTTCTTTAGAGAAGATGCAAGTACAGTAAATGGAAAGGGGGAAAAAAACTATTTTAAGGAATGGCTCCATCACTATAGAAAGAAATATGATGTTTCCTTTTTTTTTTTTTTTTTTTTGTCTTTTCCCTTCTTTTGGTCACAAGATGGTTATCATAGCTCTGTGCATGTAATCTGCATTCAAGTGAAAAAGAAGAGAGAAAGGGAAATAAGAGTTATATCTCTTCTTTTTGTGAAGAAAAAAAATGAAG;SVTYPE=TRA;CHR2=17;END=37631054;SVLEN=0	GT	./.	E553840	contig1	size268	2	cov1.13	163	9	57.1111111111111	9	57.1111111111111	37	1	60	1	60	115	6	40.3333333333333	4	57.75	49	1	60	1	60	0	0	0	1
1	224782795	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTGCAGCCACATGGGGCAGGCTCTGGAAAAGGAAGTTTATTACACTCACAGGTCCTGGAAGCAGGAGGTGTGGCACACAGGACCACAAGGGAAAGCACCAGTGTAGGTCAGGAGGCAGAAAGGGCCAGAGTGAGGGAAAATCTAGGCCACGGCCTTTACTGGGGTTTGCACAGGAAAGGTCAGGCGGAGCAGCATAAACAGTTTTGGATTGGGCAATTTGCATTATAAATGGCAGGCTTTGGGCTCTCTAGGGATGGTCTCTAGTTGCCTGGTACCTGGCTCTGGGAAGACTAAGGCAGAGGAATATTGCTTCTTGTAGTGTGCAGGTCCCATAGAAGAGATGTGACTAGATAGGCCAGCCCCTGCAAGGGCAGTCTCTCTCTATCCAGAAAGAGTTATAAGATAAACATCAAAATATACTGAAAATAAAAATATAAGCACACATTGTTTTACTGCACTTTGCTTTATTGTGCCTTGCAGATATTGTATTTTTTACAAATTGAAGGTTCATGAGAACCTTGTGTTGAGCAAGTCTGTCAGCACCATTTCTCCAACATCATGTGCTTGCCTCATGTCTCTGTGTCATATTTTGGTAATTCTCACAATATTTCAAATTTGCCCTGTTGTCAGGCCTATAGTAGAACTTCTTTTGGAGTTGCTTCTTATGGATGAGCAAAGAAAGTGGTTTCTTGAGATGAAATCTACTCCTGGTGAAGATGCTATGAATATCGTTGAACTGACAACAAAAGATTTACAATATTACATAAACTTGGTTAATAAAGTAGTGGCAGGGTATGAAAGAATTGACCCCAATTTTAAAAGAAGTTCTACTATAGGCAAAATGCTATCAAACAGCATTGCATGCTACAGAGAGATCTTTCACGAAAGGAAGAGTCAACTGAGGTGGCAAACTTCATTGTTGTCTTATTTTAGGAAATTGACACAGCCACCCCAACCTTCAGCAACCACCACGTTGATCAGTCAGCAGCCATCAACATGCAGGCAAGACCCTCCACCAGCAAAAAGATTAAGACTTGCTGAAGGCTCAGATGACTGTTAGCATTTTTTAGCAATAAAGTATTTTCAAATTAAGGTTTGTACATTATTATTTTAGACTGAATACTATTGCACATTGAATGGACCACAGTATAGTATAAACATAACTTATATGCCCTGGGAAACCAAAA;SVTYPE=DEL;CHR2=1;END=224786034;SVLEN=-3239	GT	./.	E1494957	contig2	size1188	96	cov12.20	220	66	44.2878787878788	55	50.5090909090909	53	0	0	0	0	160	65	39.5230769230769	46	52.7826086956522	52	0	0	0	0	57	0	48	0
1	243066888	N	.	<TRA>	47	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACAAAGCAAAATTACGACTAAAAAAAAAAAAAAAAAAAAAAACGGAACTCAATACAAAAAAATCAACTGAAAACAAAAGAAGGCAGTAATTTTAAAAACAGCAGGCAAGCCAGGTGCGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGATCAGGAGTTCAAGACCAGCTTGGCCAACATGGTGAGACCTCTGCCTCTATAAGAAAATACCAAAAAATTAGCCAAGCCTGGTGGCGCATGCCTGTAGTCCCAG;SVTYPE=TRA;CHR2=21;END=33264612;SVLEN=0	GT	./.	E475201	contig1	size281	2	cov1.07	139	14	54	13	56.3076923076923	36	0	0	0	0	95	0	0	0	0	34	0	0	0	0	1	0	0	0
10	7059511	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATTGAGCACCAACTGTGAACCTGCACACGCATGTATTTTGCTCCATTGGTTTATCCCCACTCAAGGGCAATACACATTCAAAGCATAAAAATTACATGACCTATGATATTTATTTTGCTAAGATTTTTCACAAAACCCCATCATCATCAGAGATAAGGTAACTCCTGGAGAGACATCACACTCTTTGCAGGTTTGGAATGCCCAGTTCCCATCCTTGCTC;SVTYPE=TRA;CHR2=19;END=17396811;SVLEN=0	GT	./.	E978440	contig2	size221	14	cov9.57	76	42	59.4047619047619	42	59.4047619047619	50	0	0	0	0	113	41	58.5121951219512	41	58.5121951219512	32	0	0	0	0	54	0	56	0
10	7634373	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACACTGCATTGCCTCCCAATAAAAGAAAAAGGAACAGAACAAAAAAGAATACAGCAACTAAAAACCACAATGAGATAACATCTCACGCCAGTCAGAATGGTGGTTATTCAAAAGTCAGGAAACAATAGATGCTGGAAATAAGACAGCGACAGAGAAGAACAGAGATAGAGGAGACAGAGACAGACAGACAGAATACTCAGAGAGGGACAGAGAGAAAGAGAGAAACAGAAAGAGTAGGGGAAAGAGGAAAATAGAGGGGAGGAGAAAGAGACAGAGAGG;SVTYPE=TRA;CHR2=18;END=9868617;SVLEN=0	GT	./.	E4382573	contig1	size280	11	cov5.93	80	19	60	19	60	25	0	0	0	0	86	14	50.8571428571429	12	58	51	0	0	0	0	43	0	40	0
10	10526100	N	.	<TRA>	24	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGCGAGCGGGAGAGGGAGAACGAGAGAGGGGGGCGGCGGGAGACACGGAGAGAGCAAGTGAGAGAGAGGAGGGGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAAAGAGAAAGAAAACGAGCGAGGGAGAGAGCGAGAGAGCGAGAGCGAGAGAGAGAGAGAGAGCGAAAGAGCGAAAGGGAGAGAGAGAGAGAGGAAGAGGGAAAAAAAAGGAGCAAAAAAAAAGCAAGGCAAAAGCCACAAGAAAAAACGAAGACGG;SVTYPE=TRA;CHR2=7;END=141431623;SVLEN=0	GT	./.	E2881762	contig1	size279	2	cov1.08	58	0	0	0	0	16	0	0	0	0	236	0	0	0	0	51	0	0	0	0	5	0	4	0
10	12157946	N	.	<TRA>	38	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTGTTGCCTAGGCTGGCATGCAGCGGCATAATCTTAGCTCACTGCAACCTTTGCCTACTGAGTTCAAGCAAGGCCTCAGCCTCCGACGTAGCTGGGACTATTAGGTGTGTGCCACCACACCCAGCAATTTTTTTTTTTTTTTTTTTGGGACAGGGTTTCACTCAGTCCTTCATGCTGGGGTTTGTTTGGTTGGATTCAACTCACTGCCATGTCCGGCTTCCGGGGTCAGGCCCTTCCCCTTCCGTAGGCTCCCAAGTTGCTGGGCCT;SVTYPE=TRA;CHR2=17;END=36503550;SVLEN=0	GT	./.	E3371806	contig1	size268	2	cov1.13	92	9	60	9	60	44	1	60	1	60	94	2	60	2	60	44	1	60	1	60	0	0	0	0
10	27111822	N	.	<TRA>	0.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTAGCCTCTCACTCACTCACTCTCTAAAAATACCCTAACATTTTTGGACTGCGGTTCGGTTCACTCGGTAACTGAAATCACAGAAAGTGAAACTGCAGATAAGGGGAGATTGTTACAGAGTATCAGTTGGGGAAGATGAAAAAATTCTTGAGATCTATAGTAGTGATGGTTGCTCATGTACATTGAGCAGCAAATGTACTTAATGCTACTGAACTGTACGCTTAAAAATGGTTAAAATGGTCATTTTTATGTTATATTTTACAACAATAAAAGACATACTTTT;SVTYPE=TRA;CHR2=13;END=78420555;SVLEN=0	GT	./.	E3640208	contig1	size283	3	cov1.60	94	12	4	0	0	55	2	7	0	0	272	1	0	0	0	97	2	0	0	0	5	0	4	0
10	30061913	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTCTCTCTCTCCTTCTGTCTGTTTCTCTGTCTCTCTGTCTGTCTCTCTCTCTCTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTTTCTCTCTCTCTGTCTCTGTCTCTCTCTCTTAGTTCGGAAGTGCACACGTCTGAACTCCAGCCACGTTCCGATCTCGTATGCCGTCTTCTGCTTGCTGTATGTCTTTCTCCCTCCATGTCTCTCTCTCTCTCTCACTCCCTCTCTCTCGG;SVTYPE=TRA;CHR2=8;END=9340968;SVLEN=0	GT	./.	E1006595	contig1	size270	2	cov1.12	295	18	7.44444444444444	2	60	85	5	0.2	0	0	173	0	0	0	0	62	1	0	0	0	3	0	4	0
10	33386463	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACTTTGTAAAATATTTAAAGAGATTTATTCTGAGCTAAATGTAAGGACCATGATCTGTGACACAACCTCAAGAGGTCCTGAGAACATGTGCCCAAGGTGGTTGGGTGACAGCCTGGTTTTATATGTTTTAGGGAGACATAAGATATCAATCAGTACATGTGAGGTACATATTGGTTTGGTCTGGAAAGGCAAGACAATGTGGAGCTGTGGGGGAGGTGGTGAGGAAAAGGGCTTCCAGGTCATAGGTAGATTTAAAGATTTTCTGATTAGCAATTGGTTTAAAGAGTTAAGTTATTATCTAAAGACTGGGAATCAATAGAAAAGAGTGTCTGGGTTAAGATAACGGGCTGTAGAAACCAAGGTTTTTATTATGTAGATGAAGTCTCGTAGGTTGCAGCCCTTAGATACAATAGATGGCAAATGCTTGCTATTCAGATCTTTAAAAGGGGGAGAATATAATGAGCCATGTCCAACAGCCCCCACTTCCGATCATGGTCTAAATTAGTTTTTCAGGTTTCTTTGGAATCATTTTTGCCAAAAGGGAGATCCATTTGGTTGGTTGGGGGGCTTAGAATTTTTTTGGTTTACATTCTTATATGTTTTAAAGGTTTTTTTCATCTTCTCTCTCATCTGGAGACCCCAGGGCTCCTCTCCAGGGTTCTTCCTCTGCATGGCCTTCTAGATCTCCTTGCTCTGAACTTAGAGTACTTATTGTCAATTGTTAAATTAACGACATTGTTTTTATTATCACCTTATCTTTTTATTTGTTGCAGATCTGTTTAAGCAGACTGTAGATGTATTGACATTAAAGAACTCAGTTTCCTCATATTCTCATGTAGCTTATCGAATGCCATGTGTATATAATGAGTACTCAAATATTTGTTAAAAGATTTATTTACTGCCTGTAAA;SVTYPE=DEL;CHR2=10;END=36119061;SVLEN=-2732598	GT	./.	E1557344	contig1	size911	43	cov7.13	98	20	51.85	19	53.1052631578947	43	0	0	0	0	60	7	55.2857142857143	7	55.2857142857143	31	0	0	0	0	7	0	14	0
10	33386464	N	.	<DEL>	55.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTAACAAATATTTGAGTACTCATTATATACACATGGCATTCGATAAGCTACATGAGAATATGAGGAAACTGAGTTCTTTAATGTCAATACATCTACAGTCTACTTAAACAGATCTGCAACAAATAAAAAGATAAGGTGATAATAAAAACAATGTCGTTAATTTAACAATTGAAAATAAGTACTCTAAGTTCAGAGCAAGGAGATCTAGAAGGCCATGCAGAGGAAGAACCCTGGAGAGGAGCCCTGGGGTCTCCAGATGAGAGAGAAGATGAAAAAAACCTTTAAAACATATAAGAATGTAAACCAAAAAAATGCTAAGCACCCCAACCAA;SVTYPE=DEL;CHR2=10;END=36119061;SVLEN=-2732597	GT	./.	E1557344	contig2	size333	3	cov1.36	98	20	51.85	19	53.1052631578947	44	0	0	0	0	60	7	55.2857142857143	7	55.2857142857143	31	0	0	0	0	7	0	14	0
10	38773332	N	.	<INV>	2	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAGGAATGGAATGGACTTAAATGGAATAGAATGGAATGGAAAGGAATGGACTCAAATGAAATGGAATAGAATGGACTTGAATGGAATGGAATGGACACGAGTGGAATGGAATGGAATGGACTCGAAAGAATGGAATGGAATTCAATTGAATAGAATGGAAAAGAACAGGAAGGAATGGAATGGAATGGACTCGAATGGAATGGAATGGACTCAAGTGGAATGGAATGGAATGGACTCAAATTGAATGGAATGGACTCGAATGGAACAGAATGGAATGGAATGGAATGGACACGAATGGAATGAAATGGAATGGACAAGAATGGAATGGAATGGAATGGAAAGGAATGGCA;SVTYPE=INV;CHR2=10;END=42812941;SVLEN=4039610	GT	./.	E3322294	contig2	size351	9	cov3.87	396	45	7.22222222222222	4	41.5	128	12	6.5	1	60	971	8	7.625	1	60	298	7	8.57142857142857	1	60	3	0	4	0
10	38774477	N	.	<DEL>	21	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGAATGGAATAGAATGGAATCGAATGGAATGGACATGAATGGAATGGAATGTCCTTGAACAGCATGAAATGAAATGGAATGGAATCGAATGGAATTTACTGGATTGGAGTCCAATGAAATGGACTCTAATGGAATGGGATGGACTCGAATGCTATAAAACGGAATCGGATGGACTCGAATGGAATGGAGTGGAATTGACATGAATGGAATAGAATGGAATACAATGTAATGGACTGGACTGGAATGGAA;SVTYPE=DEL;CHR2=10;END=38802095;SVLEN=-27618	GT	./.	E4430345	contig1	size250	2	cov1.21	714	43	4.76744186046512	2	50	240	16	4	0	0	179	9	1.22222222222222	0	0	74	2	4.5	0	0	24	2	27	2
10	38779847	N	.	<DUP>	43.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAATGCAATGGAATGGAAAGGGCTCGAATGGAATGGACTCCAAAGGACTGGCATCGAATGCAATGGAATCGAATGGAATGGAATCCAATGTAATAGGACGGATTGGAATGAACTCAGATGCAATTGACTGCAAAGGAAAGGTCTCGAATGGAATGTAACGGAATGCAACGTACTCGAATGGAATGGACTCGAATGGAAAGGAATGGATTGGAATGGAATCAAATGGAATCGGTTGGAATAGCATGGATTTGAACCAAATGGAAAGAAATGGAATAGAATGAAAT;SVTYPE=DUP;CHR2=10;END=39145025;SVLEN=365178	GT	./.	E2910704	contig1	size284	2	cov1.06	1676	81	2.1358024691358	0	0	556	15	4.06666666666667	1	30	550	85	1.69411764705882	0	0	214	28	1.10714285714286	0	0	13	1	21	0
10	38782059	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGGAATGGAATCAAACGGAATGGAATGGAAAGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATCAACTCGATTGCAATCGAATGGAATGGAATGGAATTAACCCGAATAGAATGGAATGGAATGGAATGGAATGCAATGGAATGGAATCATCCGGAATGGAATGGAATGGAATGGAATGGAATCCATTGCAAGGGACTGGAAGGGAATGGAATGGAATCGAATGGAATGGCATAGAATCGAAAAGAATGGAATGCAATAGAATGGAA;SVTYPE=INV;CHR2=10;END=39085101;SVLEN=303043	GT	./.	E3587814	contig5	size286	2	cov1.06	4712	9	3.11111111111111	0	0	1532	4	0	0	0	5245	1412	0.618980169971671	2	40.5	1764	455	0.795604395604396	3	43.3333333333333	7	0	7	0
10	38783765	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCCTTCAAGTCCGTTCCATTCCATTCCATTCAAATCCATTCCAATCCATTCCATTGTATTCCATTCGAATCCATTCCATTCCATTCCATAGCATTCCATTTCATTACTTTCTAGTCCATTCAATTGGATTTTATTCCACTCGAGTCCATTCCATTCCATTCTACACGAATCCATTCCATTCCATTCTATTCTGTTTTTTCGATTCCATTTCATTCCATTCCATTCCGTTATAGTCCATTCCATTCCATTCGAGTCCATTCCTTTCCAAATCATTCAAGT;SVTYPE=INV;CHR2=10;END=42802358;SVLEN=4018594	GT	./.	E4045774	contig1	size281	2	cov1.07	681	151	6.28476821192053	9	40.3333333333333	244	50	7.9	4	40.5	499	10	10.6	1	60	163	8	27.25	4	52	5	0	5	0
10	38796315	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGAATGGAATGGAATGGAATGGAATGGACTCGAATGCAATTAAATGTACTCGAATGAAATGGAATGGAATGCAGTGGAATGGACTCAAATGGAATAGAGTGAAATTTTCCGGTTTGTAAACTAATGGTATGGACTCTATTGGAATGGAATGGAATGGACTCGAATGGAAGAGAATAGAATAGAATGGATTCAAATGGAATAGAATGGAATGGACACGAAAGATACAGAATGGAATGGGATGGAATGGAATGGACTGGAAGGGAAGGGAATTGAGTGGAGTGGAAT;SVTYPE=DUP;CHR2=10;END=38873223;SVLEN=76908	GT	./.	E263684	contig3	size285	2	cov1.06	176	1	0	0	0	73	1	4	0	0	4005	17	13.5294117647059	4	48.75	1427	2	17	1	34	14	1	9	0
10	38799611	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAATGTAATAGAATGAAGGGGAGTAGAATGGCATGGAATGGAATGGACAAGAATGTAAAGGAATGGAATGGAATGGAATATAATGGAATAAAATGGAATGGACTCGAATGGAATGGAATTGAATGGAATGCACTCAAATGGAATGGAATTGATTTGAATGGAATGTACTCTAAAGGAATGGAATGGAATGGAATGGATTGCACATAAATGGACTGGAACGCAATTGAAACGGGCTCGAATGGAATGGAATTTATTACACACAGATGGATTGGAATGCAATTGAAATGGACTCGAATGGAATGGACTCAAATGGAATGGAATGGAGTTGAACGGACTAGAAACGAATGGAATGGAATGGAATGGAATTGA;SVTYPE=DEL;CHR2=10;END=39126809;SVLEN=-327198	GT	./.	E298729	contig1	size369	4	cov1.64	111	31	4.67741935483871	1	49	53	14	4.64285714285714	0	0	1998	24	0.458333333333333	0	0	614	11	0.727272727272727	0	0	4	0	4	0
10	38799669	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAATGTAATAGAATGAAGGGGAGTAGAATGGCATGGAATGGAATGGACAAGAATGTAAAGGAATGGAATGGAATGGAATATAATGGAATAAAATGGAATGGACTCGAATGGAATGGAATTGAATGGAATGCACTCAAATGGAATGGAATTGATTTGAATGGAATGTACTCTAAAGGAATGGAATGGAATGGAATGGATTGCACATAAATGGACTGGAACGCAATTGAAACGGGCTCGAATGGAATGGAATTTATTACACACAGATGGATTGGAATGCAATTGAAATGGACTCGAATGGAATGGACTCAAATGGAATGGAATGGAGTTGAACGGACTAGAAACGAATGGAATGGAATGGAATGGAATTGA;SVTYPE=DEL;CHR2=10;END=39126848;SVLEN=-327179	GT	./.	E298729	contig1	size369	4	cov1.64	390	1	0	0	0	168	0	0	0	0	1664	106	3.47169811320755	3	39	501	29	2.72413793103448	1	39	4	0	4	0
10	38800337	N	.	<INV>	18.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTCCATTCCATTCCATTCCATTCCGTTCCATTCCTTTCCCTTCCCTTCCGTCCGATTCCATTCCCTTCCATTCCATTCCATTCCATTCCATTGCAATCGAGTTGATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCGATTCCATTCCATTCCGTTCCATTGGAGTCCATTCCATTCCATTCCATTCCATTCCATTCGTGTCCATTCTGTACCATTATATTCCGATCTATTCAAATCCATTCAATTCCATTGCATTCCATTCGAATCCATTCCTC;SVTYPE=INV;CHR2=10;END=42356143;SVLEN=3555805	GT	./.	E3872720	contig1	size284	2	cov1.06	744	39	1.61538461538462	0	0	256	10	0	0	0	31585	964	5.19813278008299	61	38.5737704918033	10106	361	4.3601108033241	15	39.2666666666667	14	1	3	0
10	38808674	N	.	<DEL>	7	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGAATGGAATTGAATGGAAAGTACTAGAATGGAATGGAATGGAATCGAAAAGAATAGAATGGAGTGGAATGGAACGGAATGGAGTGGAATGCAATAAACACCCGGGGAATGAAGTGGATTGGAATGAAATGGAATGGAAAGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGGATGGAATGGAATGGAATGGAGTGGAATGGAGTGGAATGGAATGGAGTGGAAAGGAATGGAAGAGAATGGAAAGGGAA;SVTYPE=DEL;CHR2=10;END=39146568;SVLEN=-337894	GT	./.	E121245	contig3	size286	2	cov1.06	639	17	1.35294117647059	0	0	222	8	2.375	0	0	1139	29	3.62068965517241	2	40	432	2	3.5	0	0	4	0	4	0
10	38808862	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGGAGTGGAGTGGAGTGGAATTGAATCAAATGGACTGAAAAGGAAAGGAATGGATTGGAATGCGGTGGAGTGGAATGAACTTGAATGGAATGTACTGGAACGGAATAGACTCGAAGGGAATGGACTCGAATCAAATGGAATCAAATGGAAAGCAATGGAATGGAATGGACTTGAATGGATTGGACAGGAATGGAATGGACTGGAATGGAATGGAATCGAATGGAATAGAATGAGATCGGAAGGGCACACGTCTGAACGACAGTAACGGACAGAA;SVTYPE=INV;CHR2=10;END=39109498;SVLEN=300637	GT	./.	E4074295	contig1	size275	2	cov1.10	3783	38	3.57894736842105	1	40	1251	16	1	0	0	1270	71	3.73239436619718	2	35	476	22	12.4545454545455	3	60	3	0	3	0
10	38810831	N	.	<INV>	3	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCATTCACTCCATTCCATTGCATTCCATTCCCTTCCTTCCGCGACCGTTCCATTCTATTCCATTCCATTAAATTCCATTCAATTCCACTCCATTACAGTCCATTTCATTCCACTCCATTCCATTAGAGTCCGTTACATTCTATTCCACTCGAGTCCATTCTATTCCAAAACAATGAAGTCCATTCCATTCCATGCATTTCCATTCCATTCCATTCGAGTACATTCAATTCCATCCCTTTC;SVTYPE=INV;CHR2=10;END=42376360;SVLEN=3565528	GT	./.	E4266597	contig1	size241	2	cov1.25	817	21	5.23809523809524	1	50	328	7	5.57142857142857	0	0	7352	58	3.51724137931034	2	34	2526	18	5.27777777777778	1	40	4	0	4	0
10	38813662	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTCCATTCCATTCCATTCCACTCGCGTTGATTCGATTCCATTTAATTCCTTTTCACTCCATCCCATTTCATTCCATTCCATTCCATTCCACTGGGGTTGATTAGATTCCATGGAATTCCATTTCACTCCATTCCATTCCATTCCATTCGATTGCAATCGAGTTGAATCCATTCCATTCCATTCCACTCCCTGCCGACCCCATCCATGACGGGTGAGTCCATGCCGTTGCGTCCCATGCCATTCCGATCTACTCGGGTTGATTCCATTCCATTCCATTCCAA;SVTYPE=INV;CHR2=10;END=42358122;SVLEN=3544459	GT	./.	E895937	contig3	size284	2	cov1.06	998	17	6.05882352941176	1	60	384	3	0	0	0	3865	5	15	1	60	1148	1	0	0	0	8	0	5	0
10	38813872	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCGGAATGGAATGGACTCGAATGGAATGGACTGAAATGGAACAGATTCAAAGGGAATGGAATTGAATGGAAGGGACTCGAATGGAATAAAATGGAATGGAATGGAATGGACACGAATAGAATGGACTGAAATGGAATGGAATCAATTGGAAGGACTCGGATGGGATGTAATCGAACGGAAAGGAAACAA;SVTYPE=DUP;CHR2=10;END=39118092;SVLEN=304220	GT	./.	E2601798	contig1	size189	2	cov1.60	991	32	2.75	0	0	357	5	1.6	0	0	44709	32	7.125	1	60	19865	10	2.5	0	0	14	0	13	0
10	38814121	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATGGAAAGATATCCAATGGAATGGAATGGACTCAAAGGGAATGGACTGGAATGAAACGGACTCGAATGGAATGGACTGGAGTGGAATGGATTTGAATGGAATGGAAACTAATGGAATGGAATGGAATGGAATGGAAAGAATAGAATTGAATGGAATCGGATGGAACGGAATGGTATGGAATGGAGTTGACTGGAATAGATTCGAATGGAATGTTATTGAATGGAATGGAATGCACTCAAATGGAATGGAAACAAAT;SVTYPE=DUP;CHR2=10;END=39130456;SVLEN=316335	GT	./.	E3963445	contig1	size257	2	cov1.18	521	19	1.68421052631579	0	0	208	9	2.55555555555556	0	0	2792	24	2.375	0	0	1030	10	4.8	1	39	5	0	4	0
10	38814124	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCAATGGACTCGAAAGTAATAGACTTGAAAGGAATGGAATCAAATGGAATGGAATCGAATGGAATGCAATAGTATGGAAGAGAATCGAATGTAATAGAATCAAATGGAATGGACTGGAATGGAATGGCCTCGAATAGAATGGAATGCAATTGAATGGACTCTAATGGAATGGAATCAAATGGGATGGAAGTGAAGGGAATTGAATCGCAGGGAACGGAAAGGAATT;SVTYPE=DUP;CHR2=10;END=39141033;SVLEN=326909	GT	./.	E3761088	contig2	size226	2	cov1.34	865	63	0.587301587301587	0	0	330	24	0.75	0	0	3317	139	9.9568345323741	10	43.7	1132	40	10.85	3	37.6666666666667	9	0	3	0
10	38816984	N	.	<INV>	12	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCATCTCGTGCCATTCCATTATATTCGATTCCATTCCATTCCATTCCATTGCAGTCTATTTCATTCCATTCCATTCGAGTACATTCCATTCCATTCCATGCCATGACATTCCATTCGATTTCATTCTATTCCATTGCATTCATTTCAATTCCGTTTCATTCCGTTACATTGAATTCGAATCCATTGCATTCCATTCCATTCCATTCCATTCGTTTCCGTCCCATTCCATTCCAATCCGTTCGATTCCAATCCATTTGAGACCTTTCCATTCCATTTCATTCCCTTCGTGTCCATTTGATTCGATTTCATTCCATTATATTCTATT;SVTYPE=INV;CHR2=10;END=39079424;SVLEN=262439	GT	./.	E579660	contig2	size327	7	cov3.23	1073	27	5.96296296296296	2	44.5	567	6	5.66666666666667	0	0	11988	13	1.76923076923077	0	0	4495	5	8	1	35	15	1	11	0
10	38817048	N	.	<INV>	12	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCATTCGATTTCATTCTATTCCATTGCATTCATTTCAATTCCGTTTCATTCCGTTACATTGAATTCGAATCCATTGCATTCCATTCCATTCCATTCCATTCGTTTCCGTCCCATTCCATTCCAATCCGTTCGATTCCAATCCATTTGAGCCCTTTCCATTCCATTTCATTCCCTTCGTGTCCATTTGATTCGATTTCATTCCATTATATTCTATTCCATTCGATTCCATTCCATTCCAGTCTATTACATTCAAG;SVTYPE=INV;CHR2=10;END=39079424;SVLEN=262375	GT	./.	E2884760	contig2	size255	2	cov1.18	1524	29	5.79310344827586	2	60	677	12	1.58333333333333	0	0	11988	13	1.76923076923077	0	0	4495	5	8	1	35	14	1	11	0
10	38818187	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGATTCGAATTTAATGCAATGGAATGTAATGGAATGGAACGGACACAAACGGTATGGAATGGAATGGAACGGACTCGAAAGCAATGTAATGGAATGTAATGGACTAGAAAGGAATTGAAAGGAATGGAATGGAATTGACTGGAATGGATTGGAATCGAATGGAAGGGAATGGAATGGACTCCAATGGAATGGAATGTTCTTGGAGGGAATGGAATGGAATGAAAACGACTCGAGTGGAA;SVTYPE=INV;CHR2=10;END=42804581;SVLEN=3986395	GT	./.	E3447687	contig2	size240	2	cov1.26	1285	31	5.03225806451613	2	57.5	667	10	4.6	0	0	3418	4	0	0	0	1083	2	1.5	0	0	8	0	16	0
10	38869150	N	.	<DEL>	23	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGAAAGGAATGGAATGGACTCTAATGACGTGGAATAGAATGGAATCAAATGGAATGGAATGGAATCTAGTTGAATTTAATGGAGTAGAATGGACTTGATTGGAATGGAGTGGAATGGAGGGGAAAGGGGTTCAATGGAATGGAAGGGAATTGAATGGATTCGAGTGGAACAGAATGTAGTGGTTTGGAATGGACTAAATGGAGTCGAAACAAATGGAATGGAATGGAATGAAACGGACTCAAAAGGAATGGAA;SVTYPE=DEL;CHR2=10;END=38874808;SVLEN=-5658	GT	./.	E2461359	contig2	size254	3	cov1.78	1425	89	7.39325842696629	3	34	479	39	4.69230769230769	1	36	1750	109	11.1743119266055	2	38	521	34	13	3	41.6666666666667	18	0	13	0
10	38870439	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATCAACTCGATTGGAATGGAATGGAATTAACCCGAATAGAATGGAATGTAATGGAATGGAACGGAACGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGACCCGACTGGAGGGGAAGGGAATGGAATGGAATGGAATTGTGTGGAATGGAATGGAATGCAATGGAGCGTAAAGGAATTGAATAGAATCCACCCGAATGGAAAAGAATGGTATAGAACGTAAAGGAATGGAATGGAATGGAATGGAATGGAATCAACTCGAGTGGAATGGA;SVTYPE=INV;CHR2=10;END=42365979;SVLEN=3495539	GT	./.	E413247	contig2	size286	2	cov1.06	570	14	5.21428571428571	1	60	204	10	1.1	0	0	14382	310	4.84516129032258	11	41.3636363636364	4637	124	4.5	5	35.8	14	1	3	0
10	38870960	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTATTTAATTAGAGTCCAATCCATTCATTTCCATTCCATTCGAGTCCAATCCATTCCATTTGAGTCCATTCCATTCCACTCCATTCTATTCGAGTCCATTCCACTCCATTCCTTTCCATTTCCGTCCATTCCATTCCAATCTATTCCTTTCGGTTCCATTCCATTCAATTCCATTTTATTCCATTCCATTCCATTCGTGTCCATTC;SVTYPE=INV;CHR2=10;END=42801971;SVLEN=3931010	GT	./.	E3483017	contig1	size207	2	cov1.46	1959	2	0	0	0	600	0	0	0	0	1175	44	5.59090909090909	0	0	347	15	6.8	0	0	13	0	10	0
10	38871208	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCGTTCCATTCCATTCCATTACATTCGGATTGATTCTATTCAATTCCCTTACACTCCATTACATTCCATTCCATTCGGGTAGTTTCCATTCCATTCCATTCCATTCCTCTCCATTCCATTGCACTCGAGTTGATTCCATTCCATTGCATTCCATTCCATTCCATCCAATCCCTTCCGGTCCCTTCCCATCCAATACATTCCAATTCACACGATTCCATTCCAATTCACTCCAATACATTCCAATCCATTTGATTCGTTTCGATTCCATTCCATTCGCTCC;SVTYPE=INV;CHR2=10;END=42366392;SVLEN=3495183	GT	./.	E554869	contig8	size282	2	cov1.07	783	5	0.4	0	0	259	0	0	0	0	42157	1724	1.63399071925754	20	40.3	13483	545	1.48256880733945	7	41.2857142857143	13	1	3	0
10	38879347	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATGGAGTCCACATTGAATGAAAATGAAAGGAGTCATAATCTAATGGAATCGAAGGGAATCATCATCAAATGGAATCGGATGGAATCATTGAACAGAATTGAATGGAATCGTCATCGAATGAATTGAATGCAATCATCGAATGGTCTCGAATGGAATCATCTTCAAATGGAAAGGAATGGAATCATCCCAGAGAATGGAATAGAGTCATCATTGAATGGAGTCAAACGGAATCATCGAATGGACTCAAATGGAAGCATCATGGAATGGAAGCAGAA;SVTYPE=DUP;CHR2=10;END=42387252;SVLEN=3507905	GT	./.	E1690525	contig1	size276	2	cov1.09	912	0	0	0	0	337	2	3	0	0	182914	577	12.5944540727903	116	36.698275862069	57332	153	13.1176470588235	32	35.46875	20	1	5	0
10	39078345	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTATTCAATTCCATTCCCTTACATTGCATTATATTTGATCCCATTCCATTCGACTCTAGTACTTTCAACTCCATTCCATTCCATTCCGTTCCATCCAATTCCATTTCATTCTATTCGTTTCCCTCCGATTCCATTCCATTCCATTCCTTTCCATTCTACTCGGTTTGATTCCATTTCGTTCCATTCCATTCCATTCCATTCCATTCCATTGCATTCCATTGCATTCCATTCCACTTGGGTTGTTTCCTTTCCATTCCATTCCTTTAGTTTCCATTCCATTCATT;SVTYPE=DEL;CHR2=10;END=42369794;SVLEN=-3291449	GT	./.	E4256702	contig9	size284	2	cov1.06	1277	0	0	0	0	582	1	60	1	60	5823	17	4.17647058823529	1	37	1929	11	18.2727272727273	4	43.25	5	0	5	0
10	39080689	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATCAATGGGATGGAAGGGAATGGAATTGAAAGGTATGGAATTGCAAAGAAAGGAATCCCCCCGAGTGCAGGGGAATGGAATGGAATAGAATGCAATGGAATGGAATCATACGGAATGGAATGGAATGGAATTGAATGGAATGGAATGGAATGGAATGCAATTAACCCGAATAGAATGGAATTGAATGGAATGGAAAGGAATGGAATGGAATAGAATGGAAAGGAATCACCCCAAGTGCAGGGGAATGTAATGGAATGGAATGCAGTGGAATGGACTCATC;SVTYPE=DUP;CHR2=10;END=39100511;SVLEN=19822	GT	./.	E1574545	contig1	size281	2	cov1.07	1764	1	2	0	0	579	2	1.5	0	0	1204	19	1.63157894736842	0	0	448	5	1	0	0	5	0	9	0
10	39081297	N	.	<DUP>	15	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTCCATTTCATTACATTCCATTTGAATATATTCCATTCAAATAAATTACATTGCAATCCATTACATTCCATTCAGTCCTATTCCAGTCTATTCCATTCCAGTCCACTCCATTCGATTCCATTCCATTCGATTCCATTCCAGTCTATTCCACTTCGATCCATTCCAATCCATT;SVTYPE=DUP;CHR2=10;END=39089671;SVLEN=8374	GT	./.	E2204847	contig1	size174	3	cov2.60	802	76	5.18421052631579	3	47.3333333333333	401	18	1.72222222222222	0	0	344	47	13.2127659574468	1	60	146	11	12.5454545454545	0	0	22	1	14	1
10	39081392	N	.	<DUP>	15	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTCCATTTCATTACATTCCATTTGAATATATTCCATTCAAATAAATTACATTGCAATCCATTACATTCCATTCAGTCCTATTCCAGTCTATTCCATTCCAGTCCACTCCATTCGATTCCATTCCATTCGATTCCATTCCAGTCTATTCCACTTCGATCCATTCCAATCCATT;SVTYPE=DUP;CHR2=10;END=39089671;SVLEN=8279	GT	./.	E2204847	contig1	size174	3	cov2.60	1551	61	5.54098360655738	2	52.5	605	23	5.43478260869565	0	0	344	47	13.2127659574468	1	60	146	11	12.5454545454545	0	0	23	1	16	1
10	39084428	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTGAGTCTACTACCTTCCATTCCCTCCCACTCCCCTCCATTCCATTCCATTCACTTCAGGAAGATTCCATTCCATTGCATTCCACTCCCTTCCATTTCCCTGCCCTCGCGTTGATTCCATTCCATGACATTCCATTCCATTCCATTCCATTACATTCGGATTGATTCTAATCAATTCCCTTGCACTCCATTACATTCCATTCAATTCGGGTAGTTTCCATTCCATTCCATTCCATTCCTCTCCATTCCATTGCACTCGGTTTGTTTACATTCCATTGCATTCCGTT;SVTYPE=DUP;CHR2=10;END=42816211;SVLEN=3731783	GT	./.	E2783822	contig1	size286	2	cov1.06	288	13	5.15384615384615	1	60	104	4	14	1	40	996	55	2.12727272727273	0	0	355	17	6.70588235294118	1	60	3	0	6	0
10	39085562	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCGCCTGTCCTTTCCCTTCCACTCCATTCCATTCCTTTCCGGTGCAGTCCTTTCCATTCCCTTCCATTCCATTTCATTCCATTCCATTCCATTCCTTTCCATTCCATTTCGTTCCACCAGGATGGAATCCATTCCATTCCATTTCATTCCATTCCATTTCATTCCATTCCATTCGATTGGATTCCGTTCCATTCCATTCCATTCCGTTCCATTCCGTTCCGTTTAATTCCATTCCATTCCATTCTATTCGGGTTAATTCCATTCCATTCCATTCGATTGCAAT;SVTYPE=DUP;CHR2=10;END=42374442;SVLEN=3288880	GT	./.	E863208	contig2	size284	2	cov1.06	1440	9	4	1	31	573	2	32	1	60	8344	52	3.57692307692308	0	0	3011	16	1.3125	0	0	13	1	9	0
10	39090276	N	.	<INV>	1	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTCAAGTCCATCACATTCGTGTCCATTCCATTCCATTCCAATCCATTCGATGCCATTCCATTGGATTCTATTCCTTTCGACTCCATTCCATTCCATTCCTTTCCAACCATTTCCATTCACTTCCATCCGTTTCAATTCCATTCTGTTCCTTTCCATTCCATTCCAGTCAATACCATTCCTTTGGGTTCCATTCCATTCGATGAAATTCCCTTCTATTCCATTCCATTCCATTCGATGCCATTCCATTCAAATCCATTCC;SVTYPE=INV;CHR2=10;END=39139697;SVLEN=49422	GT	./.	E1374406	contig1	size260	3	cov1.74	739	39	7.69230769230769	5	43.8	255	14	17.4285714285714	5	42.8	2080	8	7.75	1	60	849	4	0	0	0	20	1	27	0
10	39090454	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCAGTTCATTCCATTCCATTACATTGCATTCCATTCCATTCCAATCGGGTTGATTTCATTCCATTCCATTCCATTCTAATCCATTCCATTCCGTCCCAATCCCTTCCATTCCATTCCATTCCATTCCCTTCCCTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCGATACCTTTCCATTACGCTCCATTCCATTCTCTTCTTTTCGATTCCATTCAATTCCGTTCCATTCGATTCCATTCATTTCAACTCCATTCCATTCGAGTGCATTCCATTCCATA;SVTYPE=DUP;CHR2=10;END=42379478;SVLEN=3289024	GT	./.	E1270920	contig1	size286	2	cov1.06	269	1	0	0	0	140	2	0	0	0	7531	47	7.1063829787234	6	35	2508	23	11.5217391304348	4	47.5	6	0	3	0
10	39092911	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCATTCCACTTTTGTTGATTCCATTCCATTCCATTCCATTCCATTCCTTTGCTTTCCCTTTCACACGGGTTGATTCCATTCCATTCCATTCCATTCCATTGCATTGCATTCCATTCCTTTCCATTCTAGTTGATTCCATTCCATTCCATTCCAATGAAATCGAGTTGATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCTATTCGGGTTAATTCCATTCCATTCCATTCCATTCCATTCCCTAGTTTTCCTTTCCATTCGTTTCCATTCCT;SVTYPE=DEL;CHR2=10;END=42366242;SVLEN=-3273331	GT	./.	E555980	contig15	size285	2	cov1.06	8585	25	0.2	0	0	3449	4	0	0	0	845	34	0.176470588235294	0	0	291	5	8.4	1	40	14	1	6	0
10	39095501	N	.	<DEL>	1	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCATTCCATTCCATTTCTTTATGTTCTATTCCATTCCGTTCGATTCCATTTTATTCCAGTCCATTCCATTCGAGTCCATTGCATTCCAGTGCAATTCATTTGATTCCACTCCATTCGATTCTATTCCACTCAATTCCCCTCCGTTCCATTCCTTTGCGTTCCTTTCTATTCCATTCCATTGCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTTCAT;SVTYPE=DEL;CHR2=10;END=42375499;SVLEN=-3279998	GT	./.	E2250969	contig1	size230	3	cov1.97	190	6	8	1	37	93	4	19.5	1	60	10142	517	5.89555125725339	40	44.15	3358	195	6.1025641025641	16	44.0625	3	0	5	0
10	39113541	N	.	<DUP>	4	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTCCATTCTCTTCCATTTCATTCGAGTTGCTTCCTTTCGAGTTGCTTCCCTTCCCTTCCTTTCCCTTCCATCCCCTTGCACTCCGCTTCCTTCCTTTCCATTCCATTCCATTTCATTCCATTCCATTCCATTCCATTTCATTCCATTCCATTCCATTCGTGTCCATTCCACTGCAGTCCATTCCATTCGTGTCCATTCCATTCCAGTCCATTCGATTTGTGTCCACTGCATTCAATTCCACTCCATTCCATATTATTCCATTACACTCCATTCCATTC;SVTYPE=DUP;CHR2=10;END=42357296;SVLEN=3243755	GT	./.	E1062554	contig11	size279	2	cov1.08	351	24	0.0416666666666667	0	0	166	15	5.33333333333333	1	60	10183	301	5.00332225913621	18	37.0555555555556	3376	117	4.26495726495726	6	44.5	4	0	3	0
10	39117944	N	.	<INV>	14	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGAATGGAATGGAATGGAATGAAATGAACTCGAATGGAATGGAATGCAATGGACCTTAAAGGAATGGAATGGAATGGAATGGAAAGGAGTCAAATGGAATTGAATATAATGGACTGGAGTGGAATGGAATGGAATGGAATGGACTCGAATGCAATTAAATGTACTCGAATGAAATGGAATGGAATGCAGTGGAATGGACTCAAATGGAATAGAGTGAAATTTTCCGGTTTGTAATCTAATGGTATGGACTCTATTGGAATGGAATGGAATG;SVTYPE=INV;CHR2=10;END=42814384;SVLEN=3696439	GT	./.	E2393428	contig1	size271	2	cov1.11	686	51	0.843137254901961	0	0	228	7	1.42857142857143	0	0	440	34	1.73529411764706	0	0	158	8	2.375	0	0	3	0	7	0
10	39145031	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGTTCCATTCCAGTCCATTCCATTCCATTCCATGACCTTCCATTGGATATCTTTCCATTACACTCCATTCCATTCTATTCCTTTCAATTCCAATCAATTCCATTCCATTTGATTCTATTCCAATCGATTCCCTTCCATTCGTTTCCATTCAATGATTCCATTTGATTCCTTTTGATGATTATTCCAT;SVTYPE=DEL;CHR2=10;END=42597520;SVLEN=-3452489	GT	./.	E1599744	contig2	size187	3	cov2.42	1328	43	0	0	0	460	11	0.181818181818182	0	0	220385	384	28.4166666666667	247	39.4574898785425	68186	100	30.98	72	39.5833333333333	3	0	3	0
10	39148962	N	.	<INV>	1	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTAGAATGCAATGGAATGCAATGCAATCTTATTGAATGGAATGGAATCCAATGTAATGGAATGGAATGTACTGGAATTGAATGGACTCCAGTGGAATAGAATCAAATGGAATGGAATGGAATGGAATGGAATGGAATCGAATTGAATGAAACGGATTCAAAAGGAATGGATTGGATCGGAACGAAATGGAATGGAATGGAACGGACTCGAATGTAATCGAATGGATTGCAATGGACTCAAATGCAATGGAGTCGAAAAATATGGAATTGAAAGGAATGCAATCAAACCAAATGTAACCCTTTGGAATGGAATGGAATGGACTAGAATGGACTGGAAAGC;SVTYPE=INV;CHR2=10;END=42801721;SVLEN=3652758	GT	./.	E1473105	contig1	size339	3	cov1.34	1606	7	33.2857142857143	4	55.75	482	3	0	0	0	1518	38	3.73684210526316	2	50	526	9	5.88888888888889	1	40	6	0	4	0
10	42363431	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCATTCCACTCGGTTTGATTACATTCCGTTGAATTCCATTCCATTCCTTTCGAGTTGATTCCATTACATTACATTACATTACATTACATTACATTACATTACATTACATTACATTCCACTCGGTTTAATTTCATTCTGTTGAATTCCATTCCATTCCTTTCCAGTTGATTCCATTCC;SVTYPE=DUP;CHR2=10;END=42797578;SVLEN=434147	GT	./.	E133323	contig1	size179	2	cov1.69	48263	380	4.97105263157895	19	37.6842105263158	15500	105	3.00952380952381	2	32	320	8	0.5	0	0	146	1	0	0	0	13	0	17	0
10	42368071	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATTCATGTCCATTCCATTCCATTCCATTCATTTCCATTCGAGTCCATTCTTTTCCATTCCATTAGGGTACATTCCAATTTATTCCAATTGAGTCAATTCCATTCTATTCAATTTGAGTCCAATCCATTCCACTGCGTTTGAATCCATTCCATTCCATTCCATTCTATTCCAATCCATTCCATTACATTCAATTCAATTCCTTGTCAATTCTAT;SVTYPE=DEL;CHR2=10;END=42808129;SVLEN=-440058	GT	./.	E1968957	contig2	size214	2	cov1.41	4380	76	1.30263157894737	2	35	1669	28	3.10714285714286	0	0	595	11	5.63636363636364	1	60	249	7	10.7142857142857	1	60	6	0	8	0
10	42375150	N	.	<TRA>	1	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCATTGCATTCCATTCCATTCCTTTCTGTTCCATTCAATTCCATTCCATTCCATTCTATTCGTGTTAATTCCATTCCATTCTATTCCATTCCATTCCATTGAAATCGAGTTGATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCTTTCCATCCCATTCCATTCCTTTCCCTCCCCTCCCATCCCCTCCCCTCCCATTCCATCCCATCCCATCCCCCTCCCTCCCCTCC;SVTYPE=TRA;CHR2=5;END=68317837;SVLEN=0	GT	./.	E1986233	contig8	size262	2	cov1.15	6421	29	0.275862068965517	0	0	2275	6	0	0	0	40	1	60	1	60	16	1	60	1	60	15	0	3	0
10	42859703	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAAAATTATCCAGGTGTGGTGTTGTATGCCTGTAATCCCAGCTATTCGGGAGGCCGAGGCAGGAGAATCGCTTGATCCCAGGAGGTGGAGGTTACAGTGAGCAGATGTCTTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTACATCTAAAAAATAACATAATAAAATAAAATAAAAACATTATAAGGGGCTTATATCTTATAATTCATCAAGAAAAGCCAAAGTATCTATCCCTTTCAGAAAATAAACATGTAATTTAATTATGTTCATAACAAATCATTTAGTAAACAATTAATCATATGTGAACACTTCCAGGAGGCGCAAAGTCCCAGCTCCTAAAACTTAACATTACCCTCAAACACCCAGATGGCAGCATATGGAATAGAGTTATTCACTTTCACAAGTTCTCTCTTTTGAAAAAAAGAATA;SVTYPE=DUP;CHR2=10;END=82577187;SVLEN=39717484	GT	./.	E3442435	contig4	size434	5	cov1.74	1900	29	37.0689655172414	15	48	546	10	42.9	9	46.6666666666667	79	63	2.68253968253968	0	0	34	19	3.63157894736842	0	0	11	1	11	1
10	60477224	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAACTTCCAATACTATGTTGAATAGGAGTGGTGAGAGAGGACATTCTTGTCTTGTGCTGGTTTGCAAAGGGAATCCTTCCAGGTTTGCCCATTCAGTATGATATTGGCTGTGCGTTCTCATTAATAGCTCTTATTATTTTGAGATATGTTCCATCAATACCTAGTTTATTGAATGTTATTAGCATGAAGGGTTGTTGAATTTTATTGAAGGCTTTTCCTGCATCTAATGAGATAATTATGTGGTTTTCATCATTGGTTCTGTTTATGTGATGGATTACATTCATTGATTTGCATATGTTGAACCAGCCTTGCATCCCGGGGATGAAGCCGACTTGATCATGGTGAATAAGATTTTTAATGTGCTGCTGGATTCAGTTTGCCAGTATTTTATTGAGGATTTTCGCATTGATGTTCATCAGGGATATTGGCCTGAAATTTTCTTTTTTTTTTTTAATCTCTGCCAGGTTTTGGTATCAGGATGATGCTGGTCTCATAAAATGAGTTAGAGAGGAGTCACTCTTTTTCTATTGTTGGGAATAGTTTCATAAGGAATGGTACCACTTCCTCTTTGTACCTCTGGTAGAATTTAGCTGTGAATCCATCTGGTTCTGTGAATCCATCAGGTGGGGTGGCCAGTCCGGGGACCACGTCGGCCCAGCCGCCGTCGGAGGAGGAGCGGGAGCCGTGGGAGCCGTGGACGCAGCTGCGCCTGTCGGGCCACCTGAAGCCGCTGCACTACAATCTGATGCTCACCGCCTTCATGGAGAACTTCACCTTCTCCGGGGAGGTCAACGTGGAGATCGCGGCATCAAATCTGTTGAAATGTATATTATAGCCATATCCTACATATACATGCAATGGTATTTCATGCAGCTACAAAAATAATGGTATTACTGTTTACGTGCTTATATAGAAGAAGTTCTCTGCTTATTTTTTTAACTCTTATTTAAACTTAACTTGTCATACTTTGTTATTAATATACAAAGACAATAAACTTTTAAAACACTAACATCACAATTAAAAGAACTAGAGAATCAAGAGCAAACACATTCAAAAGCTAGCAGAAGACAAGAAATAACTAAAGTCAGAGCAGAACTGAAAGAGACAGAGAATTGAAAAACCCTTCGAAAAATCAATGAATCCAGGAGGTGGTTTTTTTTTTAAAAATTAACAAAATAGATAGACCACTAACCAGACTAATAAAAAGAGAAGAATGAAATAGACACAATAAAAAATGATAAAGGGGAGATCACCACTGAACCCACAGAAATACAAACTACCATCAGTGAATACTATAAACACCTCTATGCAAATAAGCTAGAAAATCTACAAGAAATGGATAAATTCTTAGACACATACACCCTCCAAAGACTAAACCAGGAAGACGTCGAATCCCTGAATAGACCAAAAACAAGTTCTGAAATTGAGGCAGTAACTGATATCCTACCAACCAAAAAAAGCCCAGAACCAGATGGATTCACAGCTAAATTCTACCAGAGGTACAAAGAGGAAGTGGTACCATTCCTTATGAAACTATTCCCAACAATAGAAAAAGAGTGACTCCTCTCTAACTCATTTTATGAGACCAGCATCATCCTGATACCAAAACCTGGCAGAGATTAAAAAAAAAAA;SVTYPE=TRA;CHR2=3;END=25400602;SVLEN=0	GT	./.	E3103918	contig1	size1634	168	cov15.53	88	59	40.9322033898305	42	55	30	0	0	0	0	383	48	38.4791666666667	35	48.3714285714286	34	0	0	0	0	153	0	115	0
10	60477422	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGTTTAAATAAGAGTTAAAAAAATAAGCAGAGAACTTCTTCTATATAAGCACGTAAACAGTAATACCATTATTTTTGTAGCTGCATGAAATACCATTGCATGTATATGTAGGATATGGCTATAATATACATTTCAACAGATTTGATGCCGCGATCTCCACGTTGACCTCCCCGGAGAAGGTGAAGTTCTCCATGAAGGCGGTGAGCATCAGATTGTAGTGCAGCGGCTTCAGGTGGCCCGA;SVTYPE=TRA;CHR2=12;END=72667074;SVLEN=0	GT	./.	E20059	contig2	size242	12	cov7.49	166	60	59.4833333333333	60	59.4833333333333	47	0	0	0	0	140	55	59.1454545454545	55	59.1454545454545	33	0	0	0	0	9	1	15	0
10	62229266	N	.	<TRA>	11	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTAGTGTATATATATATATATATACACACCACTTTTAATGTATATATATATACACATACACACACACACAGTGCTTTTTAGTATATACTATATATATATAGTGGTATGTGTGTGTATGTATATATATATATATGGGGGTATATATATATATATGGGGGTATATATATATATAGGGTGGTCTATATATATCTTTGGGTATATATATATATATATCGTGGTATATATATATATATATATATATATATATATATATATATATATGGTGGTATATATATATAGTGG;SVTYPE=TRA;CHR2=1;END=222093673;SVLEN=0	GT	./.	E3162124	contig2	size284	2	cov1.06	35	0	0	0	0	22	0	0	0	0	100	0	0	0	0	16	0	0	0	0	5	0	11	0
10	73519588	N	.	<TRA>	3	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACTGGCGTGGGGCGCTAGGTGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATGTGTGTGTGTATGTATATATGTGTGTGTGTATGTATATATGTGTGTGTGTGTATATATACACACACACACATATATACACACACACACACACATATACACACACACACACATATATACACACACACACACACACACACACACACACACACACACACACACACACACAAGATAGCTAGCGTCTCACGCCAGTCACAATAGCT;SVTYPE=TRA;CHR2=13;END=70260237;SVLEN=0	GT	./.	E200129	contig1	size283	2	cov1.07	69	1	36	1	36	25	0	0	0	0	99	4	38	3	46.6666666666667	28	0	0	0	0	3	0	6	0
10	80228382	N	.	<TRA>	3	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAACAAAATGAAAAGTCTCCCATGTCTACCTCTTTCTACACAGACACGGCAACCATCCGATTCTCAATCTTTTCCCCACCTTTCCCCCCTTTCTATTCTACAAAACCGCCATTGTCCTCATGGCCCGTTCTCAATGAGCTGTTGGGTACACCTCCCAGACCGGGTGGTGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCTGGCCGGGCGGAGGGGCTCCTCCCTTCCCAGTGGGGGCGGCCGGGCGGAGGCGGCCCTGC;SVTYPE=TRA;CHR2=17;END=56151214;SVLEN=0	GT	./.	E3018158	contig4	size268	2	cov1.13	134	4	2.75	0	0	52	2	43.5	2	43.5	171	20	39.85	13	55.3846153846154	85	6	25	2	58.5	9	0	7	0
10	82093159	N	.	<TRA>	3	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCTGGGATTACAGGCGTGAGCCACCACACCCAGCCAATAATAATTTAATTATACATTTTATAATAATGAAATGAGTATAACTGGATTGTTTGTAACACAAAGGATAAAATCTTGAGGAGATGAATACCCCATTTGCCATGATGTGATTATTATACATTGCAT;SVTYPE=TRA;CHR2=7;END=153127688;SVLEN=0	GT	./.	E66742	contig1	size162	2	cov1.86	93	51	6.31372549019608	0	0	41	10	2.1	0	0	96	15	0	0	0	41	3	0	0	0	5	0	5	0
10	83641806	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACCCTTGCCCTGGGAATCTCTTGCAGTTTTCTTGTCTATATGATTCAGTTTCTTTTTTTATGCTTTAAAAAACAACTTACCTTTTGGAGTTTCTTCAAAGCATTCAACTACATTTTAATAGAAACTACAATTATCTTTCATATTATAAAATCAAGTTTATAATTTTTATTTTTGTAACAATTTATGTCAGTATTCATCACAGAAAAGCATATTCCTCTTTTTCCTTCTGAC;SVTYPE=DEL;CHR2=10;END=83827666;SVLEN=-185860	GT	./.	E3381763	contig2	size231	4	cov2.61	107	5	60	5	60	52	0	0	0	0	84	3	60	3	60	47	0	0	0	0	5	0	5	0
10	89700299	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGATCACACCACAGCACTCTAGCCTAGAGCCTCCCTGTGTGGCAGGCTCTACACTTCAGATAGGCAACAGATCGAGACCTTGTTTCACAAAACGAACAGATCTGCAAAGATCAACCTGTCCTAAGTCATATAATCTCTTTGTGTAAGAGATTATACTTTGTGTAAGAGGTCCACCAGAGGAGTTCAGCAATTTGCTGCTCTTAGGGCAGGGATCAATTCCTTAATATCTTAGGAAGACTAGGTATTGACAGTAATGGTGACAAAGCAATGAAAAGGAAAGGAAGAAGTGATAAGACATGGCAGCAAGCTGAAGTATGATGAGTAAAGAATAGGAATCAAAGTATGTGGAGTGTTAGAGAAAACCTGGATTTAGATCCAGATTCTAGTCCTATCTCTGTCATTAATCTATTGCGTAACCCTGAGCATATCATCTACCTCTCTTTGAGTTTGCTTGTCAATAAAATGAAGAGACTTTGAAATCTGAGACTTCCTGGATAAGTACTAAATACAGATTATGTCACTGATGTCTGCCTCTATTTATTTCTCCCTTTTACCCTAATCTCTATAAGTCTACCTCAGTCATCCTGATCCTATTCTACTTCTCTGATGTTGTTGTCAGATAGGTGTGATCATCCTCATCAGATCTTTTCTGTATTCTTAGAGACAGATAACTTTATCAAAGACCACAGATTTATTAGTATAGCATGTTAAAGTCTTCTAAAGAGTCTCATTGATGCTCTTTTCATCTCAGTACAATTTTTAAAACTGCTGAATGCAAGGTACTGAGCTGTTGGAAGTGACTGACAGATGAATGTAACAGATTCATAGAGAAGGAAAAAGGAAGAAAAACTCATGCTCTTCCTATAGTATTGATATCAGTGTAAGAGCCAAGAGAAAGGTATAAAGTATCATGCAGATATTAAGGGAAAGAAAACATTCACTTTAGTAATCTTTCCTCA;SVTYPE=DEL;CHR2=10;END=89712341;SVLEN=-12042	GT	./.	E3006199	contig1	size960	86	cov13.53	48	46	58.5652173913044	46	58.5652173913044	50	0	0	0	0	0	61	58.7049180327869	61	58.7049180327869	59	0	0	0	0	43	0	40	0
10	104889480	N	.	<TRA>	0.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACGGCAGCCTCCGCCCGGCCGCCGCCCCGTCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGCCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCACAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGTGGTGGGGGCGTCAGCCCCCCGCCCGGCCAGCCGCCCGGTCGCGGCCGGATGGGTGGGCGCCAGCCCCCCGCCCGGCCCGCCGCCCCGTCCC;SVTYPE=TRA;CHR2=7;END=150203478;SVLEN=0	GT	./.	E1916178	contig1	size275	2	cov1.10	108	0	0	0	0	36	0	0	0	0	296	4	0	0	0	89	0	0	0	0	4	0	3	0
10	109628605	N	.	<TRA>	30	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATGTATGTGTATATATATGAGTATATATATGTGTGTGTGTATATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCGGGCAGAAAAGGCAACAGGCAATATAGGGATAGATAATATCATGGAACCTACCAACACTAACTAT;SVTYPE=TRA;CHR2=17;END=52653662;SVLEN=0	GT	./.	E3334393	contig1	size201	2	cov1.50	81	3	0	0	0	31	0	0	0	0	46	62	44.1451612903226	50	52.4	15	15	49.4	13	55	10	0	5	0
10	125013984	N	.	<TRA>	1	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCACCACCACCACCACCACCACCGTCGCCATCACCATCATCATCATCCCCCCACCCCCACCACCACAACCATCATCACTATCATCATCATCATCACCACACCACCACCATCACCACCACCACCATCACACCACCACCACCACTGTCGTCATCACTATCATCATCATCACACCACCACCACCACCATCACCACACCACCACCACCGCCACCACCATCATCACTATCATCATCACACCACCACCACCACCATCATCACCATCATCA;SVTYPE=TRA;CHR2=3;END=68176845;SVLEN=0	GT	./.	E394917	contig2	size264	2	cov1.14	324	3	39	2	57	149	0	0	0	0	328	1	60	1	60	74	0	0	0	0	3	0	13	1
10	126727725	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTTAGCGCTTATCCACAAGGGCCATTCTTTAGGGAACTTTGCAACTCTGAGATCAAAAGGCAAAGCAGTCCTCTAAGAACTTAGGGGAACTCGCAGGAGTCTGCGTGCATGACGCCACTATGAACCCAATATAAATTTGTTCACAAACTCTATAGTTCACACGATGGGTT;SVTYPE=DEL;CHR2=10;END=126799558;SVLEN=-71833	GT	./.	E217284	contig1	size171	2	cov1.77	620	177	1.44632768361582	0	0	219	62	1.38709677419355	0	0	78	103	3.39805825242718	1	53	53	43	2.6046511627907	1	46	17	1	16	1
11	1162660	N	.	<INV>	38	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGAGTGAGTGAGTGAATAGGTGAGTGGGTGAGTGGGTGAGTGGGCGAGTGAGTGAATGGGGGAATGGGTGAGTGAATGGTTGAGTCAGTGAGTGGGTGAGTGAGGGGGGGAGTGGGTGAATGGGTGAGTGGGTGAGTGGGTGAGTGAGTGGGAGAGTGAGTGGGTGGATGAGTGAGTGGGCGAGTGAGTGGGTGGGTGAGTGAGGGGGTGGGTGGGTGAGTGGGCGAGTGAGTGAGTGGGCGAGTGGGTGAGTGGGTGGGTGAGTGGGGGGGTGAGGAGTGGGG;SVTYPE=INV;CHR2=11;END=64983485;SVLEN=63820824	GT	./.	E3155152	contig1	size284	2	cov1.06	178	1	2	0	0	54	0	0	0	0	86	0	0	0	0	30	0	0	0	0	4	0	3	0
11	3152705	N	.	<TRA>	8.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGGGGGGTGGGGGGGTGGATGGATGGATGAATGGGTGGATGGATGGATGGGTGAATGGCTGGGTGGGTGGGTGGATGGATAGATAGTTGAGTGGGCAAATGGATGGATGGATGGGTGGATGGGTGGGTAGATGGATGGATGGATGGATGGATAGATGGATGGATGGATGGATGGACGGACGGATGGGGGGGTGGATGGATGGATGGGTGGATGGGGAGGTGGGGGGAAGGGTGGATGGGGGGAAGGATGGAAGGGAGTGGGGAAGGCGGGGTGGGGGGGAGAGA;SVTYPE=TRA;CHR2=20;END=62123334;SVLEN=0	GT	./.	E3048631	contig4	size285	2	cov1.06	91	0	0	0	0	40	1	52	1	52	168	0	0	0	0	41	1	46	1	46	4	0	17	1
11	6153093	N	.	<TRA>	17.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTAGGTACATACACCAAAAAAAGTAAAGTAAAAAAAAAATAACGAAAATAAAAAAAGAAAGAAAGCAAGAAGAAAGAAAGAGAAAGAAAAAAAGGCATAAAGAAAGAAGGAAACAAAGAAAGAAAGGAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAAGAAAGAAGGAATGAATGAAAGAAAAGAAAGCAAGAAAGAAAGAAAGAAAGAAAAAGAAAAGAAAGAAAGAAAAGCAAGCAAGAAAGCACGAAAGCAAGC;SVTYPE=TRA;CHR2=17;END=43442995;SVLEN=0	GT	./.	E332019	contig1	size286	2	cov1.06	809	1	60	1	60	268	0	0	0	0	129	5	48.8	4	55	48	5	51.6	4	59.25	33	2	3	0
11	6153148	N	.	<TRA>	17.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTAGGTACATACACCAAAAAAAGTAAAGTAAAAAAAAAATAACGAAAATAAAAAAAGAAAGAAAGCAAGAAGAAAGAAAGAGAAAGAAAAAAAGGCATAAAGAAAGAAGGAAACAAAGAAAGAAAGGAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAAGAAAGAAGGAATGAATGAAAGAAAAGAAAGCAAGAAAGAAAGAAAGAAAGAAAAAGAAAAGAAAGAAAGAAAAGCAAGCAAGAAAGCACGAAAGCAAGC;SVTYPE=TRA;CHR2=17;END=43442995;SVLEN=0	GT	./.	E332019	contig1	size286	2	cov1.06	331	0	0	0	0	102	1	0	0	0	129	5	48.8	4	55	48	5	51.6	4	59.25	33	2	3	0
11	22732056	N	.	<TRA>	53.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAGACTCTGAATTCACAATTTGCTGCCAACAATGATAAATTATGATGTCATGGAACATGCAGAATATTTGTTGGAAATGAAAAATTCAAGATATATATATATGTGTGTAGATATATGTGTGTGTGTGTGTCTGTGTGTATATATAGATATATATACACACACTGAAGGAAAGGTGTGGGTAAATGAAGAAATATAATTTGGAGAAATTATGCCCAAAATACACAAACTTAAATGGAAAGTATAGCTGTAGATATTAAGGAATG;SVTYPE=TRA;CHR2=7;END=83088266;SVLEN=0	GT	./.	E1114601	contig1	size265	2	cov1.14	128	16	60	16	60	36	0	0	0	0	138	0	0	0	0	51	0	0	0	0	3	0	0	1
11	24623866	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATCTATGCACACATATATATGCACACACATATATGCACCCATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACATACATATATGCACACATATATATGTACA;SVTYPE=TRA;CHR2=1;END=152797833;SVLEN=0	GT	./.	E3075439	contig1	size407	3	cov1.11	509	84	15.6071428571429	25	42.12	86	11	26.3636363636364	6	44.6666666666667	145	0	0	0	0	43	0	0	0	0	4	0	19	1
11	37460103	N	.	<INV>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATAATGCTTATTTAGAGTTAGCATTGATTACAATTTATGTTTAGGATAAATCACGCTGGAGCCCCTTCTTCCATAGGTACAATAATAATTGCATTTATTATTATGGAAGAATAATAGCAAAAGCTGAAAAAATATTTTAATCTATTTGATAGCCAAATAAACCGGCATATTGTGAAGATTATTAAAACTACTGAAATCCTAGCATTCAAGAGGGGAGGGGCTGGGCACAGTGGCTCAGACCTGTAATCCTAGCACTTTGAGAGGCCTAGGCAGAAGGATCACTAGAGACCAGGTGTTTGAGACCAGCCTGGGAAACATATGGAGACCCTGTCTCTTCAAAAAAAAAAAAATTAATTAGCCGGGGTGTGACGTTTCCCTCCCTGTGTCCATGTGTTCTCACGTTCAACTCCCGCT;SVTYPE=INV;CHR2=11;END=40859239;SVLEN=3399135	GT	./.	E304111	contig3	size414	5	cov1.82	124	3	53.6666666666667	3	53.6666666666667	43	0	0	0	0	101	3	44.3333333333333	2	60	43	0	0	0	0	8	0	5	0
11	39523761	N	.	<TRA>	20	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTCCACCCCCACACACACCCACACACAAACACACATATACATCCACACACACCCCCACGCTCACACACACACATATTCATAGACACACTCACACACATCCATATACACCCTCACACACACACACACACAAACATATACATCTTCACACACACCCACGCTCACATACACACATATTCATAGACACATTCACACACATCCATATACACCTTCACACACACACACACACACACATACACATACACACACACACACACACTCACACACACACACACACACACATACA;SVTYPE=TRA;CHR2=6;END=44012489;SVLEN=0	GT	./.	E1451986	contig1	size283	2	cov1.07	137	0	0	0	0	42	0	0	0	0	755	3	13	1	39	191	3	20	1	60	3	0	4	0
11	46350245	N	.	<TRA>	28	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTTCTGTCTTTCTTTCTTTTTCTTTCTTTCTTTCGTTCTTTCTTTCTCTCTCTCTTTCTCTCTTTCTTTCTTGTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTGTCTTTCTTTCTTTTTCTTTCTTTCTTTCGTTCTTTCTTTTTTTTTCTCTTTCTCTCTTTTTTTCTTTTGTTTTTTTCTTTCTTTCTTTTT;SVTYPE=TRA;CHR2=7;END=101133194;SVLEN=0	GT	./.	E273050	contig1	size284	2	cov1.06	139	7	1.71428571428571	0	0	43	0	0	0	0	97	0	0	0	0	23	0	0	0	0	8	0	5	0
11	46919573	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGGCGGGGCCCGCCGCTGGCCGGTCGGGGCGGCCGGGGGGGGGCGCGCGCCGCCGCCCGGACGGGGCGGCTGGCGGGGCGGCGGGCCGGCGCCCCCACCCCCCTCCCGGACGGGGTGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGAGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGCCCGGCCGGGCAGGGGGGTGACGCCCCGACCTCCCACGCCGGCGGGGGCGCGGGCGGGGCAGCGGGGCGCCTCGCCTCCCCCGCG;SVTYPE=TRA;CHR2=3;END=118437232;SVLEN=0	GT	./.	E968616	contig1	size285	2	cov1.06	111	0	0	0	0	45	0	0	0	0	99	2	30	1	60	33	1	0	0	0	3	0	5	0
11	46919684	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGGCGGGGCCCGCCGCTGGCCGGTCGGGGCGGCCGGGGGGGGGCGCGCGCCGCCGCCCGGACGGGGCGGCTGGCGGGGCGGCGGGCCGGCGCCCCCACCCCCCTCCCGGACGGGGTGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGAGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGCCCGGCCGGGCAGGGGGGTGACGCCCCGACCTCCCACGCCGGCGGGGGCGCGGGCGGGGCAGCGGGGCGCCTCGCCTCCCCCGCG;SVTYPE=TRA;CHR2=3;END=118437232;SVLEN=0	GT	./.	E968616	contig1	size285	2	cov1.06	95	5	32	2	50	38	2	29	1	40	99	2	30	1	60	33	1	0	0	0	3	0	5	0
11	48878105	N	.	<INV>	10.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAACACACTTTTTGTAGAATCTGCAAATGGATATTTGGACGGCGTTGAGGGCTTCGTTGGAAAGGGGAAAATCTTCACATAAAAACGAAAAAGAAGCATTCTCAGAACGTTCTTTGTGACGTTTGCATTCAACCAACACAGAGATGAACATAACATTTCATAGAGCAGTTTTGAAACACCCTTTTCGTTTAATCTGCAATTGGATATTTGGACTACTTTAAGGACTACGTTGGAAACGGGAATATCTTCATATAAAAACT;SVTYPE=INV;CHR2=11;END=48955612;SVLEN=77508	GT	./.	E171298	contig7	size261	2	cov1.16	413	0	0	0	0	158	0	0	0	0	170	21	9.33333333333333	3	48.3333333333333	72	7	8.57142857142857	1	60	15	1	14	1
11	48961135	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCAAAACTGCTCTGTCAAAAGGAAGGTTCTTCTATGTTAGGTGAGTGCATACGTCATAAAGGAGTTTCTGAGAATGTTTCTGTCTAGTGGTTATGGGGAGAGATTTGCTTTTTCACCGAGGGCCTCAGAGCGCGCCAAATATCCACTTGCAGATTCTACAAAAAGAGTGTATCAAAACTGCTCTGTCAAAAGGAAGGTTCTTTTCTGTTAGGTGAGTGCATACGTCATAAAGGAGTATCGGAGAATGCTTCTGTCTAGTGGTTATGGGAAGATGTTTGCTTTTTCA;SVTYPE=DUP;CHR2=11;END=55021850;SVLEN=6060715	GT	./.	E2025068	contig5	size286	2	cov1.06	775	42	6.57142857142857	2	38	245	9	9.77777777777778	1	42	110476	100072	2.43045007594532	173	43.7341040462428	36856	33326	2.54542999459881	52	42.9615384615385	9	0	5	0
11	50072654	N	.	<TRA>	5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTGAGGAAGGAGAATGGCGTGAACCCAGGTGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCAATCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAGGTTTAACTCTATAGGTTGAATCCACACATCACCAAGCAGTTTCACAGATAGCTTCTATCTAGTTTATATCTGGGGATATTTTCTTTATCACCATAGG;SVTYPE=TRA;CHR2=4;END=37231762;SVLEN=0	GT	./.	E140073	contig1	size213	2	cov1.42	267	17	5.17647058823529	0	0	59	4	0	0	0	112	1	0	0	0	46	0	0	0	0	8	0	7	0
11	50780247	N	.	<INV>	5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTTCCAACATACGTAAAAAAGTACTGGAAATGAACACTTGCAGATTCTACAAAAAGTATGTTTCAACACTGCTCTATCAAAAGAAAGGTTCAGCGATGTGAATTGAACACACACATCACAAAGGAGTTTCAGAGAATGCTTCTGTCTAGTGTTTAAGTGACGATATTACCTTTTCCCACATAGGCAACA;SVTYPE=INV;CHR2=11;END=55023431;SVLEN=4243183	GT	./.	E4051788	contig3	size191	2	cov1.58	479	57	4.50877192982456	1	58	149	20	2.25	0	0	974	495	4.08282828282828	8	38	380	213	3.1924882629108	2	42	3	0	4	0
11	56869836	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGAACAAAAAGAAGAAGAAGAAGAAAAAAAAGAAGAAGAAAAAAGAAGAAGGAAGAGGAAGAGGAACAAGAACAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGTATTGCAGGGAAATAGGGAAATGTAAGACCTTCCATTTAGATCCCAAAGACTGATCTCCCAAA;SVTYPE=TRA;CHR2=4;END=47660;SVLEN=0	GT	./.	E3684082	contig1	size270	2	cov1.12	85	3	13	0	0	21	0	0	0	0	713	0	0	0	0	208	0	0	0	0	8	0	6	0
11	58171838	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTGGGAGAAATACCTAATGCGAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCAAATGTATACATATGTAACTAACCGGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAATGCTAGATGTTAAGCACAGCCTAATGAGTGCTAGTTATAATATTAAATATTATTATTGGATAGGTGATAATCTTTTTGTTGGTTTGATAAAGGTGGATGGTGACAAGCAGGGCTGCAGGC;SVTYPE=TRA;CHR2=2;END=116246477;SVLEN=0	GT	./.	E2689772	contig3	size263	2	cov1.15	109	80	44.6125	59	59.6779661016949	34	26	44.0384615384615	19	60	128	23	6.78260869565217	4	39	44	7	0	0	0	56	2	7	0
11	69782213	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGAAAAAGGAAATAAAATAAGACAAAAAGAGAAAAAAAAGAAAAGGAAGGAAGGAAAGAAGGAAGCAAGAAGAAGGAAGGAAGGAAGGGGAAGAAAAGAAGAAGGAAGGGAGGGAGGAAAGAAAAGAAAGAGAAAAAAGAAAGAAAGAGAGAAAGAAAAGAAAGAAGGGAGGAAGGAAGAAAAAGAAAGAAAAGAAAGAAAAAAGAGAAAGAAAGGGAAAATCTAAGAGTAAATCTTGATCTAGGAAAGCCTTCTTAGATACAACAGCAAAAGCACAAGTAGGT;SVTYPE=TRA;CHR2=6;END=95008249;SVLEN=0	GT	./.	E1541643	contig4	size285	2	cov1.06	127	1	18	0	0	46	0	0	0	0	121	12	60	12	60	39	1	60	1	60	9	1	0	0
11	80325525	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAGATTTTTTTTCTATTTCTGTAAAGAATGTTACTGGTATTTTGAAATGAATTTAATTGAATCTGTAGATTGCTATGGATAGTATGGATATTTTAACAATATTGATTTTTCTAATTCATAAAGATTGAATTTTTTTTTTTTTTTTTTTTTTGCTTCTTATGTCTCTTTTATTTATTTTTTCTCATCAGCTTTTATGTTCAAGGGGTGCTTTTGCCATGAGTAAATTGCACATGGTGGGGGTTTGATATACAGATAATTTTGTTATCCAGTTAATG;SVTYPE=TRA;CHR2=X;END=83928631;SVLEN=0	GT	./.	E2536892	contig3	size275	2	cov1.10	116	1	60	1	60	46	0	0	0	0	56	12	60	12	60	26	0	0	0	0	0	0	0	0
11	80785602	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATGTTCTTTCTTCTAATACTTTGGGTTTGTTGTGCAGATGTCATTTACTCTTTTGCTTTCTAATAATTTTATTCATCTATATTTTATTCTATTATTAATCAAATAATATGCAGTGAGCTGATTGCTTTCTATTCCTAAATAGTTACCGCAATTTGAACTGGCACATGGTAGACATTCAATTATCTCTTAAATAAGTAAATGAAGATAAGTGATGTTCACCATCATCATAAATCTCAAAACACTAACATGCTCACAACTCATAGATATACTTAGAATAGTTTAAAATGTTATTCCTTGTAAGTTTAGGCAATGCCCTTGATCCCAAATTATTAGCAATTAAACATTTATTTTAGTCTACTTTT;SVTYPE=DEL;CHR2=11;END=81093780;SVLEN=-308178	GT	./.	E507423	contig1	size363	32	cov13.31	137	44	58.6136363636364	44	58.6136363636364	42	0	0	0	0	85	35	58.1714285714286	35	58.1714285714286	43	0	0	0	0	32	0	27	0
11	85041694	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAGCTGGAGGCGTACGATCACTGCGAGGAGAGGTGGGGAGGGGGGCGGGTCGGGAGGGGCATAGCATTGGGAGGTATACCTAATGCTATATGACAAGTTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGCGCACATGTACCATAAAACTTAGATTATAATAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAATGGTTACCCACTGCCTGCAAATCCTTGGCAAG;SVTYPE=TRA;CHR2=4;END=158907289;SVLEN=0	GT	./.	E474657	contig2	size267	2	cov1.13	56	9	32.3333333333333	5	47.8	30	3	13.3333333333333	1	40	232	92	51.0434782608696	78	59.7179487179487	61	24	43.1666666666667	17	60	11	1	13	1
11	85246640	N	.	<TRA>	22.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATGCGGTAGCTCCTGGCTATAGTTAGGGTTTTTTGTTTTGTTTCGCTTTTATGGCTGAATACTATTCCAGTGTATGGCTATATTACATTTTGTTTATTCATTCATTGGTTGGTGGCCATTTGGGTTATTTCCTCCTTTGGGCTATTATGAATAATGCCGCTATGAACATTCATGTACAGATTTTGTGCAGACATGTTTCCATCTCTCTTGGATATATCTAGGAGTAGAATTACTGGGTCATATGGTAACTCTATGTTCAACTGTTTAAGGAACTGCCAGATTGTTTTTCAAAGCCGCCGCACCATTTCACATTCCCACCAGAAACGTATGAGGGTTCCAATTTCTCCAAATCCTTGCCAATATGTGTTATCATCTGATGTTTTAAAATCATAACCATCCTAGTGGGTGT;SVTYPE=TRA;CHR2=2;END=88859625;SVLEN=0	GT	./.	E4429275	contig2	size411	7	cov2.57	114	0	0	0	0	48	0	0	0	0	211	1	40	1	40	86	0	0	0	0	4	0	4	0
11	85246752	N	.	<TRA>	22.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATGCGGTAGCTCCTGGCTATAGTTAGGGTTTTTTGTTTTGTTTCGCTTTTATGGCTGAATACTATTCCAGTGTATGGCTATATTACATTTTGTTTATTCATTCATTGGTTGGTGGCCATTTGGGTTATTTCCTCCTTTGGGCTATTATGAATAATGCCGCTATGAACATTCATGTACAGATTTTGTGCAGACATGTTTCCATCTCTCTTGGATATATCTAGGAGTAGAATTACTGGGTCATATGGTAACTCTATGTTCAACTGTTTAAGGAACTGCCAGATTGTTTTTCAAAGCCGCCGCACCATTTCACATTCCCACCAGAAACGTATGAGGGTTCCAATTTCTCCAAATCCTTGCCAATATGTGTTATCATCTGATGTTTTAAAATCATAACCATCCTAGTGGGTGT;SVTYPE=TRA;CHR2=2;END=88859625;SVLEN=0	GT	./.	E4429275	contig2	size411	7	cov2.57	160	0	0	0	0	65	0	0	0	0	211	1	40	1	40	86	0	0	0	0	4	0	4	0
11	89637792	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACACCTTCTGTGACATTTGGAGTAACATCCCCTAGGATAGTACAAATAATATCACAGGGTGTACATCCCCTGTGACCTGAGGAGTAATATCTTTCTAGAATACTATGAATAGTATCACAATGTATACACCCCGTGTGTCATTAGGAGTAACATCCCACAAAACTATAACGAATAATTTCACAAGGTGTACACCCTCTGCAACATTAAAAGTAACATTTCCCTAGAATATTACGATAATATC;SVTYPE=INV;CHR2=11;END=89672741;SVLEN=34950	GT	./.	E3614755	contig1	size241	2	cov1.25	112	2	0	0	0	54	0	0	0	0	132	0	0	0	0	41	0	0	0	0	9	0	9	0
11	89639891	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCTAATATCCAGGGGGTAGAGTATGACATTACTCCCAATGTAACAGTGGGTGTACATCCCCCCTGTGATATTTCTCTTAACATTCAAAGGCGGAGAGGATGATATTACTCTCAATCTCGAAGAAAGTGTACACTCCCGAGTGATATTGTTCCTAAT;SVTYPE=INV;CHR2=11;END=89671286;SVLEN=31394	GT	./.	E1163772	contig1	size157	2	cov1.92	123	1	0	0	0	44	0	0	0	0	110	1	0	0	0	36	0	0	0	0	3	0	5	0
11	97542045	N	.	<TRA>	32	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTACAGAGAACATAAGTAGAAAATAGAATTATATTATTTATCTTATTTTTTTTTAGAATATATAATAACCATCACTTTAAGAGGAGCACTGTTTTTTATATATATATATATATATATATATATATATATACACACACATATATACGTATATATGTGTGTGTATATATATATATATATATATATATATATATAAAAAACAGTGCTCCTCTTAAAGTGATGTTGATTGTATATTCTCCAAAAAATTAGGATAACTAAGATAATTCTATTTCCTCCTTATCTGCTCTGTAGACT;SVTYPE=TRA;CHR2=16;END=7733013;SVLEN=0	GT	./.	E1515434	contig2	size292	3	cov1.55	43	1	0	0	0	28	1	60	1	60	52	11	42.2727272727273	8	56.75	19	4	46.5	3	60	5	0	4	0
11	97542047	N	.	<TRA>	36	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTACAGAGAACATAAGTAGAAAATAGAATTATATTATTTATCTTATTTTTTTTTAGAATATATAATAACCATCACTTTAAGAGGAGCACTGTTTTTTATATATATATATATATATATATATATATATATACACACACATATATACGTATATATGTGTGTGTATATATATATATATATATATATATATATATAAAAAACAGTGCTCCTCTTAAAGTGATGTTGATTGTATATTCTCCAAAAAATTAGGATAACTAAGATAATTCTATTTCCTCCTTATCTGCTCTGTAGACT;SVTYPE=TRA;CHR2=16;END=7733013;SVLEN=0	GT	./.	E1515434	contig2	size292	3	cov1.55	41	2	4	0	0	31	0	0	0	0	52	11	42.2727272727273	8	56.75	19	4	46.5	3	60	5	0	4	0
11	97542101	N	.	<TRA>	32	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTACAGAGAACATAAGTAGAAAATAGAATTATATTATTTATCTTATTTTTTTTTAGAATATATAATAACCATCACTTTAAGAGGAGCACTGTTTTTTATATATATATATATATATATATATATATATATACACACACATATATACGTATATATGTGTGTGTATATATATATATATATATATATATATATATAAAAAACAGTGCTCCTCTTAAAGTGATGTTGATTGTATATTCTCCAAAAAATTAGGATAACTAAGATAATTCTATTTCCTCCTTATCTGCTCTGTAGACT;SVTYPE=TRA;CHR2=16;END=7733013;SVLEN=0	GT	./.	E1515434	contig2	size292	3	cov1.55	67	0	0	0	0	36	0	0	0	0	52	11	42.2727272727273	8	56.75	19	4	46.5	3	60	5	0	4	0
11	99052297	N	.	<TRA>	5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACTAGTAATCAGTACCTGGGTCATCATGTCTGAGGTGGAGAGTGAATTCATCAACTGGGCAGCAACCACGGCAACAGAAGCCAACCGCAGTCAATGCTGGCTATGCATCAAATTGCCAGAGACCACAGGAAATGGACTGCCTTGCAGAGTTGTCCTTGCCAATATTTCTGAATGGCTCTGTCACTACAAATGGGGCCAAAACAACAACACTTGCAATCCAACCTGGACTTCCTTTGCTACTTTAATAACATCTTAATACACTATAATTGTA;SVTYPE=TRA;CHR2=5;END=94594797;SVLEN=0	GT	./.	E1963720	contig2	size272	2	cov1.11	156	12	9.75	1	40	43	3	9	0	0	187	0	0	0	0	84	0	0	0	0	15	0	16	0
11	100400476	N	.	<TRA>	18	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCTTCAAATGGCCACACTACCTCTCCAGTAAGTTTATAAATCAGTCCAAGATAGCTAAAATTACAGAAATCAAATTCAGAATATGAATAGAAATAAAGATCATTAAAATGCAGAAGTAACTTGAAACTCAATTCAAAAACGTTAAGAATCATAATGAAATGATACAGGAGCTGAGAGACAAAAGAGCAAGTATTAAGAGCATAACTAACCTGAGAGAGCTA;SVTYPE=TRA;CHR2=9;END=83033241;SVLEN=0	GT	./.	E4055928	contig1	size222	2	cov1.36	806	66	10.030303030303	1	40	193	14	10	0	0	560	5	6	0	0	112	0	0	0	0	12	0	12	0
12	12476074	N	.	<TRA>	9	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGAGGGGGGGGGGGGGGGGAAGAAAGGGGGGGGAAGGGGGGGAGAGGAGGGGGGGGAGAGGAGGAGGGGAGGGGGAGGGGAGGGGGAGAGGAGGGGGGGGAGGGGAGGGGGAAGGGGAGGAGAGGAGGAGGAAGGGGAGGAGAGGAGGAGGAAGGGGAGGAGAGGAGGAGGAGGAGAGGAGGAGGAGGAGAGGAGGAGGGGGAGGAGCGGAGGAGGGGGAGGAGAGGAGGAGGAGGAGACGAGGAGGAGGGGGAGGGGAGGAGGAGAGGAGAAGGAG;SVTYPE=TRA;CHR2=6;END=170802335;SVLEN=0	GT	./.	E3807073	contig5	size279	2	cov1.08	95	1	0	0	0	29	0	0	0	0	68	0	0	0	0	20	0	0	0	0	22	1	3	0
12	15513754	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATACCTATATGTTTATAAGTTAAAACACACACACTATGTGTGTGTATATGTGTGTATATATACGTGTGTATATATGTGTGTATATGTGTGTATATATACGTGTGTATATACACACACATATATACACACGTATATATACACACACATAGTGTGTGTGTGTTTTAACTTATAAACATATAGGTATATGTTTAAACATATACAAATATAAGAGAAAATTTGTATATATTGAAACATATACCAGTATAAGAGAAATTATGATAAATATTTAATAAATAGCTCAAGAATCACTTGCTGCAGAAATTCAGAACATGGGTCGGGCGTGGT;SVTYPE=DEL;CHR2=12;END=15513880;SVLEN=-126	GT	./.	E3879447	contig1	size325	7	cov3.25	98	5	36.8	4	44	35	1	60	1	60	68	23	53.695652173913	19	60.9473684210526	20	1	48	1	48	423	160	408	153
12	22210826	N	.	<TRA>	29.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGAACAAAGCTGAAACATCATTTAAAAAATTACATTAATTCTCCAACTTTAGGCATCTTTTTTTTCTTTTTTTCTTTTTTTTAGACAGTCTCGCTCTGTTGCCCGGGCTATAGTGGCACGATCTCGGCTCACTGCAATCTCCCCCCTCCGGGTTCATGGTA;SVTYPE=TRA;CHR2=1;END=155855386;SVLEN=0	GT	./.	E4307002	contig1	size162	2	cov1.86	88	3	31.6666666666667	2	47.5	23	0	0	0	0	162	10	26.9	5	53.8	43	3	20	1	60	9	0	3	0
12	33135502	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAGACAGAGACAGACAGAGAGAAACAGGCAGAAAGCGAAAGAGAGAGAGAAAAACAGGCAGGACAGGAGGGAGAGAGAGAGAAAGAGAGAGAAAGAAAGGACAGAAGGAGCGAGAGAGGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCAATCCCACCACGAGGACCCGGAAATAGTGTGTGATCTGTGTCCCGGCCTAGTCCCCTGTCTGGTGTGTCGCTGACTGAGGATTCCACAAATGAAGGGCAGCGGGGTCGCTT;SVTYPE=TRA;CHR2=5;END=63979148;SVLEN=0	GT	./.	E3942439	contig13	size285	2	cov1.06	117	8	0.625	0	0	33	2	0	0	0	71	1	53	1	53	37	0	0	0	0	4	0	3	0
12	38387284	N	.	<DEL>	14	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGATGTGTGAATTCATCTCACAGGGTTAAATCTTTCCTTTGATTCAGCAGGTTGGAAACACTCTTTTCGTAGAACCTGTGAAAGGACGTTGGGTAGCCCATTGAAGCCTATTAGGCAAAATCGAATACCCCCAGATAAAAACAAGAAGGAATCTATCTTTGAAACTGCTTTGTGATGTGTGGATACATATCACAGAGTTAAACCTTTCTTTTGATTCAGCAGGTTAGAAACATTGTTTTTGTACTATCCGCTAAAGGATGTTTCGGAGCC;SVTYPE=DEL;CHR2=12;END=38398935;SVLEN=-11651	GT	./.	E3319722	contig1	size270	2	cov1.12	310	14	16.1428571428571	3	49	120	6	13	1	60	789	35	10.5714285714286	4	45	313	10	9	2	33	4	0	4	0
12	49236229	N	.	<TRA>	2.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGATGTGGGGAGCGCCTCTGCCCTGCCGCCCCGTCTGGGAAGGAGGTGGGGGAGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTCGGATCGCGTATGCCGTCTT;SVTYPE=TRA;CHR2=7;END=112337475;SVLEN=0	GT	./.	E1595249	contig1	size208	2	cov1.45	67	0	0	0	0	28	0	0	0	0	112	1	0	0	0	31	0	0	0	0	5	0	3	0
12	63358705	N	.	<TRA>	30	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTGGCATCCTGGGACTCTATGAATTTAGAAATCCGTCATGCAAGAGGAGTTCAGGTGTAAATTTTGTTACTATAAATCACTTGCTCATCTAACAGGAATTGTTTACATGTAGCTGATGATCTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGACCGGGTTCCCCCCTTTTCCCCCGGGTTGGATGGCATGGGGGGGTCTCCGCCCCCTCGCACCCCCCCCCCCCCGGGTGCCCCCCTTTCCCCCCCCCACCCCCCCC;SVTYPE=TRA;CHR2=X;END=133999127;SVLEN=0	GT	./.	E3031114	contig4	size262	2	cov1.15	186	48	52.2708333333333	42	59.0952380952381	60	14	42.8571428571429	10	60	99	1	0	0	0	19	0	0	0	0	5	0	7	0
12	69610356	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTTTTTCTTTTTCTTATTATTTTTTTGAGTCAGAGTCTTCCTTTGTCTCCCAGGCTGGAATGCAGTGGCACTATCTTGGCTCACTGCAACCTCTGCCTCCCAAGCTCAAGAAGTCCTCCCACCTCAGCCTCCTGAGAAGCTGGGACTACAGGTGCACCACTGCACCTG;SVTYPE=TRA;CHR2=20;END=50603476;SVLEN=0	GT	./.	E1505509	contig4	size169	2	cov1.79	96	1	49	1	49	37	0	0	0	0	139	20	55.95	19	57.7894736842105	30	1	60	1	60	1	0	0	0
12	72666892	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAACTTCCAATACTATGTTGAATAGGAGTGGTGAGAGAGGACATTCTTGTCTTGTGCTGGTTTGCAAAGGGAATCCTTCCAGGTTTGCCCATTCAGTATGATATTGGCTGTGCGTTCTCATTAATAGCTCTTATTATTTTGAGATATGTTCCATCAATACCTAGTTTATTGAATGTTATTAGCATGAAGGGTTGTTGAATTTTATTGAAGGCTTTTCCTGCATCTAATGAGATAATTATGTGGTTTTCATCATTGGTTCTGTTTATGTGATGGATTACATTCATTGATTTGCATATGTTGAACCAGCCTTGCATCCCGGGGATGAAGCCGACTTGATCATGGTGAATAAGATTTTTAATGTGCTGCTGGATTCAGTTTGCCAGTATTTTATTGAGGATTTTCGCATTGATGTTCATCAGGGATATTGGCCTGAAATTTTCTTTTTTTTTTTTAATCTCTGCCAGGTTTTGGTATCAGGATGATGCTGGTCTCATAAAATGAGTTAGAGAGGAGTCACTCTTTTTCTATTGTTGGGAATAGTTTCATAAGGAATGGTACCACTTCCTCTTTGTACCTCTGGTAGAATTTAGCTGTGAATCCATCTGGTTCTGTGAATCCATCAGGTGGGGTGGCCAGTCCGGGGACCACGTCGGCCCAGCCGCCGTCGGAGGAGGAGCGGGAGCCGTGGGAGCCGTGGACGCAGCTGCGCCTGTCGGGCCACCTGAAGCCGCTGCACTACAATCTGATGCTCACCGCCTTCATGGAGAACTTCACCTTCTCCGGGGAGGTCAACGTGGAGATCGCGGCATCAAATCTGTTGAAATGTATATTATAGCCATATCCTACATATACATGCAATGGTATTTCATGCAGCTACAAAAATAATGGTATTACTGTTTACGTGCTTATATAGAAGAAGTTCTCTGCTTATTTTTTTAACTCTTATTTAAACTTAACTTGTCATACTTTGTTATTAATATACAAAGACAATAAACTTTTAAAACACTAACATCACAATTAAAAGAACTAGAGAATCAAGAGCAAACACATTCAAAAGCTAGCAGAAGACAAGAAATAACTAAAGTCAGAGCAGAACTGAAAGAGACAGAGAATTGAAAAACCCTTCGAAAAATCAATGAATCCAGGAGGTGGTTTTTTTTTTAAAAATTAACAAAATAGATAGACCACTAACCAGACTAATAAAAAGAGAAGAATGAAATAGACACAATAAAAAATGATAAAGGGGAGATCACCACTGAACCCACAGAAATACAAACTACCATCAGTGAATACTATAAACACCTCTATGCAAATAAGCTAGAAAATCTACAAGAAATGGATAAATTCTTAGACACATACACCCTCCAAAGACTAAACCAGGAAGACGTCGAATCCCTGAATAGACCAAAAACAAGTTCTGAAATTGAGGCAGTAACTGATATCCTACCAACCAAAAAAAGCCCAGAACCAGATGGATTCACAGCTAAATTCTACCAGAGGTACAAAGAGGAAGTGGTACCATTCCTTATGAAACTATTCCCAACAATAGAAAAAGAGTGACTCCTCTCTAACTCATTTTATGAGACCAGCATCATCCTGATACCAAAACCTGGCAGAGATTAAAAAAAAAAA;SVTYPE=TRA;CHR2=3;END=25400602;SVLEN=0	GT	./.	E3103918	contig1	size1634	168	cov15.53	98	42	50.3809523809524	41	51.0243902439024	24	1	40	1	40	383	48	38.4791666666667	35	48.3714285714286	34	0	0	0	0	94	0	66	0
12	86855012	N	.	<TRA>	30	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTGTCTCTTTTAAACAAGTTTTCATATTTTACTTCATTTTGTTCCTGAACTCAACTTGATAATAAAATTATTGGTATAAAAGGTTCTATTTGTAGGGACCCATATGAACTCATACCTTTCTCTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGTCGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTCACGCCATTC;SVTYPE=TRA;CHR2=3;END=174410750;SVLEN=0	GT	./.	E2638358	contig2	size239	3	cov1.90	119	10	0.6	0	0	53	0	0	0	0	281	84	50.5952380952381	71	59.5352112676056	51	10	60	10	60	3	0	4	0
12	87964654	N	.	<TRA>	23.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATATATGCATATGTATATATTTATGTATATATATATACATATATATGTATATATTTATGTATACATGTATATATGTATATATACGTGTATATATGTATATATGCATGTATAAATGTATATATGCATGTATATATGTATACATGCATGTATACATGTATATATGTATATATTTATGTACACATGTATATATGTATA;SVTYPE=TRA;CHR2=13;END=27046978;SVLEN=0	GT	./.	E4236208	contig4	size283	2	cov1.07	117	0	0	0	0	46	0	0	0	0	230	0	0	0	0	69	0	0	0	0	24	1	29	1
12	87964682	N	.	<TRA>	13.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATACATGTATATATATATATATGCATTTATAAATGTATATATGCATGTATATATGTATACATGCATGTATAAATGTATACATGCATGTATATATGTATATATGTATATATTTATGTACACATGTATATATGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATA;SVTYPE=TRA;CHR2=13;END=27046707;SVLEN=0	GT	./.	E1443837	contig1	size376	3	cov1.20	135	1	0	0	0	53	0	0	0	0	120	1	0	0	0	42	0	0	0	0	24	1	29	1
12	87964795	N	.	<TRA>	13.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATACATGTATATATATATATATGCATTTATAAATGTATATATGCATGTATATATGTATACATGCATGTATAAATGTATACATGCATGTATATATGTATATATGTATATATTTATGTACACATGTATATATGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATA;SVTYPE=TRA;CHR2=13;END=27046707;SVLEN=0	GT	./.	E1443837	contig1	size376	3	cov1.20	177	0	0	0	0	41	0	0	0	0	120	1	0	0	0	42	0	0	0	0	24	1	29	1
12	117340491	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCGGGAACCCCAGCCGGGGAAAAAAGAGCAAGCCCCTGTCAAAAAAAAAAAAAAAAAAAGAAATCAGTCTTAGCAGAACCTTGATCTTGGATGTCCAGCCTCCAGAACTGTGAGAAGATAAGTGTTTGCCTTTTTTTTTTTTTTTTTTTGATTGTTGGTCCTTTTCTTTCCCCCCGGCTGGGGGTCAGTCGTGCGAACCC;SVTYPE=TRA;CHR2=7;END=98427057;SVLEN=0	GT	./.	E1339943	contig3	size202	2	cov1.50	183	6	22.1666666666667	2	35.5	75	1	20	0	0	124	11	58.1818181818182	11	58.1818181818182	28	1	60	1	60	13	1	0	0
12	117340525	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCGGGAACCCCAGCCGGGGAAAAAAGAGCAAGCCCCTGTCAAAAAAAAAAAAAAAAAAAGAAATCAGTCTTAGCAGAACCTTGATCTTGGATGTCCAGCCTCCAGAACTGTGAGAAGATAAGTGTTTGCCTTTTTTTTTTTTTTTTTTTGATTGTTGGTCCTTTTCTTTCCCCCCGGCTGGGGGTCAGTCGTGCGAACCC;SVTYPE=TRA;CHR2=7;END=98427057;SVLEN=0	GT	./.	E1339943	contig3	size202	2	cov1.50	175	0	0	0	0	65	0	0	0	0	124	11	58.1818181818182	11	58.1818181818182	28	1	60	1	60	13	1	0	0
12	120861558	N	.	<TRA>	36.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCTTCCCTCCTTCCCTCCCTCCCCTTCCCCCTCCCCTTCCCCTTCCCCCTCTCCTTCCCCTTCTTCTTTCCTTCCTTCCCTTCTCTTTCCTTCCTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTGTGATGGAGTCTCATGCTGTCGCCCAGGCTGGAGTGCAATAGCACCATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCTTGCTTCAGTCCCCTGAGTAGCTGGGATTACAGGCA;SVTYPE=TRA;CHR2=8;END=114340988;SVLEN=0	GT	./.	E958942	contig1	size280	2	cov1.08	101	3	52.6666666666667	3	52.6666666666667	34	1	40	1	40	126	28	58.5714285714286	28	58.5714285714286	43	9	55.5555555555556	9	55.5555555555556	3	0	4	0
13	20385956	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAGTAACCTAAGGGTTTGCCTTATATGGACATGGTCTCATCAGTTGGCTGCCTGTGATTGACTGAAGCTTGGCTGCTTATGATTGGCTGAAACGTGATTATCTGTTACAAAATATATACTCCTAAATTAGGTTTAAATTCCTTTATGGACTAAGTTAGGTCACAGTTCAATATGTAGGAATTTGAAGTATGGAGACAGCAGCAGGCCAGTGGCCTCTTGCTTATTTAATTTAATAAGCCAGGCCAGGCGTGGTGGTACACGCCTGTAAGCCCAGCTACTCAGGAGGCTGAGGCAAGAAAATCGCTTGAACCCAGGAAGCAGAGGTTACAGCGAGCGGAGATCCTGCCACTGCACTCC;SVTYPE=DEL;CHR2=13;END=20386403;SVLEN=-447	GT	./.	E971153	contig2	size358	4	cov1.69	131	5	59.4	5	59.4	42	0	0	0	0	89	11	42.2727272727273	7	60	38	1	60	1	60	559	222	541	212
13	24055063	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCCATTATTTCATCAAGTAATCTTTCTGAAACTTTCTCTCACCTCTCGTTTTGGCATTCCATTATGCATATGTTGATATATTTAATAGTGTCCCACAAGTCTCTAATCATTTTTCTGCCTGTTTTTTCTTTCTGTTCCTCAATGACAGTGGTCTGTGATGTCTGAAGCATCCATCTCTACTCTCAGATTACTATAGTGAGGATCAGGGCATCTCCTGATGCCCTGGGAGGTCTTTCTCAAAGCACACTCTAGTTACTCCATTCTTGTTGCATCATGCAGCCTGGTGGCAGGGCTTTCTTGTTTAGGCACAGCAGCTGGTCACTCACCATGAACCAACCTACTCCTCATTAAACTTTTCATCCTGTGTTTTATCCCTGAAAGCCCAA;SVTYPE=DEL;CHR2=13;END=49362058;SVLEN=-25306995	GT	./.	E2344910	contig3	size387	6	cov2.34	137	5	57.2	5	57.2	45	0	0	0	0	109	3	60	3	60	39	0	0	0	0	1	0	0	0
13	27046707	N	.	<TRA>	13.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATACATGTATATATATATATATGCATTTATAAATGTATATATGCATGTATATATGTATACATGCATGTATAAATGTATACATGCATGTATATATGTATATATGTATATATTTATGTACACATGTATATATGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATGTGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATATTTATGTACACATGTATACATGCATATGTATATA;SVTYPE=TRA;CHR2=12;END=87964682;SVLEN=0	GT	./.	E1443837	contig1	size376	3	cov1.20	120	1	0	0	0	42	0	0	0	0	135	1	0	0	0	53	0	0	0	0	29	1	24	1
13	45957375	N	.	<TRA>	35.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCATACGAGGTCTGATCGTGACTCGAGTTCAGACGTGTGCTCTTCCGATCTTGGGGGGAGGTACACCCCGCGAGGCGGGGACGGAGAGTCAGCCCCTCTTCCCCCACTGGCTCTTGGGACCCCCATCGCGGATCCTAAGATCCTTAGGACAGATCGGAAGAGCGTCGTGTAGGGACAGAGTGTAGATCTCGGTGGTCGCCGT;SVTYPE=TRA;CHR2=12;END=31273045;SVLEN=0	GT	./.	E471367	contig2	size203	2	cov1.49	83	0	0	0	0	41	0	0	0	0	104	2	60	2	60	56	1	40	1	40	5	0	12	1
13	45957408	N	.	<TRA>	35.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCATACGAGGTCTGATCGTGACTCGAGTTCAGACGTGTGCTCTTCCGATCTTGGGGGGAGGTACACCCCGCGAGGCGGGGACGGAGAGTCAGCCCCTCTTCCCCCACTGGCTCTTGGGACCCCCATCGCGGATCCTAAGATCCTTAGGACAGATCGGAAGAGCGTCGTGTAGGGACAGAGTGTAGATCTCGGTGGTCGCCGT;SVTYPE=TRA;CHR2=12;END=31273045;SVLEN=0	GT	./.	E471367	contig2	size203	2	cov1.49	95	2	8	0	0	44	0	0	0	0	104	2	60	2	60	56	1	40	1	40	5	0	12	1
13	70260237	N	.	<TRA>	3	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACTGGCGTGGGGCGCTAGGTGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATGTGTGTGTGTATGTATATATGTGTGTGTGTATGTATATATGTGTGTGTGTGTATATATACACACACACACATATATACACACACACACACACATATACACACACACACACATATATACACACACACACACACACACACACACACACACACACACACACACACACACAAGATAGCTAGCGTCTCACGCCAGTCACAATAGCT;SVTYPE=TRA;CHR2=10;END=73519588;SVLEN=0	GT	./.	E200129	contig1	size283	2	cov1.07	99	4	38	3	46.6666666666667	28	0	0	0	0	69	1	36	1	36	25	0	0	0	0	6	0	3	0
13	78420515	N	.	<TRA>	0.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTAGCCTCTCACTCACTCACTCTCTAAAAATACCCTAACATTTTTGGACTGCGGTTCGGTTCACTCGGTAACTGAAATCACAGAAAGTGAAACTGCAGATAAGGGGAGATTGTTACAGAGTATCAGTTGGGGAAGATGAAAAAATTCTTGAGATCTATAGTAGTGATGGTTGCTCATGTACATTGAGCAGCAAATGTACTTAATGCTACTGAACTGTACGCTTAAAAATGGTTAAAATGGTCATTTTTATGTTATATTTTACAACAATAAAAGACATACTTTT;SVTYPE=TRA;CHR2=10;END=27111884;SVLEN=0	GT	./.	E3640208	contig1	size283	3	cov1.60	141	6	1.66666666666667	0	0	45	4	0	0	0	223	7	0	0	0	106	4	0	0	0	4	0	5	0
13	78420555	N	.	<TRA>	0.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTAGCCTCTCACTCACTCACTCTCTAAAAATACCCTAACATTTTTGGACTGCGGTTCGGTTCACTCGGTAACTGAAATCACAGAAAGTGAAACTGCAGATAAGGGGAGATTGTTACAGAGTATCAGTTGGGGAAGATGAAAAAATTCTTGAGATCTATAGTAGTGATGGTTGCTCATGTACATTGAGCAGCAAATGTACTTAATGCTACTGAACTGTACGCTTAAAAATGGTTAAAATGGTCATTTTTATGTTATATTTTACAACAATAAAAGACATACTTTT;SVTYPE=TRA;CHR2=10;END=27111884;SVLEN=0	GT	./.	E3640208	contig1	size283	3	cov1.60	272	1	0	0	0	97	2	0	0	0	223	7	0	0	0	106	4	0	0	0	4	0	5	0
13	81281913	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGGGGCTCTTCCGATCTGAGGCGGGGGCTGAGAGCCAGCTCCTCGGCCCCCCCTGGCTCTTAGGACCCCATCGCAGGAAGGGGATGCACCCCCCGCGAGGCCGGGACTGAGAGGATGCGCCTCTTCCCCCCCTGTGTCTTGGGACCCCCATCGCAGGGGGGGGAGGCACTCCCCGCGAGGCGGGGACTGAGAGACAGCCCCTCTTCCTCCTCGGCCCCTCAGGACCCCCACCGCAGGGGGGGGGGGCACCCCCGCGGGGCGGGGGCGGGG;SVTYPE=TRA;CHR2=12;END=9558535;SVLEN=0	GT	./.	E3329494	contig2	size271	2	cov1.11	107	5	48	4	60	41	1	60	1	60	116	9	1	0	0	36	7	5.71428571428571	1	30	18	1	24	1
13	82000293	N	.	<TRA>	44	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATAATGCAGATCAATTCTTTACATTTTCCCATAAAGTATTTATCAACTCCATCTTCCTTTGTGGAGTGTCTCTATTTCTGTTCTGCTTTTTCAATTTTGACTCATTGTTTTTTTCTGATTTTTTGTGTTTTTTTTTTTTTTTTTTCTTTTTCATTCTTTGTCCCCATTTCTTCTTCCTCCTTTTTAATTTCATAACCTTTGATG;SVTYPE=TRA;CHR2=18;END=23536649;SVLEN=0	GT	./.	E916441	contig2	size206	2	cov1.47	121	13	58.4615384615385	13	58.4615384615385	41	0	0	0	0	111	1	17	0	0	43	0	0	0	0	0	0	1	0
13	100115285	N	.	<TRA>	41.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGGATAAATGGGTAGCTGGGTGGATGGGTGGGTGGGGTGGGTGGATGATGCATGGATGAATGGATGGATGGATAGATGAATGGATGAATGGATGGATGGATACATGGGTGGATGGATAAATGGATGGACGAATGGAGGATGGATGGATGGATGGATGGATGGATGGATGGATGGACAGGTGGATGGATGGATGGATGGATGGATGGGTGGATGGGTGGGTGGATGGATGGGTGGATGGATGGATGGATGGATGGAGGGAGGGATAGGGGGATGGGTGGGTGGAGG;SVTYPE=TRA;CHR2=7;END=127253027;SVLEN=0	GT	./.	E3953535	contig1	size286	2	cov1.06	149	6	8.16666666666667	0	0	64	1	14	0	0	290	0	0	0	0	28	0	0	0	0	23	2	3	0
14	20974785	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGACGTGTGCTCTCCGGACGCCGGCCCGCCCCGGGGGGGAGGGGGGGGGTTCTGTCAAGCAGAAGACGGCCTACGCGATCTGGTCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCGCCGCCCAGTCCGGGAGGGAGGTGGGGGGATCAAGATCGGAAGAGCGTCGTGGAGGGGAAGAGTGTAGATCTCGGTGGTCGCCGTATCAGTAAAAAAAGCGGCCCCGTCCGGGAGGGAGGGGGGGGGGTCAAGATCGGAAGAGCGTCGGGGA;SVTYPE=TRA;CHR2=15;END=69256821;SVLEN=0	GT	./.	E1453865	contig1	size270	2	cov1.12	53	0	0	0	0	22	0	0	0	0	285	7	5.71428571428571	0	0	118	2	9	0	0	3	0	4	0
14	21480704	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAACATGGTAAAACCCTCTCTCTACAAACATACAAACATTAACCAGTTGTGGTGATGTACACCTGTATTCCCAGCTACTAGGGAGGCTGAGGTGAGAGGATTGTTTGAGCCTGGGAGGCCAAGATTGCAGTGAGCTGAAATCACACCACTGCGTTTCCATGTGGGCAACAAAGTGAGACCCTGACTCAAAAAATAAAAACACATTAACCTGAAAGTCCCCTTTATTCCCTTCTCTTCAAACTCACCTTTT;SVTYPE=INV;CHR2=14;END=50712941;SVLEN=29232238	GT	./.	E2951981	contig5	size250	2	cov1.21	159	1	0	0	0	54	0	0	0	0	116	14	2.35714285714286	0	0	49	4	0	0	0	3	0	3	0
14	33214739	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCTCTTTCTGTTTCTCTCTCTCCGTCTCTGTCTTTCTCTGACTGTCTCTCTCTTTCCTTCTCTCTGTCTCTCTCTGCCTGTCTCTCTCCCTCTGTCTTCTTTCTTTCTCTCTCTCTCTTCCTTTCTGTCTCTCTCTCTCTCTCTCTCTGTCTGTCTCTCTCACTGTGTGTGTCTCTCTTCTGTCTTCCTCTCCTTCTCTGCCTGTCCGTCTTTCTTTCTGTCTCCCCCTCCCTCTCCCTTCCTTTTTGTTTTTCTCTCTCCCTCTCTCCCTTTCTTTCTCTTTT;SVTYPE=TRA;CHR2=21;END=47404822;SVLEN=0	GT	./.	E2631043	contig1	size285	2	cov1.06	984	19	3.21052631578947	1	36	323	2	0	0	0	654	30	1.5	0	0	208	12	5.41666666666667	0	0	5	0	7	0
14	65712014	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCAGCACACGCCACCGTGCCCAGCTAATTTATGTTTTGTTTTGTATAGACAGGGTCTTGTTATATTGCCCAGGCGTCTCGAACTCCCGGACTCAAGCGATCCGCCCGCCTTGGCCTCCCAAGTAGCAGGGATTACAGGCACCGGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGATAGGGCTTCACCATGTTGGCCAGGCTGGTCTGGAACTCCTGACCTCGG;SVTYPE=TRA;CHR2=16;END=3068815;SVLEN=0	GT	./.	E2788548	contig1	size262	2	cov1.15	102	1	51	1	51	32	0	0	0	0	110	1	3	0	0	32	0	0	0	0	4	0	3	0
14	70198809	N	.	<TRA>	37.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTAGGGCGAACGGCTGGATGGATGGAGGGATGGATGGATGGGTGGATGGGAGGAAGGATGGATGGGTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGAGAGATGGATGGATGGATGGATGGACAGAAGGATGGATGGGTGGGGAGATGGATGGATGGATGGATGGATGGATGGATGGATAGAGAGAAGGATGGATGGTTGGGACAATGGATGGATGGATGGAGGGATCGATAGATGGATGGATGGATGGACAGTCGGAAGGATGGGTGGGGAGGCGG;SVTYPE=TRA;CHR2=20;END=62123799;SVLEN=0	GT	./.	E5024	contig1	size285	2	cov1.06	208	3	1.33333333333333	0	0	75	0	0	0	0	269	14	33.3571428571429	8	50.125	77	6	21.6666666666667	1	60	9	0	21	1
14	89791698	N	.	<INV>	7	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCAACCCCAACAACACCATAACCACCCCAAACACCACCATCACCCCCAACACCACCACCACGACCACCACCAACACCACCACCACTACCCCCCCCACCACCATCATCACTCCCAACAACACCATCACTACCTCCACCACCACCACCATCATCGCTCCCAACAACACCATCACTACCTCCCCCATCACCATCATCAATCCCAACAACACCATCACTACCTCCACCATCATCACCATCATCACTCCCAACAACACCATCATTACCTCCACCACCACCACCATCACCCCCCCCAACACCACCACCACCTCCCCCACCACCACCATCATCACTCCCAACAACACCACCCCGGACCCCCGCAGCACCAGCAACGCGAGCACCACCCG;SVTYPE=INV;CHR2=14;END=100394454;SVLEN=10602757	GT	./.	E623376	contig2	size382	3	cov1.19	288	3	58.6666666666667	3	58.6666666666667	107	1	12	0	0	1779	6	2.66666666666667	0	0	1113	5	16.4	2	38	3	0	4	0
14	104435133	N	.	<TRA>	30	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAAAGTAGCTTGGCCGGGGGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACCAGGTCAGGAGATTGAGACCATCTTGGCTAACACGATGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCCGGAGAATGGCGT;SVTYPE=TRA;CHR2=2;END=215469212;SVLEN=0	GT	./.	E391799	contig1	size243	2	cov1.24	48	50	46.34	43	51.7441860465116	13	17	45.5294117647059	15	50.6	103	1	0	0	0	41	0	0	0	0	7	0	5	0
14	106056502	N	.	<DUP>	30	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGCTTAGTCCAGCTCAGCCCAGGTCAACCCAGCCCAGGCCAGCTCAGTACAGCTCAGCCCAGCCCAGGCCAGCTTAGTACAGCTCAGCCCAGCCCAGCTCAGCCTGGCCCAGCCCAGCTCAGTACAGCTCAGCTCAGCTCAGCCCAGCCCAGCCCAGCCCAGCCCAGCGCACCGCAGCGCAGCGCAGCCGAGCCCAGTCCAGCTCAGGCCAGCCCAGCCCAGCCCAGGCCAGCCCAGCCCAGAGCGCGGCAGAGCGGCGCGGAGGAACAGAGCGCAGATC;SVTYPE=DUP;CHR2=14;END=106176078;SVLEN=119576	GT	./.	E2988318	contig4	size281	2	cov1.07	101	4	34	2	50	30	0	0	0	0	104	4	36.5	2	59	60	0	0	0	0	13	1	10	0
15	20310356	N	.	<INV>	2	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCCCCCGAACCCCGCCACCCCACCAAGCCGCCGCAGCCCCCAACCCCAGCCAGCCAGCCATGCCAGCCACGCCAGCCAGCCAGCCAAGGCACCCACACCACCCAGCCAGCCAAGCCAGCAAAGCCAGCCAGCCAGCCAAGCCAGCCAAGCCAGCCAAGCCAGCCAAGCCACCCAGCCAGCCAAGCCACCCAACCCTCCCAGCCAAAGCCCCCACGCGATCCACGCAAGCCCAGCCAGCCAGCCAGCCATGCCAGCCACGCCAGCCAGCCAGCCAAGCCAGCCGAGCCAGTCAAGCTAGCCAGCCACCCAAGCCAGCCCAGCCAGTCAAGCTAGCCAGCCACCCAGCCAGCCAAGCCAGTAAAGCCAGCCAGCCAGCCAAGCCAGCCAAGCCCGCCAAGCCAGCCACCCAG;SVTYPE=INV;CHR2=15;END=20546261;SVLEN=235906	GT	./.	E132848	contig2	size413	3	cov1.10	518	0	0	0	0	185	2	6.5	0	0	1401	50	29.12	26	49.3846153846154	385	13	38.7692307692308	10	49.1	7	0	6	0
15	20310484	N	.	<INV>	2	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCCCCCGAACCCCGCCACCCCACCAAGCCGCCGCAGCCCCCAACCCCAGCCAGCCAGCCATGCCAGCCACGCCAGCCAGCCAGCCAAGGCACCCACACCACCCAGCCAGCCAAGCCAGCAAAGCCAGCCAGCCAGCCAAGCCAGCCAAGCCAGCCAAGCCAGCCAAGCCACCCAGCCAGCCAAGCCACCCAACCCTCCCAGCCAAAGCCCCCACGCGATCCACGCAAGCCCAGCCAGCCAGCCAGCCATGCCAGCCACGCCAGCCAGCCAGCCAAGCCAGCCGAGCCAGTCAAGCTAGCCAGCCACCCAAGCCAGCCCAGCCAGTCAAGCTAGCCAGCCACCCAGCCAGCCAAGCCAGTAAAGCCAGCCAGCCAGCCAAGCCAGCCAAGCCCGCCAAGCCAGCCACCCAG;SVTYPE=INV;CHR2=15;END=20546261;SVLEN=235778	GT	./.	E132848	contig2	size413	3	cov1.10	364	4	18.5	1	45	129	1	59	1	59	1401	50	29.12	26	49.3846153846154	385	13	38.7692307692308	10	49.1	9	0	6	0
15	20311029	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCTGGGGTGGCGTGGCTGGCTGGCTGGCTTGGCTGGATGGGTGGCTTGGCTGGGTTGGCGGGCTGGCTGGCTTGGCTGGCTTGGCTGGCTTGGATGGCTGGCTGGCTTGGCTTGCTTGGCTGTCTGGGTGGCTTGGCTGGCTGGCTGGCTGGCTTGGCTGGCTGGGTGGCTTGGTTGGCTTGGGTGGCTGGCCGTGTTTGCTGGCGGGGGGGGTTGGCTGGCGTTGCGGACTGGGCAGCGGGCAGGCGCCGGTGTGTGAGTGTGTGGGCTGGTCGCGGAGAGTG;SVTYPE=DEL;CHR2=15;END=21314038;SVLEN=-1003009	GT	./.	E434717	contig2	size285	2	cov1.06	222	12	22.5833333333333	6	39.3333333333333	101	2	18	0	0	375	5	0	0	0	134	3	0	0	0	10	0	8	0
15	20942026	N	.	<TRA>	35	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACTAGAGATCAATTCAAAGGACTGGCTTTAGCCTCCAGCTACTGAACAGCTTTGGTTAATAAGAAGCACCTGCAGAAGACTAGAAGACAACAGGAAAGGGGTTGTCTAGTGTTTTTTTCTCTGTGTTGTCTTTTTTTTTTTTTCTTTTTAGAATTCCGTGTAAACAAAATCACGCAGTATTTAGCCTTTTTGTTTTAATTTTTGTTTGTTTAATAGAAATGGG;SVTYPE=TRA;CHR2=6;END=65298377;SVLEN=0	GT	./.	E4105744	contig5	size224	7	cov4.72	277	0	0	0	0	82	0	0	0	0	151	28	43.9642857142857	20	60	45	0	0	0	0	51	0	56	0
15	21356394	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTTGAACCTGCACTGGCCTGACCTTGGCTCTGGCCCTGCTCTGCCTTGTTCCTGGCCCTGACCCAGACCCAGACCCTTTCCTGGCTCTGCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAA;SVTYPE=TRA;CHR2=2;END=90288288;SVLEN=0	GT	./.	E1984676	contig1	size214	2	cov1.41	44	0	0	0	0	6	0	0	0	0	114	0	0	0	0	44	0	0	0	0	7	0	4	0
15	22827082	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGACCCCCCCCCCCTCTGGCCACGTGACGCTTACGCAGTCCCCCCCAGCTCCTCATGACACGGCGGGCTCCGAGGTCTACACTCTCCCCCAGCACCTCGCGCCAGGGGGGGTTATGATGGCCCCACAGCACCTCTGGCCAGGTGGGATTATGACTCCCCCAGCACCTCTGGCCAGCTGGGGTTATGATACCCCCCCACAGCCCCTCTCCCGCTGGGAGGATATGTTGTCCCCCCACCCCCCCGGGCCCGGGGCGGCTATGGG;SVTYPE=DEL;CHR2=15;END=22832636;SVLEN=-5554	GT	./.	E2696055	contig1	size262	2	cov1.15	190	2	30	1	60	46	1	46	1	46	168	17	44.3529411764706	13	52	57	1	38	1	38	6	0	5	0
15	23685607	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATATGCATTTGTTTGGACGCGGGACGGAAGCACTGGTTTGGTGGAATGAGGAGGGGGCATTCAGCCCCTAAAGTGGACCTTGGAGTAGGGGACCCTGAGAGTGGAGCTTCCTGCTCCCACATCTTCTCCTCCTGCTCCTGCATCTTCTCTTCCTGCTCCTGCATCTTCTCCTCCTGCTCCCGCATCATCTCCTCCTCCTCCCGCATCTTCTTCTCCCGCTCCCGCATCCTCTCCTCCTCTCGCATCTTCTCCTCCTGGTCCCATGTCTTCTTCTCCTGCTCCTGCGTCTTCTTCTCCTCCCGCATCTTCTCCACCTGCTGCCACATCTTCTTCTGCTCCCGCATTCTCTCCTCCTTCTCCCGCAGCCTCTCGTCCTGCTCCCACATCCTCTCCTCCTGGTCCCACATCTTCTGCTCCTGATCCCGCATCTTCTCCTCCTGCTCCCACATCTGCTTCTCCTGCTCCTGCAGCCTCTCCTCCTGTCTCCACATCTTCCTGCTCCCGCATCTTCTCCTGCCGCCACATCTTCTTCTCCTGCCC;SVTYPE=TRA;CHR2=20;END=37274467;SVLEN=0	GT	./.	E2267574	contig3	size542	14	cov3.90	214	22	23.7272727272727	10	38.9	65	0	0	0	0	134	19	39.1578947368421	13	49.6153846153846	41	0	0	0	0	23	0	57	0
15	23706879	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGGGAGGAGGAGGGGAAGATGCAGGAGGAGGAAGAGAAGATGCAGGAGCAGGAGGAGAAGATGTGGGAGCAGGAAGCTCCACTCTCAGGGTCCCCTACTCCAAGGTCCACTTTAGGGGCTGAATGCCCCCTCCTCATTCCACCAAACCAGTGCTTCCGTCCCGTGTCCAAACAAATGCATATTTCCAAGCCCTGTGGGACGCTGGGCCAGGGAAGAGGCCACGATGACCCTGGAGAGGGCTCTGCCTCTCGCCCCCAGAAGTCCTATCCCCCTGCCACTAGTTCAATATGAATCTGTACCAACTAAAAGCAATATTTTAGTCAATATTTCCTGAGGTGAATTGATTTATATTGTTTTCTTCTATTAAAAAAAAAACACATTCCCATGTGTTTCCTTTTCCTTCATGGTTTTGAAAATATGGAATCAAGTTTTCTTTTTTTTTCTTTTTTTTTGAGACGGAGTCTCACTCT;SVTYPE=TRA;CHR2=20;END=37274668;SVLEN=0	GT	./.	E2267574	contig1	size471	19	cov6.09	174	35	52.6857142857143	30	58.9333333333333	49	0	0	0	0	165	25	56.44	24	58.2083333333333	43	0	0	0	0	22	1	57	0
15	23717166	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCTCCATGTTGGTAAGGCTGGTCTCAATATCCTGACCTCAGGTTATCCGCTCTCTTCGGCCTCCCGGGGTGCTGGGATCGCAGGCGTGAGCCACCGCGCTCAGGCCAATTTATTAATCAGACAGGAATAGGTCGGCCTGGTGTTTTACATACATCAGTTAGCTCAAGTTCACTGATGATGTTGGTCAAACTTTCCAAGGCTTGCTGAGTTTTAGAAATTATTCAATCATTTGCTTACAGGGACACCTAGTGGTTCAAAATACTACTAAGTTAACCCAAGTTATTACACACTGGATATTCAATGAAGATCAATTAGTTTGGTTATTGGTGAATGATTTTTCTCCCTTTTGAAAAATAATAGCCACAAATATTTTGATGAGGAAAGGGGACAGAAAATGCACTAGGACATATTTTACAAGTATTTTAACCTCTTATTTTAACAAAAATCTCCCAGGAGGCACAATATGGATTAATTCTGTTGATTCTTACTCTGTGGCCTTTCCAGTGCAAGATTGCGCCACTACACTGCACTCTAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAGAAAAAAAGAATGAACAATTAAAGTTACTTAATAATATGGATGTGGAAGTCACCTGTTGGCCAGATAATATACCAGAGAAGTATATTATCAGACCTCTTTCTCAAACATCTTTGTCACCAATTTTTCAACAATTTTCCTTCCAAGTCCCTGAATATCCTGCCAAACCATTGGCAGCAGCCCATGAATCAGTATATAATTGCATGTCTGGCCATTTTTCCTTCCAAGAAAGTGCACAACTAGGTGCACTGTCTAAAGGTCTGCTGACTAGGCAGATTTCTCTTCACCATTGTCCTCCAGAGATGTCCCAAACAGAGGCTGTAGTGTTGCAAATGCCCACCATTGTGTAGTGCCTGCATAGTATGCAAAACCATCTGTAGACAGATCCTAGCTTTTAATTTCTCTGTTGACTGGTCATAGGAAGTTCCCTTAAGACCATGCATTCAGTGGGGAAAGAGAAGGCCGTTTAGTAGGAGTGGAGACCATGGCATTTTGACCACTTTTTCATTTAACTTATTTGTGCCTTGGGGCCTGTTCTGGCTCAATCATATATAAACCCCTTGCATTTCATAATGTTGCTGCTGTCTACCTGAAATTTCTGGCCAGGTGGGTCAGATGACACATAGTTCACCATGGGTAGCTGAGGTTGCATGGTAAGTGTTCTGCTAACACCCAACTGCAGACCAATAACTGTTTCTCAAAAAAAGAACAGTTATCTGAGGAGAATGATAGAACTTT;SVTYPE=TRA;CHR2=6;END=138774059;SVLEN=0	GT	./.	E2801615	contig1	size1304	75	cov8.68	200	27	59.1111111111111	27	59.1111111111111	44	0	0	0	0	126	16	58.625	16	58.625	42	0	0	0	0	11	0	47	0
15	23831661	N	.	<INV>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAATTTACATTCCCACCAACTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCCGCTCACTGCAAGCTCCGCCTCCCGGATTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACTACGCCCGGCTAGTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCATTCCCACCAACTTTATAGGAAGATTCTCTTTTCCCCACATCCTTGCCAGTATTCATTATCGCCTGTCTATTTGAACACAAAGCCATTTTACCTGGGGTAAGATGATATTTCATTGTGATTTTGCTTTGCATTTCTTTCATGATTAGTGATGATGAACATTTTTAAATAACTGTTGCCACGAGAGTACACAGAGCAAAGGAGACAGGGTCATTTATACCCTGATGCGTCCACCCCACTGCTGTGTCCGGTTTCCATTGGCTGGAACAGGACCTCACATTCCATGTTTGTCCTGATTGGCTGGCAACTTAGAACTTTT;SVTYPE=INV;CHR2=15;END=23992703;SVLEN=161041	GT	./.	E460578	contig2	size636	45	cov10.68	258	51	29.3921568627451	20	45.6	46	0	0	0	0	141	49	45.3469387755102	36	52.9722222222222	38	0	0	0	0	66	0	73	0
15	36813690	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACAAAGAGAGAGAAAGAAAGAGAGAAAAAAAGAGGAACGGAGGGAAAGAGAGAAAGAAAGAGAGAGAGAGACAGACACACAGACAGGCAGGCAGGCAAGGAAACAGAGTAAGACAGAAGATAGGAACAGAGAGAGAGAGAGAGAGACAGAGAGACGCAGAAAAAGAAAGAGAGAGGCAGACAGACAGAGAAAGACAGAGACAGACAGAGAGAAACAGGCAGAAAGAGAGAGAGAGAGAGAGACATGGAGGGAGAGAGACAGACAGACAGACAGAGAGGCAGGCAGAGAAAGAGAGTAAGACAGAAGACCGACACAGTGAGAGAGAAAGGCAGAGAGAGAGAGAGAGAGAGAGAGACACAGAGAGAGAGAGAGACAGATAGAAACAAACAGAAAGAGAGAGAGAGACAGAGAAAGAGAGAGAAACAGAGAGACACAGAGAGAGAGAGAGAGAGAGACGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGGGGG;SVTYPE=TRA;CHR2=8;END=14088735;SVLEN=0	GT	./.	E3124325	contig1	size509	4	cov1.19	80	0	0	0	0	48	1	0	0	0	365	1	0	0	0	136	1	0	0	0	3	0	9	0
15	41621292	N	.	<DUP>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATACTAAATATACTATATTTATACCGGTATAATATACTAAATATGCTATATTTATACCGGTATAAATATACTAATATACTATATTATACTGGTATAAATATACTAAATATACTATATTATACCAGTATAAATATAAATATACTAAATATACTATATTTTTATGTATACTAGTATATTTGTACTAGTAAAATTTATTTAAATTGTAATGTTTTATTTTAATCAAATCTTGATAATTTTACTAGTATGATATTATTAAAAATAAATTTATGGCCGGGCATGGTGGCTTGCACCTGTAATCCCAGCATTTGGGAGGCCAAGGCAGGTGTCTCACCTGAGGTCAGGAGTTTGAGACCAGACTGGCCAGCATGGCAAAACCCCATCTATACTAAAAATACAAAATTTAGCCAGGCGTGGCAGGGGGCACCTGTAATCCCAGCTACTCGGCAGGCTGAGGCAGGAGAGGAGAATTGATAGAACCCAGGGAGGCAGACGCTGCAGTGAGCCAAGATCACACCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTAAAAATAATAATAATAATAATAATAATAATAAATATATAGGAGATAAAAAGAACCCGAGTCTGCTGTCTCTAAAATTTATGCTCTTTTAGCTGCATCATTAATCCTCCTCTTAATTCATTCTCTT;SVTYPE=DUP;CHR2=15;END=41628510;SVLEN=7218	GT	./.	E845956	contig2	size681	31	cov6.87	79	64	58.484375	64	58.484375	34	0	0	0	0	113	48	45.5208333333333	39	52.8461538461538	55	0	0	0	0	30	0	32	0
15	53807277	N	.	<TRA>	31.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGAAACTCAACAGCAAGTCAAAGAATCAAGGCTTGCAAATGAAAATATGATATTCCTTTGGGGGATATGCCATATATATATATATATACACACATATATATGTGTATATATATGTTTGTATATATATACACACATATATATGTGTATATATATATACATATATATGTGTGTATATATATACACACATATATGTTTGTATATATATACACACATATATATGTGTATTTATATCCATGTATACGGATAACAATGTATATATATACACTAACATACTCACACATATAA;SVTYPE=TRA;CHR2=10;END=56539174;SVLEN=0	GT	./.	E223801	contig1	size285	2	cov1.06	126	21	39.6666666666667	12	55.6666666666667	35	1	60	1	60	49	0	0	0	0	16	0	0	0	0	0	0	0	0
15	69256821	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGACGTGTGCTCTCCGGACGCCGGCCCGCCCCGGGGGGGAGGGGGGGGGTTCTGTCAAGCAGAAGACGGCCTACGCGATCTGGTCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCGCCGCCCAGTCCGGGAGGGAGGTGGGGGGATCAAGATCGGAAGAGCGTCGTGGAGGGGAAGAGTGTAGATCTCGGTGGTCGCCGTATCAGTAAAAAAAGCGGCCCCGTCCGGGAGGGAGGGGGGGGGGTCAAGATCGGAAGAGCGTCGGGGA;SVTYPE=TRA;CHR2=14;END=20974753;SVLEN=0	GT	./.	E1453865	contig1	size270	2	cov1.12	285	7	5.71428571428571	0	0	118	2	9	0	0	63	0	0	0	0	31	4	11	1	40	4	0	3	0
15	71491784	N	.	<TRA>	8	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCACACACACAACAAACAGAGCAACCACCCACAACACACACACACCACACACACACCCCCCCCATACACCACACACACACCACACACACACCACATCACACACACATACACCACACAGACCCACATACATACCACACACATACACACCACACGCACACAACACACACACACCACACACACACCCCCCCCCAAACACACCACCCACACCACACCCACACCACACACACAACCCAACACACCACACACACACACCCCACACACAACACCCGCAGACCACACCC;SVTYPE=TRA;CHR2=22;END=48205682;SVLEN=0	GT	./.	E351007	contig1	size281	2	cov1.07	159	2	22.5	1	43	70	0	0	0	0	265	4	54.25	4	54.25	87	2	55	2	55	13	1	15	1
15	72501803	N	.	<TRA>	30.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGAAACATACAGTAAAACCTACTTTGTGTGAGGGAAGCTAATACAGGCAAACGATATATATGTGTGTGTGTGTGTGTATACACATATATGTATATATACACATATGTGTATATATACATATATGTATATATACATATATATATATATATACATATATATATATATATATAAGATCGGAAGAGCATCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAGAAGCTGAGGCAGGAGAATCGCATGAACCCGGCAGCCAGAGGTTGCGGTTA;SVTYPE=TRA;CHR2=9;END=129993330;SVLEN=0	GT	./.	E4425419	contig1	size286	2	cov1.06	31	0	0	0	0	25	0	0	0	0	65	13	53.1538461538462	12	57.3333333333333	25	1	40	1	40	2	0	0	0
15	78135274	N	.	<TRA>	9.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCAGTTACTTGGGAGGCCGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGGTTACAGTGAGCCAATAGCGTGCCATTGCACTCCAGACTGGGCAACAAGAGTGACACTAAGTCTAAAAAATAAAATTAAAATTAAAAAAGAAAGTTATAAGGGGCTTACATTTTATAACTCAACAAGAAAAGCCAAAGTATCTATCCCTTTCAGAAAATAAACATGTAATTTAATTATGTTCATAACAAATCATTTAGTAAACAATC;SVTYPE=TRA;CHR2=4;END=32493334;SVLEN=0	GT	./.	E3251266	contig1	size261	2	cov1.16	459	110	0.245454545454545	0	0	157	27	0.407407407407407	0	0	118	31	0	0	0	59	8	0	0	0	25	1	7	0
15	84810725	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGGCCAGCCTCGGACATCCGCGTGTTCGCCAGCAACTGCTCGATGCACGGGCTGGGCCACGTCTTCGGGCCAGGCAGCCTGAGCCTGCGCCGGGGGATGTGGGCAGCGGCCGTGGTCCTGTCAGTGGCCACCTTCCTCTACCAGGTGGCTGAGAGGGTGCGCTACTACAGGGAGTTCCACCACCAGACTGCCCTGGATGAGCGAGAAAGCCACCGGCTCATCTTCCCGGCTGTCACCCTGTGCAACATCAACCCACTGCGCCGCTCGCGCCTAACGCCCAACGACCTGCACTGGGCTGGGTCTGCGCTGCTGGGCCTGGATCCCGCAGAGCACGCCGCCTTCCTGCGCGCCCTGGGCCGGCCCCCTGCACCGCCCGGCTTCATGCCCAGTCCCACCTTTGACATGGCGCAACTCTATGCCCGTGCTGGGCACTCCCTGGATGACATGCTGCTGGACTGTCGCTTCCGTGGCCAACCTTGTGGGCCTGAGAACTTCACCACGGTGAGCTGACCTCCCTACCTATCCTGCCAGGGACCCAGAGAGCCGACCAGTCCCTGCCCAGCACCCACAATTCCCTAGCCAGCACAGGCTCCCCCAAAGCCAGGGGACCTCTTCCTTCCTACCAGCCATGGACTCCCCACCCCCCAGTGCCGATAAGACCTTTTCCTGCATTGACATAGCCTCTCCCTAATTGTACCTGTTTTTGGAGTTGGGATTTGGAGGTGGAGGGATGTGAGAGAGGGAGGAAGGAATATAAGGTGTCTTTTATAAGCCTTCCTTTCTCAGGATCCAAAGTTTTTTAAAAAGAAAAGAAAACAGGTTTTTTTTAAAATATGCAGTGAACTATTTTTTTCCTCTGAAAAATGAAACCTTTATTGGCTTAATTTTGTACCCTAATCATTTACTCCCATTTATTTTGTGCTTACTGTTTGGTTCTATATTGATCACTAGGTTAGGTTTCTCATACTGGGTGCTTAGTCTTCCAAATTATTTATAGGTGCTTCACAGTTGATCGCAAACTAGTAAATAAGGCATCCTCTGGTAGGAGAAGCAGCACTGGATTTTACCAGTGGGAGCTCTGGCAAGTTGGCCACTTTGTGGGAATTTCCAGACCTGAATCTGCATCTGTGTAGAAGGAAGTTGAGGTAGATGAATCTCTATGGCCTTCCTTTCTCTCCTAGTTGGTTTTCCAAGATCCTTCCTCACCTTTTCCACTGCCCATGTCTTGGGTTTTCCTGTATTTCTTAGTTACGTTGCTGTTTTCAGTACCCTCTGTGCCCTCTTCTCTATCTGTGGATTGCTT;SVTYPE=TRA;CHR2=7;END=150746657;SVLEN=0	GT	./.	E1736138	contig1	size1304	89	cov10.31	72	61	42.1639344262295	46	51.1739130434783	38	0	0	0	0	122	59	54.8474576271186	57	55.9122807017544	39	0	0	0	0	108	0	116	0
15	90312008	N	.	<TRA>	32.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCACCAGCCTCCCTAAGCTGGGATTTGTCCCCATCCCTCATGAACAGTGGCCTCCAGTTCTCACCACTTACTTTAGGTAGGGCCCATCCTGTCTGGAGAATAAGGAACCATCACCATCACTCCTCAGTTGAAGACCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTCTTGTGCCCCCCCTGGGGTGGTGGGTGGGCGGTCGCC;SVTYPE=TRA;CHR2=6;END=7473810;SVLEN=0	GT	./.	E957186	contig1	size244	4	cov2.48	142	47	58.2765957446809	45	59.6666666666667	31	14	50.7857142857143	12	56.75	132	0	0	0	0	47	0	0	0	0	5	0	4	0
15	94595141	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACACATATACATACACACCATACACACACATATATACACACTACACACACACCACACACACATACACATATACATACACATCACACATATATACACACTACACACACACACCACACCACACATACATACACATATACATACACACCACACACACATACACATACACACCACACACAAACATACACACCACACACACATACACATACACACCACACACATACATACACACCACACACACACACACACACACA;SVTYPE=TRA;CHR2=19;END=11575904;SVLEN=0	GT	./.	E2036269	contig1	size252	2	cov1.20	328	9	0.666666666666667	0	0	96	1	0	0	0	262	1	60	1	60	113	0	0	0	0	9	0	11	0
15	94595182	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACACATATACATACACACCATACACACACATATATACACACTACACACACACCACACACACATACACATATACATACACATCACACATATATACACACTACACACACACACCACACCACACATACATACACATATACATACACACCACACACACATACACATACACACCACACACAAACATACACACCACACACACATACACATACACACCACACACATACATACACACCACACACACACACACACACACA;SVTYPE=TRA;CHR2=19;END=11575904;SVLEN=0	GT	./.	E2036269	contig1	size252	2	cov1.20	394	13	32	7	57	117	2	60	2	60	262	1	60	1	60	113	0	0	0	0	9	0	11	0
16	4635313	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCAGGTTTGATGGCTCTTGTAATCCCAGCACTTTGGGAGGCTGATGGGGGAGGATCCTTTGAGCCTAGGAGTTCCAGATCAGCCTGAGGCAACATAGTGAGACCCCTGTCTCTACAAAAAAAAAAAAAAAAAAAAAAATCCAGGGAGGGGGCCAAAGACAAACACTGGCAACCCATAATTCTGTATCCTGAAATATATTAGGAAAAAAAGACAAAAAAAATTTTTAAATAAATTGTTCAAAGTGTATAAAGCTGCAGAAATAAAGAA;SVTYPE=TRA;CHR2=7;END=125021731;SVLEN=0	GT	./.	E2005168	contig1	size267	2	cov1.13	127	18	56.6666666666667	18	56.6666666666667	41	1	60	1	60	109	1	60	1	60	47	1	60	1	60	1	1	0	0
16	7733013	N	.	<TRA>	32	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTACAGAGAACATAAGTAGAAAATAGAATTATATTATTTATCTTATTTTTTTTTAGAATATATAATAACCATCACTTTAAGAGGAGCACTGTTTTTTATATATATATATATATATATATATATATATATACACACACATATATACGTATATATGTGTGTGTATATATATATATATATATATATATATATATAAAAAACAGTGCTCCTCTTAAAGTGATGTTGATTGTATATTCTCCAAAAAATTAGGATAACTAAGATAATTCTATTTCCTCCTTATCTGCTCTGTAGACT;SVTYPE=TRA;CHR2=11;END=97542045;SVLEN=0	GT	./.	E1515434	contig2	size292	3	cov1.55	52	11	42.2727272727273	8	56.75	19	4	46.5	3	60	43	1	0	0	0	28	1	60	1	60	4	0	5	0
16	7733110	N	.	<TRA>	23	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTACAGAGAACATAAGTAGAAAATAGAATTATATTATTTATCTTATTTTTTTTTAGAATATATAATAACCATCACTTTAAGAGGAGCACTGTTTTTTATATATATATATATATATATATATATATATATACACACACATATATACGTATATATGTGTGTGTATATATATATATATATATATATATATATATAAAAAACAGTGCTCCTCTTAAAGTGATGTTGATTGTATATTCTCCAAAAAATTAGGATAACTAAGATAATTCTATTTCCTCCTTATCTGCTCTGTAGACT;SVTYPE=TRA;CHR2=11;END=97542045;SVLEN=0	GT	./.	E1515434	contig2	size292	3	cov1.55	59	0	0	0	0	22	0	0	0	0	43	1	0	0	0	28	1	60	1	60	4	0	5	0
16	15488839	N	.	<INV>	30	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGGAGTGCAGTGGGGCGATCTTGGCTCACTTCAAGCTCCACCTCCTGGGTTCAGGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCAGTAGCTGAGACTATCAGTGCGCACCACCAAGCCTGAGTAATTACAATACTTTTTTCTTTTTCCTTTT;SVTYPE=INV;CHR2=16;END=28636073;SVLEN=13147235	GT	./.	E3180573	contig1	size154	2	cov1.96	116	2	30	1	60	31	0	0	0	0	104	3	0	0	0	50	1	0	0	0	4	0	3	0
16	19444258	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCACATATAACATCCATCTTTCTATCTATCTATCATCTATCTACCCATCTGTCTATTTATCTGTCTATCTAATCTATGTGTGTTTTTGTATGTGTGTTCTATGAATGTGTATATATAATGTATATTATATGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAGTATTTTTCTTTTCTTTTTTTCAGCTTTTTTCCCCACTATTTGAAAGTGACAGAATTGTTTTTTACAATGTGCTTTGTTGTGTCTTTCA;SVTYPE=TRA;CHR2=7;END=42590329;SVLEN=0	GT	./.	E2228536	contig1	size254	2	cov1.19	125	17	48.2352941176471	16	49.5625	46	1	60	1	60	196	1	60	1	60	65	0	0	0	0	1	0	0	0
16	20754044	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTTATTGAAAAACAACAGACAATGGCAAAAACAAATTGACCTTTTTGTGTTCCTTTGTGCATGGACGAATGGCTGACTCTGGAGCCCAGGCTGTTGCTTCTCGGTCTGGTGATCAATCTTCCATAGTCTATCTATATATATATATATATATACATATGTATACACATTTTTTTCCTTCTCCCCTTTCCCATTGTAATTTTCTTGTTGTATCAATTGTCTTATTTTATCATCATTTGCTTATTATATCTTCATTTCCATTTATGTGGGTTAGAG;SVTYPE=TRA;CHR2=4;END=190930067;SVLEN=0	GT	./.	E2870377	contig1	size274	2	cov1.10	346	32	0	0	0	118	9	0	0	0	356	86	1.30232558139535	0	0	93	24	0.375	0	0	15	1	6	0
16	32295379	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCACTTCATCATTTCGTTTCATCATTTCATTTCCTCATTTCATCATTTCATTTCATCCTTTCATTTCATCTCATCATTTCATCCTTTCATTTCATTCTTTCATTTCATTATTTCATCTCATCATTTCATCTCATCATTTCATTTCATCATTTCATCTTTTCATGTCATTTCATCATTTCATCTTTTCATTTCATTCTTTTCATCATTGTATTTCATTATTTCATTTCATTTCATGTTTTCATTTCATCTGTTCTGAAGAGCGTCGTGTAGGGTAAGTGTGTTT;SVTYPE=INV;CHR2=16;END=32657512;SVLEN=362132	GT	./.	E3875224	contig2	size283	2	cov1.07	157	2	45.5	2	45.5	53	0	0	0	0	229	1	43	1	43	89	2	24.5	1	40	9	0	9	0
16	32295510	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCACTTCATCATTTCGTTTCATCATTTCATTTCCTCATTTCATCATTTCATTTCATCCTTTCATTTCATCTCATCATTTCATCCTTTCATTTCATTCTTTCATTTCATTATTTCATCTCATCATTTCATCTCATCATTTCATTTCATCATTTCATCTTTTCATGTCATTTCATCATTTCATCTTTTCATTTCATTCTTTTCATCATTGTATTTCATTATTTCATTTCATTTCATGTTTTCATTTCATCTGTTCTGAAGAGCGTCGTGTAGGGTAAGTGTGTTT;SVTYPE=INV;CHR2=16;END=32657512;SVLEN=362001	GT	./.	E3875224	contig2	size283	2	cov1.07	163	0	0	0	0	51	0	0	0	0	229	1	43	1	43	89	2	24.5	1	40	9	0	8	0
16	32344157	N	.	<DEL>	3	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTCTCATCTTTTTTAATGATACGGCGACCACCGCGATCTACACTCTCTCCCTACACGACGCTCTTCCGATCTTCATCTCATCTCATCATTTCTTCTCATCATTGCATCTCATCATTCATCTCATCATTTCATCTCATCTCATCATTTCATCTCATCATTGCATCTCATCATTCATCTCATCATTTCATCTCATCTCATCATTTCCATTTCCATTGAGTTATTTTCTTAACTCCTTTCATTATCTCATCTCGTTTACCTTCTTCTCCTTTCATTATTTCA;SVTYPE=DEL;CHR2=16;END=33342312;SVLEN=-998155	GT	./.	E1008005	contig1	size281	2	cov1.07	240	0	0	0	0	94	1	35	1	35	177	0	0	0	0	68	0	0	0	0	4	0	3	0
16	33873030	N	.	<INV>	2.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGATTCCCTTCGAGTCCATTTGATGATTCCATTCGATTCCATTCGATAATGATTACATCCGAGTCCATTAGATGATTCCATTTGAGCCCATTCGATCATTCCATTTGAGTCCAACCAATGATTCCATTCATTTCCATTCAATGATTCCATTCGAGTCCATTTGATCATTCCGGTAGGGTCCATTCGATGTTGATTCCATTGGAGTGCATTAGATGATTCCATTCGAGTCCATTCGATGATTCCATTCGATTCCATTCGATGTTGATTCTGTTCAAAT;SVTYPE=INV;CHR2=16;END=46405309;SVLEN=12532278	GT	./.	E4252900	contig1	size277	2	cov1.09	4151	156	3.03205128205128	5	34.2	1377	50	3.12	0	0	52136	460	10.1521739130435	35	37.8	28167	219	12.3744292237443	21	38.8571428571429	7	0	6	0
16	33876810	N	.	<DEL>	3	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATCATCATCAAACGTAATTGAAAGGAATCATCATTGAACGGAATGGAATGGAATCATTGTTGAACGGAATCAAATGGAATCATGATCGAAGGGAATCGAATGGAATCATCATCGAACTGAATAGAATTTAAACATCTTTGAACAGAATCGAATGGAATTATCATCGAATGGAATCAAATGGAATCATCATCGAACAGAATCGAATGGAATCATCATCGAATGCATCAAATGGAAACATCATCAAATGGAATCATAATCAAATGGAATCGAATGGAATCATCAT;SVTYPE=DEL;CHR2=16;END=33882669;SVLEN=-5859	GT	./.	E1914793	contig1	size283	2	cov1.07	428	1	0	0	0	173	1	60	1	60	323	3	32.6666666666667	1	60	114	0	0	0	0	7	0	3	0
16	33886922	N	.	<INV>	0.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATCATCAATGGAATTGAATGAAATCAAACTCAAATGGATTCCAAAGGAATCATCTTCGAATGGAATCAAATGGAATCATCGAATGCAATGGAATGGAATCATCATTGAAAGTAATCGAAGTGAATCATTGAATGGAATCGAATTGAGTCATCGAATTGAATCGAATGGAATCATCACCGAATGGACTCGAATGGAATCATCATGG;SVTYPE=INV;CHR2=16;END=46438308;SVLEN=12551385	GT	./.	E3761671	contig1	size205	2	cov1.47	497	0	0	0	0	157	0	0	0	0	789	32	5.46875	1	60	367	2	3.5	0	0	12	0	7	0
16	33889009	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGAATCATCGAATGGAATGCAATGGATTAATCCATGGACTCGAATTCAATCACCATCGAATACAATCGAATGGAGTCATCGAATCGACTCAAGTGGAATAATCATTGAATGGAATCGAATGGAATCATCGAGTGGAATCGAATGGAATCATCATCGAATCGACTTGAATGCAACTATGAGCGAATGGAATTGAATGGAATCATCGAATGGACTCGAATGGAATAATTGAATGGACTCAAATAGAATAATCAAATGGACTCAAATGGAATCATCAAATGGAATTGAA;SVTYPE=INV;CHR2=16;END=46438704;SVLEN=12549694	GT	./.	E3829466	contig3	size286	2	cov1.06	508	5	0.2	0	0	168	0	0	0	0	1161	8	34.875	4	60	488	6	45	5	54	6	0	5	0
16	33890183	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTACGTCTTGATGATTCCATTCTATTCCATCCGATGATTCCATTATCTTCTATTTTATGTTGATCCCATTCAATTCCATCTGATGATTCCATTCGATTCCATTTGATGATGATTCCATTCGATTCCATTCAATGATTCCATTCGATTCCATTAGATGATTCCATTCGAGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAATATTTCCATTGGTTCCCTTTCGATGAGGTTTCCTCTCTATTCCGTTCG;SVTYPE=INV;CHR2=16;END=46452525;SVLEN=12562343	GT	./.	E1516540	contig7	size282	2	cov1.07	612	13	5.84615384615385	1	60	232	1	0	0	0	974	42	12.4285714285714	8	46	379	19	17.6315789473684	6	42	3	0	4	0
16	33961440	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATCGTGCCTGTCCTGCGCATCTGCACCGTCCGTGCCGTTCCTGGCACAGCAGCGCGCCCCCCCCCCGCCCGCCACCCTGGGCTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCGTGCCGAGTCGTGACCGGTGCCGACGACCGCGTTTGCGTGGCACGGGGTCGGGCCCGCCTGGGACCGAACCCGGCACCGCCTCGTGGGGCGCCGCCGCCGGCCACTGATCGGCCCGGCGTCCGAGATCGGAAGAGCACACGGCTGAACTC;SVTYPE=TRA;CHR2=21;END=9825703;SVLEN=0	GT	./.	E3168587	contig1	size304	3	cov1.49	2191	9	27.4444444444444	6	34.5	666	1	38	1	38	7917	9	52.3333333333333	8	56.25	2835	1	60	1	60	1484	433	1446	424
16	33998312	N	.	<INV>	2	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTTGTTTATGTGAAGATATTTGCTTTTCCACTATAGGGTGAAACAGGGCTCCAAGTATCAACTTGCAGATTCTGCAAAAAGGAGATTCAAAACAGCTAAATCCAAAGATTACTTCAACTATGTGAGTTGAATGCACACACAAAAAAGAAGTTTCTCAGAATGCCTCTGGGTACGTTGTCTGCGAAGATATACGCTCTTCCACATCAGGCCGCTAAGCGCACCAAATATCCACTTGCAGATTCTAGAAAAAGAGTGTTTCAAAACTGCCCTATCAAAAGAAACGTCCAACACTGTGAGATGAATGCACACATCACAAAGAAGTTTCTCAGACTGCTTCTTTGTAGTTTTTATGTGAAGATATTCCCTTTTCCAAAGAAGGCCACAAAGTACTCCCAATATCCACTTG;SVTYPE=INV;CHR2=16;END=35235916;SVLEN=1237605	GT	./.	E3584653	contig9	size407	5	cov1.86	7759	289	13.3217993079585	65	38.5384615384615	2538	93	11.7204301075269	17	39.7647058823529	224	6	9.5	1	50	91	0	0	0	0	3	0	4	0
16	34187384	N	.	<DUP>	49.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCTATTCAATGATGTTTCCACTTGATTCCATTCGAACATGATTGCCTTTGATTCCATTCAATGATTCCATACGGTTCCATTTGATGATGATTCCATTCGAGTGCATTAGATGATTCCATTCGAGTCCATTCGATGATTCCATTCGATTCCATTCGGTGATGATTCCTTTGGATTCCATTTGATTATTATTTCCTACGAGTGTTTTGTTGAGGTTTTTTTTATAGTCCATTGGTTGTTTCTTCTCTAATCCTTTTGTTGAGTTCTTTTGGTTCCGTCCATCTG;SVTYPE=DUP;CHR2=16;END=46388664;SVLEN=12201280	GT	./.	E2176464	contig9	size283	2	cov1.07	1228	87	17.1149425287356	19	46.9473684210526	401	21	19.8095238095238	3	49.3333333333333	22094	138	27.4420289855072	63	56.4603174603175	11909	65	28.4769230769231	31	57.2258064516129	11	0	8	0
16	34191457	N	.	<INV>	11.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATGATGATTCCATTGATTTCGTTTGATGATTCGATTCCATTCCATTCGATGATGATTCCATTCGAGTCCATTTGATTCCATTCAATTCCATTAGATGATGACTCCGTTCAAGTCCATTCGAAGATTCAATGCAATTTCTTTCGATTAAGATTACATTCGATTCTATTTGATGATTCCATTTGATTCTATTTGATGATGATTCCATTCAAGTCCATTCGATGATTCCATTCAATTCTATTTGATGATGATTCCATTTTTGTCCATTAGATGATTCCATTC;SVTYPE=INV;CHR2=16;END=46431042;SVLEN=12239586	GT	./.	E2700583	contig1	size280	2	cov1.08	1309	5	14.6	1	40	540	0	0	0	0	3711	130	11.5307692307692	6	34.6666666666667	2021	54	12.1481481481481	1	40	6	0	5	0
16	34194310	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATGGCCTCAAATGGAGTCATTGAATGGAATCAAGTAGAATAATAATCAAATAGAATCAAATGGAATAATCAAATGGACTCCAATGGAATCATTGGATGGACTCGAATGAAATCATCGAATGGACTCGAATGGAATCATCATCGAATGGAATGGAATGGAAACATTGAATGGAATCCAATAGAATCATCATCAAATGGAATCGAAAGGAATAATCAAATGGAATAGAATGGAATCATCAAATGGACGCGAATGCAAGCATCACAGAATGGAATTGAAAGGAA;SVTYPE=INV;CHR2=16;END=46433212;SVLEN=12238901	GT	./.	E513834	contig3	size283	2	cov1.07	1555	9	11.5555555555556	2	36	555	4	1.25	0	0	22528	70	2.02857142857143	1	40	12281	95	3.88421052631579	3	40	4	0	4	0
16	34194361	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCAATGGAATCATTGAATAGAATCGAATGTATTCATCATCAAAAGAAATCACATTGAATTATCGAGTGGACTCGAATGGAATCATCATTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAA;SVTYPE=INV;CHR2=16;END=46442258;SVLEN=12247896	GT	./.	E289544	contig1	size213	2	cov1.42	1683	15	11.5333333333333	4	42.5	618	16	5.3125	1	60	893	0	0	0	0	327	1	40	1	40	3	0	4	0
16	34194362	N	.	<INV>	0.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGAATGGAACAATCAAATGGACTCCAATGGAATCATCTAAAGGAATCGAGTGGAATCATCGAATGGACTCGAATGGAGTCATCATGAAATGAAATCGGATGGAATCAAGGAAGGGAAGCAAATGGAATCAGGGAATGGAATCGAATGGAATCATCGAATGGACTCTAATGGAATCTTCGAATGGACTCAAATAGAATCATCATCGAATGGACCCAAAAAGAATTATCAAATGGACACGAATGGAATCATCATTGAATACACTCAAATGGAATTATCAAATGGAC;SVTYPE=INV;CHR2=16;END=46432899;SVLEN=12238536	GT	./.	E3671302	contig1	size284	2	cov1.06	1711	11	4.45454545454545	1	46	636	16	3.875	1	60	22624	34	6.88235294117647	2	40.5	12599	18	2.83333333333333	0	0	3	0	3	0
16	34194401	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCAATGGAATCATTGAATAGAATCGAATGTATTCATCATCAAAAGAAATCACATTGAATTATCGAGTGGACTCGAATGGAATCATCATTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAA;SVTYPE=INV;CHR2=16;END=46442258;SVLEN=12247856	GT	./.	E289544	contig1	size213	2	cov1.42	1810	8	18	2	58.5	736	1	0	0	0	893	0	0	0	0	327	1	40	1	40	3	0	4	0
16	34194516	N	.	<INV>	28.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCGTCTCCTTTCAATGATGATTTCATTCGACTACATACGACGATTCCATATGTTTCCATTTGATGATGATTCCATTCGATTGCATTTGACAATGATTCCATTTGATTATATTCAATGATGATTCCCTTACAATCCATTCGATGATGATTCCATTCGAGTCCATGTGATGATTCCATTCGATTCTATTAGATGATACTTTCATTCAAGGCCATTCGATGCTTGCATTCGAGTCCATTCGATAATTCCATTCCAGTCCATTTCATGATTCCATGCGATTCCATTCAA;SVTYPE=INV;CHR2=16;END=46442245;SVLEN=12247730	GT	./.	E356290	contig1	size286	2	cov1.06	980	7	38.4285714285714	6	42.6666666666667	450	3	33.6666666666667	2	40	1002	0	0	0	0	378	3	50.6666666666667	3	50.6666666666667	6	0	3	0
16	35223081	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAAGCATTCTGAGAAACATCCTTGTGAGGTGTGCACTGAAGTCACAGAGTTGAAACTGTCTTTTGATTCAGCAGTTTTGAATCTCTCTTTTTGCAGAATCTGTGAGTGGATATTTGGAGCGCTTTGAGGCCTACTGTGGAAAAGCAAATATCGTCACATAAAAACTTCACAGAAGCATTCTGGGAAACTTCTTTGTGATGTCTGCATTCATCTCACACAGTTGAACCTGTCTTATGATTGAGCAGTATTGAAACACTCTATTTGTAGAATATACAAGTGGA;SVTYPE=DUP;CHR2=16;END=35229415;SVLEN=6334	GT	./.	E2013284	contig11	size283	2	cov1.07	134	4	13	1	52	57	0	0	0	0	127	1	2	0	0	43	0	0	0	0	3	0	4	0
16	46397910	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACTCTTTCCCTACACGACGCTCTTCCGATCTCATTGATTCCATCCGATTTCATTGGATGATGACTCCATTCGAGTCCATTCGATGATTCCACTCGATTCCATTAGATGATTCCATTGGGTTCAATTCAATGATGATTACATTGGATTCCGAGATCGGAAGAGCACACGTCTGAACTCCAGTC;SVTYPE=INV;CHR2=16;END=46441162;SVLEN=43253	GT	./.	E983477	contig2	size183	2	cov1.65	2780	9	5.22222222222222	1	40	1679	5	30	4	37.5	285	2	1	0	0	107	1	40	1	40	5	0	13	1
16	46414617	N	.	<INV>	34.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAATCATCATCGAATGGAATGGAATGGAATCATTGAATGGACACTAAAGGAATCATCACCGAATGGAATTGAATGGAATCTTCGAATGGACTCGATTGAAATCATCATCAAATGCAGTCGAATGGAATCATCATCAAATGGAATCGAATGGAATCAACATCAAATGGAATCAAAAGGAATCATTGAATGGAATCAAATGGAATCATCATCGAATGGAATGGAATGGAATCATTGAATGGACACTAAAGGAATCATCACCGAATGGAATTGAATGGAATCTTCGAATGGACTCGATTGAAATCATCATCAAATGCAGTCGAATGGAATCATCAACAAATGGAATCGAGTGGAATCATCGACTGTAGGACTCGATGGTCATCGTTGCGTGGACTCGAATGGAATCAT;SVTYPE=INV;CHR2=16;END=46498966;SVLEN=84348	GT	./.	E1149461	contig2	size405	4	cov1.49	280	7	17.1428571428571	2	41	143	2	0	0	0	1001	116	18.8362068965517	36	49.3611111111111	413	35	24.9142857142857	16	47.4375	5	0	7	0
16	56225668	N	.	<TRA>	1	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGGGGGGGGGGGCGGGGGAGGGGGGGGGGGCGGGGGCGGGGGAGGAGGCGGAGGAGGTGGAGGAGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGAGGAGGCGGCGGAGGAGGAGGAGGAGGCGGCGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGAGGCGGCGGCGGCGGAGGCGGAGACGGCACATCTGAAGTCCAGACACGATGAGATCTCGGAGGCCGAGGTCGGCTTGGCG;SVTYPE=TRA;CHR2=22;END=47775117;SVLEN=0	GT	./.	E3695831	contig8	size280	2	cov1.08	49	0	0	0	0	29	0	0	0	0	490	7	10.8571428571429	1	40	147	0	0	0	0	4	0	5	0
16	56225717	N	.	<TRA>	1	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGGGGGGGGGGGCGGGGGAGGGGGGGGGGGCGGGGGCGGGGGAGGAGGCGGAGGAGGTGGAGGAGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGAGGAGGCGGCGGAGGAGGAGGAGGAGGCGGCGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGAGGCGGCGGCGGCGGAGGCGGAGACGGCACATCTGAAGTCCAGACACGATGAGATCTCGGAGGCCGAGGTCGGCTTGGCG;SVTYPE=TRA;CHR2=22;END=47775117;SVLEN=0	GT	./.	E3695831	contig8	size280	2	cov1.08	71	0	0	0	0	42	0	0	0	0	490	7	10.8571428571429	1	40	147	0	0	0	0	4	0	5	0
16	58624496	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGACCTATAGAAATCTCTGACCCAGCGTAGCAGAAGGTCGAACGCAGCATACATGCTACCTTCGCCCTCCTATATGAATGAGTGAGAGAGACCTGTCCTCCAAAAAAAAAAAAATAGAACAGAGTCTGGGTGCAGTGGCTTACACCTCCAGGCCTCCAGGCCCGGGACAGAGACCACCATGGGTCTCACCCCGCGCTCTACCCTCCGCTTCCTGGAGCCTTCTCGCTGGCCTCTCATCTTCAGAGCGCGAAGCCTCCGAG;SVTYPE=DEL;CHR2=16;END=58663331;SVLEN=-38835	GT	./.	E2584078	contig4	size261	2	cov1.16	64	1	60	1	60	38	0	0	0	0	0	50	58.92	50	58.92	40	0	0	0	0	40	0	38	0
16	58624541	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTCGGACTACAAAAAAAAAAAAAAATAGAACAGAGTCTGGGTGCAGTGGCTTACCCCTCCAGGCCTCCAGGCCCGGGACAGAGACCACCATGGGTCTCACCCCGCGCTCTACCCTCCGCTTCCTGGAGCCTTCTCGCTGGCCTCTCATCTTCAGAGCGCGAAGCCTCCGAGAGCCGTGTGGAGAAGAGTCCGCCCTCTCCCGCCTCGTCCCACTTCCCCGTCCCGGCTGCCTCTCACTCCCTAGAGCTCCGGGAAACGCTTCCAGTGGCCCCAGGTCCACCCCTGTTCCTCCTCCCACCGGCTCTCGCGTTCCCAAGCTGACACCGCCACCCTACCCTAGCCCCTGACGCCAACCCGCCTCACCTCAGGCGGCTCCGGCAGCGCTGGACACAGGAAACTCCTGGGTCCCCGACTCCGGCTCTCCTCGACCCCCTCTTCGGTTAACTCCGCTTGTTTCTCTACAAAATGGCGCCGGAGGTCGCGCGCTCACGTCGCGGCCTTTCCCCTCCCCGTTCCCATTTCATCATTCGCTGCCCGCCCGAGGAGGGATGGCCCCAGAGCCAGCCAATGGCCGCGCCCCGCCTGTGGCTTCTACCCAATCACCGACAGGTGCCCGCGGATTTAAACCAATCACACTCTATCACTTGCAGAAGTCGAGGAAGAAATCAGGCTCCTGCTAGCAACTACCAATCCGGCCTCCTACTTCGCGGACTTTGGCCAATTGCCGCTCACCAGGCCCAGGGGACCGGAGTCAGAGCCCTCGCGCCTGCGCTCGAGGCGAGGGCCAATAGGG;SVTYPE=DEL;CHR2=16;END=58663331;SVLEN=-38790	GT	./.	E2584078	contig2	size794	16	cov3.04	53	1	60	1	60	46	0	0	0	0	0	50	58.92	50	58.92	40	0	0	0	0	31	0	28	0
16	58624543	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGAGGTTGCAGTGAGCAGAGATTGCACCACTGCACTCCATCCTGGATGAGGGAGTGAGACTCTGTCTCCAAAAAAAAAAATAGAACAGAGTCTGGGTGCAGTGGCTTACACCTCCAGGCCTCCAGGCCCGGGACAGAGACCACCATGGGTCTCACCCCGCGCTCTACCCTCCGCTTCCTGGAGCCTTCTCGCTGGCCTCTCATCTTCAGAGCGCGAAGCCTCCGAGAGCCGTGTGGAGAAGAGTCCGCCCTCTCCCGC;SVTYPE=DEL;CHR2=16;END=58663331;SVLEN=-38788	GT	./.	E2584078	contig3	size258	13	cov7.61	52	0	0	0	0	46	0	0	0	0	0	50	58.92	50	58.92	40	0	0	0	0	31	0	28	0
16	58624545	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCATGATAATAACATGAAAGCTGTCTAAGTTCTTAGCTTATTTCAGTTTCCCTTCTCTTCATTCAGAAAATATGGAAGTTAAGAAAGACCATCTCTACCAAAAAAAATAGCTAGGCATGGTGATATACACCTATAATTTCCAGCTACTTGAGAGGCTGATGTATGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCAGAGATTGCACCACTGCACTCCATCCTGGATGAGGGAGTGAGACTCTGTCTCCAAAAAAAAAAAAATAGAACAGAGTCTGGGTGCAGTGGCTTACACCTCCAGGCCTCCAGGCCCGGGACAGAGACCACCATGGGTCTCACCCCGCGCTCTACCCTCCGCTTCCTGGAGCCTTCTCGCTGGCCTCTCATC;SVTYPE=DEL;CHR2=16;END=58663331;SVLEN=-38786	GT	./.	E2584078	contig6	size394	6	cov2.30	50	39	52.2307692307692	36	54.7777777777778	46	0	0	0	0	0	50	58.92	50	58.92	40	0	0	0	0	30	0	27	0
16	78928639	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACAAATTGATTAATGTGTCGAGGGAGCAAGGTGGTACTTATACCTACCCAGCCTGCTTGTGTGTGTCTCAAGGTGGAGAGAGGCTGTGGAAACAATAGAGAGAATAGCATGGAAGGCCACGTTGCAATTAAACAAGATTGGGTGGCCATGGTGCTCACAGTCTCTCAATCCTTTATGTTGAGGGAGAAATGATAACCAGATCTCATTTTGTGTGCCAACCCGAAAGCCTGACTTGACTGCCTCAAATGTTAAGAAGGACTCTAAAGCCCTATCTGGATTCCAAATTTATGGTTGGTGCAGA;SVTYPE=DEL;CHR2=16;END=79095001;SVLEN=-166362	GT	./.	E3588582	contig4	size302	24	cov12.00	59	30	58.2333333333333	30	58.2333333333333	40	0	0	0	0	40	28	58.9642857142857	28	58.9642857142857	41	0	0	0	0	16	0	20	0
16	85440528	N	.	<DEL>	9	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTCCCCCGGATGATCCTCACTGTTACACTCAGGGCCCCCCGGGATAATCCTCACGGTTCATCTTTTTTTCAAGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCCCCCGGATAATCCTCACTATTACACTCAGGGCCCCCCTGGATAATCCTCACCGTTACACTCAGGCCCCCCGGATAATCCTCACCGTTACCCTTAGGGCCCCCCTGGATACTCCTCACTGTTACTAGCAGGGCCCCCCACCCCGCTTCCCCC;SVTYPE=DEL;CHR2=16;END=85445171;SVLEN=-4643	GT	./.	E3654406	contig12	size285	2	cov1.06	53	0	0	0	0	35	1	0	0	0	133	1	16	0	0	119	0	0	0	0	3	0	3	0
16	89966156	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACAAAATTTTCCAGGCGTAGTGGTGCATGCCTGTAATCCCTGCTTCTTGAGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTAGAGATTGTGGTGAACCGAGATCGCGCCATTGCACTCCAGTCTGGGCAATAAGAGTGAAACTCCGTCTCAAAAAAATTAAAAAAGAAAACCCAATATAATAGTGCAGATAAGAGAGAGAATGCTTTCTTTCTCATAAATAAGGATGTTAG;SVTYPE=TRA;CHR2=19;END=28306585;SVLEN=0	GT	./.	E1589819	contig1	size238	2	cov1.27	65	0	0	0	0	37	0	0	0	0	670	0	0	0	0	232	0	0	0	0	7	0	3	0
16	90053840	N	.	<TRA>	15.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGAGGATGAGGTGGAGGAAGTGGAGGAGGTGGAGGAGGTGGAGAAAGTGGAGGAGGTGGAGGAGGAGGTGGAGGAGGAAGAGGTGGAGGAGGAGGAGGGAGGGGAGGGAGGGGAGGGGGGGGAGGGGGGGGGGGGGGGGGAGGGAGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAGGAGGAGGTGGAGGAGGAGGAAGGGGGTGAGGAGCAGGAGGAGGAGGAGACAACCAGATAGGCATGGGGATGGTTCC;SVTYPE=TRA;CHR2=3;END=150421610;SVLEN=0	GT	./.	E1003330	contig3	size280	2	cov1.08	261	0	0	0	0	109	0	0	0	0	178	0	0	0	0	65	3	47	2	60	6	0	3	0
17	5964324	N	.	<TRA>	30.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACAAAAAACCAAACGCTCAGTCGCTACAAACACCAAAATGTGGCTGGGCCCGGTGGCTTACACCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGTGGATCACTTGACTGGTCAACAGGGTGATATCTCATCTCTACTAAAAATACAAAACTAGCTGGGCGTGGTGGTGCATGCCTGTACTCCCAGCTACTCAGGAGGCTGGGGCGGGAGCATTGCTTGCACCTGGGAGGCGGGGGATGCGGTGAGCCGCGATCCCGCCATTGCACAGCAGTCGGGGCGC;SVTYPE=TRA;CHR2=21;END=40091719;SVLEN=0	GT	./.	E3286814	contig12	size284	2	cov1.06	114	1	60	1	60	35	0	0	0	0	97	12	59.9166666666667	12	59.9166666666667	50	1	60	1	60	0	0	0	0
17	30506307	N	.	<TRA>	30	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGTCTGGGAAGTGAGGAGCACCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGGGGAGCACCTCTACCTGGCCGCCCCGTCTGGGAAATGGGAAGCGCCTCTGCCCGGCCGCCCCGCCTGGGCAGTGTGGAGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCCCCCCGCCCGGGGGGGTGGCGGGGGGGGGGGGGGGGGCGGGCCGCCCTGCCCGGGGGGGGGGTGGGGGGGGGGGCGCCGCGCGGGGCGGGGCGGCC;SVTYPE=TRA;CHR2=5;END=83608291;SVLEN=0	GT	./.	E2441735	contig2	size284	2	cov1.06	113	4	42.75	3	48.6666666666667	32	1	60	1	60	83	2	0	0	0	57	0	0	0	0	3	0	4	0
17	38916114	N	.	<TRA>	32	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAATTATAGTTACAATAATTTGTTAAGGAATACACAATATAAACAGATGCAAATTGTGACATCAGAAACATAAAAAATGGGGGTGGAATAAGAGTATAGAGTCTTTAATGTGGTCAGAATTAAGTTGCTATCAGTTTAAAATAGCCTGTTATAAGTGTATTTTATATAAGCCTCATAGTAACCACAAGCAAAAGCTATATCAAATACAGA;SVTYPE=TRA;CHR2=7;END=146035843;SVLEN=0	GT	./.	E3795251	contig1	size210	3	cov2.16	123	42	1.5952380952381	0	0	47	4	2.5	0	0	182	152	51.7302631578947	133	58.9473684210526	56	28	50.7857142857143	24	59.25	11	0	6	0
17	41384891	N	.	<TRA>	31.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCTCAACCACACACCCACCCCCACACACACACACCCACACACACACACACACACTTTTTTAATGGTACGGCGACCACCGAGATCTACACTCTCTCCCTACACGCCGCTCTTCCGATCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTAAGGTCAAGAGATCAAGACCAGCCAGGCCAACATAGTGAAACCCCGGCTCTACTAAACCCCCCCCCCCTACCACCGGCCCACCGCCCGCCCGCGGCCCGCCC;SVTYPE=TRA;CHR2=15;END=92798033;SVLEN=0	GT	./.	E1829101	contig2	size270	2	cov1.12	99	12	47.4166666666667	11	51	32	1	60	1	60	157	1	60	1	60	55	0	0	0	0	2	0	2	0
17	42598156	N	.	<TRA>	59.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGGTTTCACCATGTTGCTCAGGCTGGTCTCAAACTCCTGGGCTCAAGCAATCTGCCCACCTTGGCCTTCCAAAATGCTAGGATTACAGGCATTAGCCACCACACCAAACCTAGTCTTCTTCTTTTTTTTTTTTTTTTTTAACGGGGTCTCTCTCTTTGTTTCCCCTGCTGGTGGGCAGGGGCGGGATCACTGCAGCCTAGACCTCCTGGGTTCAAGCAATTCTCCCATCTCAGCCTTTCTGGTATCCGGGACCCCAGGCGCGTGA;SVTYPE=TRA;CHR2=9;END=32664763;SVLEN=0	GT	./.	E4342211	contig1	size266	2	cov1.14	123	10	60	10	60	44	1	60	1	60	139	2	60	2	60	35	0	0	0	0	0	0	0	0
17	43442995	N	.	<TRA>	17.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTAGGTACATACACCAAAAAAAGTAAAGTAAAAAAAAAATAACGAAAATAAAAAAAGAAAGAAAGCAAGAAGAAAGAAAGAGAAAGAAAAAAAGGCATAAAGAAAGAAGGAAACAAAGAAAGAAAGGAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAAGAAAGAAGGAATGAATGAAAGAAAAGAAAGCAAGAAAGAAAGAAAGAAAGAAAAAGAAAAGAAAGAAAGAAAAGCAAGCAAGAAAGCACGAAAGCAAGC;SVTYPE=TRA;CHR2=11;END=6153093;SVLEN=0	GT	./.	E332019	contig1	size286	2	cov1.06	129	5	48.8	4	55	48	5	51.6	4	59.25	809	1	60	1	60	268	0	0	0	0	3	0	33	2
17	43443175	N	.	<TRA>	17.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTAGGTACATACACCAAAAAAAGTAAAGTAAAAAAAAAATAACGAAAATAAAAAAAGAAAGAAAGCAAGAAGAAAGAAAGAGAAAGAAAAAAAGGCATAAAGAAAGAAGGAAACAAAGAAAGAAAGGAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAAGAAAGAAGGAATGAATGAAAGAAAAGAAAGCAAGAAAGAAAGAAAGAAAGAAAAAGAAAAGAAAGAAAGAAAAGCAAGCAAGAAAGCACGAAAGCAAGC;SVTYPE=TRA;CHR2=11;END=6153093;SVLEN=0	GT	./.	E332019	contig1	size286	2	cov1.06	121	0	0	0	0	51	0	0	0	0	809	1	60	1	60	268	0	0	0	0	3	0	33	2
17	64794712	N	.	<DUP>	30	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGATGATGGGGTGATGGTGCTAGTGGAGATGATGGGGATGATGGTGATGGTGGTGGTGATAGGGGTGGGATGGTAGTGGTGATGTGGGTGATGGTGATTGTGATGGTGGTGGTGGTGGGGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGATGTGGTAGTGTTGTGGTGGTCGTGGTGGTGGTGATGGTGGTGGTGGTGGTGATGGTAGTAGTGATGGTGGTGGTGGTGGTAGTGGTGGTGGTGATGTGGTAGTGTTGTGGTTGTGCTAGTGGTGGTGGT;SVTYPE=DUP;CHR2=17;END=75480417;SVLEN=10685705	GT	./.	E2656424	contig1	size283	2	cov1.07	3871	22	7.18181818181818	0	0	1357	8	4.25	0	0	117	2	56.5	2	56.5	45	1	60	1	60	10	0	9	0
17	75550263	N	.	<TRA>	31	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGCCCTGGTGGGAGACAGGCTTCCTTTCTCTCAGTTTCCTGGATCCTCTTCAATAAAGAGCCCCCCTCCACGGTTCTGCCCCTTACCAATGTTGTTTCTAGCTCCATCCCATCCTTCTACACCCAGAGTGTTGCTTTTTTTTTTTTTTTTTTTTTGCGGAGGCTCACTCCT;SVTYPE=TRA;CHR2=Y;END=18867343;SVLEN=0	GT	./.	E452454	contig2	size172	2	cov1.76	107	14	57.1428571428571	14	57.1428571428571	36	0	0	0	0	11	1	0	0	0	27	0	0	0	0	0	0	1	0
17	75857719	N	.	<TRA>	49	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGGAGGAAGGAAGGAGAGATGGATGGATGGATGGATGGGTGGATGGATGGATGGGTGGATGGACAGATGAATGGATGGGTGGACGGATAGAAGCAAGGAAGAGCATATGGATGGGTGGATGGACCCTTTGCTCAAGATACTCCCTGGAACTGCAGAGAAAGGGGTTAAGCAAGAGGGTGAGGAAAGACTGGTTCAATACTTCAGGAAGGCTCCACATGAAATTTCCACAGGCACTAAAACCACCCAGCAGCTGTCCAGAGTCCTGGTGTCCCTGCTTACCCTAGTGTCTCTGCCCACACCTTGGAGATGGGAAGTGGAGGCCAACTGGGGAATAGGAGGAACCCAGAAAACCTCAGCAGTC;SVTYPE=TRA;CHR2=5;END=6189669;SVLEN=0	GT	./.	E1805949	contig1	size362	3	cov1.25	108	16	53.5	14	58.5714285714286	33	0	0	0	0	78	4	48.5	4	48.5	45	0	0	0	0	0	0	0	0
18	10691781	N	.	<TRA>	30	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATATATACAATATATATAATATAAAAAAAATATATAAACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATAGAAAGAGAGAGAGAGGATCCATTTGGAATATGTAGGAGAAAGAATTCTGATAGGTGGACTCTCAATTTCTTTTTACTATTCAT;SVTYPE=TRA;CHR2=X;END=6270949;SVLEN=0	GT	./.	E2638067	contig3	size203	4	cov2.98	71	41	36.219512195122	26	54.1153846153846	44	2	60	2	60	57	0	0	0	0	17	0	0	0	0	4	0	5	0
18	12933934	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGATTGTTGTAAATAATAACACGGCTTCTAGCTAGGCACAGTGGTTCATGCCTGTAGTCCCAGAACTTTGGGGGTGCTGAGGCAGGAGGATCGCTTGAGCCCAGGAATTTGAGGCTGCAGTGAGCGATGATTGCATCACTGCACCCACCGCTTCCAGGGCTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGATCACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTCTCGCCGTGTTGGCCAGGCT;SVTYPE=DEL;CHR2=18;END=12934262;SVLEN=-328	GT	./.	E2306109	contig2	size278	5	cov2.72	77	9	47.5555555555556	8	50.625	36	1	60	1	60	79	7	45.2857142857143	5	53	28	0	0	0	0	493	223	513	225
18	23773548	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTGCTGGGATTACAGGCTGAGCCACTGCACCTGGTCTTAATGTTCTTTTTTGAAAACGAGGGGAGAGGTTCAGTTTTTGCAGAGGAATGAAAATAGTAGGGGAAGGCCAGGCGTGAGCCACCGTGCCCGGCCTCCTATGAGAATTGTTACTGCCGCCACTGATCTCACAGGTGACAGAGCTCATGTGGTAATGCTCGCTCCCCCCACCCCCCTACT;SVTYPE=DEL;CHR2=18;END=23774044;SVLEN=-496	GT	./.	E3275785	contig1	size217	6	cov4.18	69	12	60	12	60	28	0	0	0	0	84	12	57.5833333333333	12	57.5833333333333	31	1	60	1	60	496	203	474	188
18	39322354	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTTTTATGTACAGAACTACACCTACTTCTATACAAATATACTTTCTGAAAAGTTTATTACAGTGAATTGATTTTACTATGGGTACAAAAGATAAGGGGAAAAAATGGAGCTTTTGAGGCAGGGGGGGTTTTTTTTTTTTTTTTTTTTTTTTTCCAGATGGAGTCTTGCTCTGTAGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAG;SVTYPE=TRA;CHR2=6;END=38335583;SVLEN=0	GT	./.	E3025065	contig1	size268	2	cov1.13	101	9	55.5555555555556	9	55.5555555555556	38	1	60	1	60	140	14	54.3571428571429	13	56.9230769230769	43	1	60	1	60	1	0	0	0
18	41194050	N	.	<TRA>	15	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATATATATATTATATATCATATATAATATTATATAATATTATATATGATATATATATTATATATATCATATATAATATTATATATATATTTTATATATATAAATATATATATATGATATATATATATATATATATAAAGAAAAACTACAAAACCAATGACATCCAAAATAATTA;SVTYPE=TRA;CHR2=X;END=147277766;SVLEN=0	GT	./.	E109058	contig1	size175	2	cov1.73	2	1	0	0	0	4	0	0	0	0	12	14	43.7142857142857	10	54.6	7	0	0	0	0	9	0	3	0
18	41194138	N	.	<TRA>	15	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATATATATATTATATATCATATATAATATTATATAATATTATATATGATATATATATTATATATATCATATATAATATTATATATATATTTTATATATATAAATATATATATATGATATATATATATATATATATAAAGAAAAACTACAAAACCAATGACATCCAAAATAATTA;SVTYPE=TRA;CHR2=X;END=147277766;SVLEN=0	GT	./.	E109058	contig1	size175	2	cov1.73	15	0	0	0	0	3	0	0	0	0	12	14	43.7142857142857	10	54.6	7	0	0	0	0	9	0	3	0
18	43690291	N	.	<TRA>	10.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGTATGGAGTGAAATGGAACAACCATATCCCCCGGTTCCCTTAACCAGGGGCCAAATAGCCCCCCTCCCCCCCCTCCCGAAGAAAATAGACTACAGGTGTCCCCCCCCCCCACCGGGCAAATTTTTAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGTGGGTTTTTTTTCAAATTTTTAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT;SVTYPE=TRA;CHR2=12;END=120990906;SVLEN=0	GT	./.	E4375009	contig1	size278	2	cov1.09	120	3	0	0	0	39	1	0	0	0	303	7	0	0	0	120	1	0	0	0	4	0	5	0
18	58832629	N	.	<TRA>	54	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACTAATTTGTTTCACATTGAAGTGGTACATGCTGTGTGTTTATGCCATTACTAGAGCCAACACTGAAATATCATTTGATATGTATCTGAAGCCTTCTATCAGGCTCCAAGATAAGAAAGAGGCAGTTTTTTTTTTTTTTTTTTTTTGTGACAGTCTTGCTCTGTCGCCTTGGGTGGAGGTCAGGGGCGTGGTCTCAGCTCACTTCAGTTTCTTCCTCCTGGGTTCAAGCGATTCTCCTTCCCCTGCCTCCCCAGTAGATGGGACTCCGCG;SVTYPE=TRA;CHR2=19;END=3380629;SVLEN=0	GT	./.	E1543586	contig1	size271	2	cov1.11	108	14	57.1428571428571	14	57.1428571428571	28	1	48	1	48	76	8	55.375	8	55.375	34	1	18	0	0	0	0	0	0
18	65084575	N	.	<TRA>	30.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAAAGTAAATCATCACTATCTTCACATAATAGAGCATCGAGGTAATTGAAGAATTTCCCTGGTCTTAGCAATTATGGCATCATTGATTGTATCATTTTGATGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAATTCTTTCTTTCTTTTTTTTTTTTTTTTGTTTTTTTGATGCTTTTTTGTTGCCCA;SVTYPE=TRA;CHR2=10;END=10641678;SVLEN=0	GT	./.	E1586587	contig1	size190	2	cov1.59	125	15	49.7333333333333	12	60	39	1	60	1	60	111	0	0	0	0	46	0	0	0	0	1	0	1	0
18	66379462	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTAAGGTAACTGAACAGGAAACAAAGGTGGTCTTGTAGGGCCTAGACAGTGTGGCCCAAGTCATTGGAACACATAGGAATGGCTAAGCGAAACCCAGAGACATGTCAGCTGCAATCAGCTTTAATGCATTTTTGCCAAAGTAAGGATTGCCTCTTTAAAAACTTTCTCTTGAAACTTGAGAACATGAAGTTAAGCGTAGGATATTTTTTGATGGCTCTTTTCTGATTATTTTGGAACTAGATAAAGTAGTATGAAATATTT;SVTYPE=DEL;CHR2=18;END=66382826;SVLEN=-3364	GT	./.	E1600720	contig1	size262	8	cov4.61	96	15	59.7333333333333	15	59.7333333333333	49	0	0	0	0	88	16	58.875	16	58.875	59	0	0	0	0	9	0	9	0
19	1164457	N	.	<TRA>	15	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGACTGCGCCAGGACAAAGCCTCCCCCGGGCACAGGAACAGGTGCTAGGACACTGTGGGGACGTCCCAGATGCCAGGGGGAGTGGAGACAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAACAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGGGGAGGAGGAGAGAAGGAAGAGGAGGAGGAGGAGGAGAGAGCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGGTGGTCGCCGTAGCAGTAAAAAAG;SVTYPE=TRA;CHR2=7;END=132247702;SVLEN=0	GT	./.	E4010497	contig2	size285	2	cov1.06	169	0	0	0	0	72	1	40	1	40	185	2	17.5	1	35	39	1	60	1	60	4	0	17	0
19	10298694	N	.	<TRA>	30	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTGTGGTCCTAGCTACTCAGGAGACTGAGGCAGGAGGATCACTAGAGCCCAGTGAGCTATAATTGTGCCGCTGCATTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGAT;SVTYPE=TRA;CHR2=3;END=63661065;SVLEN=0	GT	./.	E60231	contig12	size188	2	cov1.61	126	0	0	0	0	49	0	0	0	0	156	2	0	0	0	38	0	0	0	0	12	1	3	0
19	11575904	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACACATATACATACACACCATACACACACATATATACACACTACACACACACCACACACACATACACATATACATACACATCACACATATATACACACTACACACACACACCACACCACACATACATACACATATACATACACACCACACACACATACACATACACACCACACACAAACATACACACCACACACACATACACATACACACCACACACATACATACACACCACACACACACACACACACACA;SVTYPE=TRA;CHR2=15;END=94595141;SVLEN=0	GT	./.	E2036269	contig1	size252	2	cov1.20	262	1	60	1	60	113	0	0	0	0	328	9	0.666666666666667	0	0	96	1	0	0	0	11	0	9	0
19	16112060	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTTCAGAAGTGCTTCAAGGAAGTGATGAAAGCCCTAGGCAGTTTTATGAAAGATTCTGTGAGGCATACTGGCTTTCACCCCGTTTGACCCTGAGGCCACTGAAAATCAGTGTATAATGAATATGTCATTTGTAGGACAGGCCCAAGGTGATATCAAATGAAATCTTCAGAAGTTAGAAAGTTTTGGCCGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACGAGGTCAGCAGTTCAAGATCAGCATGG;SVTYPE=INV;CHR2=19;END=58440078;SVLEN=42328017	GT	./.	E56188	contig1	size276	3	cov1.64	362	47	13.3829787234043	16	38	122	12	19.1666666666667	6	38.3333333333333	82	12	0	0	0	28	2	0	0	0	6	0	6	0
19	17396811	N	.	<TRA>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAGACATGGGTTCAAGATATGTTGTGACTTTAAGGACTGCCTCTGGGGACCACTGTATCCACTTTTCCCTGTCTGAGCTATCCCCTTCATCCAGGGAGACTCAGGACCTGCCAGCCCGAGCCTTCTCACTGACCCCAGCTGAGCGCCTTCAGACTTTCATCCGTGCCATCTTCTACGTGGGCAAAGGGACGAGGGCCCGGCCATATGTCCACCTCTGGGAGGCCCTTGGTCACCATGGGCGGTCAAGAAAACAGGTGTGAGGACAGGGATCAGGGTTCAGCGAGGGCAGTCGGGCCATGGGCAGGGGAGGGTATTGGGGGTGCTGACTCCTGATTCTGCCCTAGCCCCACCAGGCCTGCCCCAAGGTGCGTCAGATCTTGGACATCTGGGCCAGTGGTTGCGGCGTTGTGTCCCTACATTGCTTCCAGCACGTGGTCGCTGTGGAGGCTTATACACGGGAGGCGTGTATTGTGGAAGCCCTAGGTGGGTGCCTGGTACCTAGAATGGGGGTCATATGAAAGGCATTTGGCTTCCCAGTTCCCTCATTTTTTTCCTTCTGAGGGGTGTTCATTTGTTGACTGAGCAATTATTGAGCACCAACTTTGAACCTGCACACGCATGTATTTTGCTCCATTGGTTTATCCCCACTCAAGGGCAATACACATTCAAAGCATAAAAATTACATGACCTATGATATTTATTTTGCTAAGATTTTTCACAAAACCCCATCATAATCAGAGATAAGGTAACTCCTGGAG;SVTYPE=TRA;CHR2=10;END=7059511;SVLEN=0	GT	./.	E978440	contig1	size758	27	cov5.38	113	41	58.5121951219512	41	58.5121951219512	32	0	0	0	0	76	42	59.4047619047619	42	59.4047619047619	50	0	0	0	0	56	0	54	0
19	17397640	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATGCCCGTAAAGTGCTTGTTATTATGGAAATGTTTCATGCGTGACCATCAGCAATGTCAAGACATGAGAGATTATGTTCCCAAGAAGGCGTTATTAGTTTGAGTTTAATTTGGTTTATTGGGCAGTACACTTAAAGCACAGGAGAAGGTGCTTTGGAACAGTCCGGTGCTTCTGTAAGAGGCGTTTGAACCTGGGCAACTCCCCCTGGAATAGGAGCTGGGTAAAATGAGGCTGAAACCTACTGGGCTGCATTCCCAGATGGTTAAAGCATTCTAAGTCACGGGATC;SVTYPE=TRA;CHR2=10;END=7132876;SVLEN=0	GT	./.	E4396089	contig1	size288	22	cov11.53	51	27	59.5555555555556	27	59.5555555555556	42	0	0	0	0	135	27	59.1481481481481	27	59.1481481481481	50	0	0	0	0	62	1	53	0
19	20420783	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTAGTAGAGACGGGGTTTCACCATTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCAACTTTTTGTATTTTTAATAGAGATGGGGTTTCAGCATATTGGTCAGGCCAGTCTTGAACTC;SVTYPE=TRA;CHR2=15;END=93835784;SVLEN=0	GT	./.	E4341469	contig1	size182	2	cov1.66	125	4	0	0	0	38	0	0	0	0	148	5	23.8	2	59.5	48	2	18.5	1	37	4	0	5	0
19	20751038	N	.	<INV>	2	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCACTGGAGGTAGAAAGAGAACACAGCCTTTGAGCAAGCTAAGCAAGCAGTGCATCTGGCCCTGGATGGCCCATATGGGATGGGCCAGTAGAATTGCAAACAACTGTCCTGGATTAACATGCTAATTGGAGCCTTGGGCAGAAACAAGATGGGAAGAGGGGACTCTTGGGGTTTCAAACCCGGAAGCTGCCAGAGGCTGGCGAAGCTTATAATCCTTTTGAGAAGCGACTGTTAGCTTGCTATCGTGCTTTGCTGGAAA;SVTYPE=INV;CHR2=19;END=20956727;SVLEN=205690	GT	./.	E1807511	contig1	size259	2	cov1.17	252	11	10.1818181818182	1	43	63	0	0	0	0	179	0	0	0	0	53	0	0	0	0	4	0	3	0
19	24531112	N	.	<DEL>	3	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATATATACACATGAAAACTAGACAGAAACATTATGAGAAACTGCTCTGTGATGCGGGCATTCATCACCAGAGTTGAACCTTTCTTTTGATTGAACAGTTTTGAAACATTCTTTCTGTAGAATCTGAAGGGGATATTTGGAGCGCTTTGCAGTTTTTGGTGGAAAAGGATATATCTTCACATAAAAAATAAACAGAAGCA;SVTYPE=DEL;CHR2=19;END=27864806;SVLEN=-3333694	GT	./.	E799961	contig1	size201	2	cov1.50	2439	61	12.2622950819672	12	39.5	776	15	11.1333333333333	3	40	1427	331	5.21450151057402	15	48.2	450	89	4.59550561797753	2	44	11	0	11	0
19	24599941	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGATCAATGCACACATCACAAAGAAGTTTCTCAGAATGCTTCTGTATAGTTTTTATCTGAAGTTATTTGCTTTTCCACGATAGGCCTCAAAGCACGCCAAATATCCACTTGCAGATCCTATGAAAAGAGTGTTCCAAAACTGGTCAATCATAAGATAGGTTTAACTCTGTGAGTTGAATGCACAATCACGAGGAAGTTTCTCAGAATGCCTCTGTGTGCTTTTCATTTGAAGGTATT;SVTYPE=INV;CHR2=19;END=27892057;SVLEN=3292115	GT	./.	E1695635	contig1	size238	2	cov1.27	1578	26	14.3461538461538	4	41.25	585	12	12.5833333333333	3	38.6666666666667	576	53	4.75471698113208	1	59	193	16	2.4375	0	0	3	0	6	0
19	27764756	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACACGACGCTCTGCCGATCTTACCTTTTCATAGAACAGCTTTGAAACATACTTTTCGTAGAATCTGCAAGTGGGTGTTTGGACTGCTTGGAGGCCTTCATTGGAAATGGGAATGTCTTCACATATAAGCTAGACAGATTCATTCTCAGAAACTTCTATGAGATGTCTGCTTTCAACTCACAGAGTTGTACCTTTGTTTTGATAGAGCAGTTT;SVTYPE=DEL;CHR2=19;END=27769129;SVLEN=-4373	GT	./.	E3701409	contig1	size213	2	cov1.42	353	19	4.52631578947368	1	60	121	1	0	0	0	1323	71	16.5070422535211	23	38.2608695652174	488	28	13.25	5	38.2	3	0	4	0
19	28306585	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGCCTCCACCACTATGCAGATAGAAAAAAGTCTTAGGAAAGTGACATAACATCCAGAATTACACAGAGATTCCATGGCAAAGCTAGCACTTTAGTTAGGATTACATTTTCCTACATATAGAAGAAAACCCAGACCGGGTGCTGTAGTTCACGCCTGTTATCCCAACACATTGGGAGGTTGAGGCAGACGGATCACCAGAGGTCTGGAGTTTAAGACCAGCCTGACCAACATAGAGAAACCCAGTCTCTACCAAAAATACAAAATTTTCCAGGCGTAGTGGTGCATGCCTGTAATCCCTGCTTCTTGAGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTAGAGATTGTGGTGAACCGAGATCGCGCCATTGCACTCCAGTCTGGGCAATAAGAGTGAAACTCCGTCTCAAAAAAATTAAAAAAGAAAACCCAATATAATAGTGCAGATAAGAGAGAGAATGCTTTCTTTCTCATAAATAAGGATGTTAGAGCTGGGCAGTCTGACTCTGAACTGTACACGAAGGTAGTCAA;SVTYPE=TRA;CHR2=16;END=89966159;SVLEN=0	GT	./.	E3025043	contig1	size536	5	cov1.41	670	0	0	0	0	232	0	0	0	0	62	0	0	0	0	38	0	0	0	0	3	0	6	0
19	32576039	N	.	<TRA>	3	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCATCCACCCATCCACCCATCCATCCCTCCCTCCACCCACCCCCCCATCCATCCATCCATCCACCCATCCACCCACCCACCTATCCATCCGCCTATTCATCCATCCAACCATCTGTTCATCCATTCATCCATCCATCCATCCATCCACCATCCATCCATCCACATCCATCCATTCATACATCCATCATCCTCCCATTCATCCATCCATCCACCATCCATCCATTCATTCATCCATCCATCCATCCATCCATCCCTCCACCCACCCACCATCCATCCACCCC;SVTYPE=TRA;CHR2=9;END=137576903;SVLEN=0	GT	./.	E2029293	contig1	size283	2	cov1.07	183	2	15	0	0	51	1	12	0	0	222	4	49.25	4	49.25	86	2	42	1	60	3	0	4	0
19	32576158	N	.	<TRA>	3	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCATCCACCCATCCACCCATCCATCCCTCCCTCCACCCACCCCCCCATCCATCCATCCATCCACCCATCCACCCACCCACCTATCCATCCGCCTATTCATCCATCCAACCATCTGTTCATCCATTCATCCATCCATCCATCCATCCACCATCCATCCATCCACATCCATCCATTCATACATCCATCATCCTCCCATTCATCCATCCATCCACCATCCATCCATTCATTCATCCATCCATCCATCCATCCATCCCTCCACCCACCCACCATCCATCCACCCC;SVTYPE=TRA;CHR2=9;END=137576903;SVLEN=0	GT	./.	E2029293	contig1	size283	2	cov1.07	129	0	0	0	0	39	0	0	0	0	222	4	49.25	4	49.25	86	2	42	1	60	3	0	4	0
19	33516902	N	.	<TRA>	40.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTTGCGTGTCTATGAAATGTGACTACGCGGAATTACTGAAAATTAACTATAAAATCCAAGGCATCTAACTTTTAAACTTATCTTGGCTCATCACGTATATTTACACTAGATTTTATACTGTGTTCATTTGTTTTTTTTTTTTTTTTTTTTTTTGGACGGAGGCTCCCTCTGTCCCCCCGGCTGGCGTGCAGTGGCATGATCCCGGCTCACTGCAAGCTCCACATCCCCGGTTCCCCCCACCCCCCTGCCTCCGCCCCCCCGGGAGCCGGGGCTCCAGGG;SVTYPE=TRA;CHR2=1;END=232767747;SVLEN=0	GT	./.	E896206	contig2	size280	2	cov1.08	101	4	50	4	50	47	1	60	1	60	140	10	58	10	58	37	1	60	1	60	1	0	1	0
19	39942466	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGTACAGGTGCCCACCACCGTGCTGGGCTAGCTTTTGTATTTTTAGTAAAGACGGGGTTTCACCACATTGGCTAGGCGGGTCTTGTACTCCTGATGTCAGGTGATCCACCCGCTTTGGCCTCCTAAAGTGTTGGGATTACAGGCATGAGCCACTGCACCCGGCCAAGATACCCCTTCTCTGACCGCTCCGGGCTAGGCCCCACCAAGCTCGGATTTTTTTTTTTTTTTTTTTTTTGTACATAATCTTATCCCCGCCTCTAGACGGAAGTAGCGTGCGCATAGCAA;SVTYPE=TRA;CHR2=1;END=205224331;SVLEN=0	GT	./.	E3754240	contig1	size286	2	cov1.06	94	0	0	0	0	41	0	0	0	0	109	17	58.5882352941176	17	58.5882352941176	39	0	0	0	0	0	0	0	0
19	42442594	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGTGGTGGGGTCCTTGGTCTTTTGGGTTGGGGGGGGGGGGGCTGGGGGTCTGGGTTCCTGGGTTTGGGGGGGGGGGGGCTGGGGCCTGGGCTCATGAGGTTGGGGGGGGGGGCTGCTGGGGGCCTGGACTCCTGGGTCTGAGGGAGGAGGGCCTGGGGCCTGGACTCCTGGGGCCGAGGGGGGGGGGGCTGGGGCCGGCGCACCCGAGACAAAGGGAGGAGACTGCTGGGGGCCGGGACTCATGAGTAAGAGGGAGGGGAGAGTGGGGGGCGGGC;SVTYPE=INV;CHR2=19;END=51580963;SVLEN=9138368	GT	./.	E2535918	contig1	size277	2	cov1.09	76	2	17	0	0	38	0	0	0	0	81	0	0	0	0	16	0	0	0	0	3	0	3	0
19	43115024	N	.	<TRA>	20	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCCCGGACGGGGCGGCTGGCTGGGCAGGGGGCTGATCCCCCCACCTCCCTCCCGGACAGGGCGGCTGGCCGGGCAGAGGCTGCATTCTCGGCACTTTGGGAGGCCAAGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTG;SVTYPE=TRA;CHR2=2;END=32519029;SVLEN=0	GT	./.	E27212	contig3	size195	2	cov1.55	118	2	0	0	0	39	0	0	0	0	112	0	0	0	0	46	0	0	0	0	3	0	4	0
19	45105428	N	.	<TRA>	5.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACTAGCTTGAAAAGGTGGTGTCTGATTTACATAGGGCACGAAAGATTAGTCAGACCAGGTGTGCCATTTGCATAGCACATGAAGAAGCTGGCCACCCACCCTAATATTTTATTATGCAGATGGGTTCTTTACCTGGCTGGCGCCATGTTGCCTGCTTTTTACTGTACGCGTGGTGACAAAGAGAAGGGGAGATGGAGCCTCCACATTGAATGCACCTTTTCTATTGGCACAGCTGCCAGCATTCACCCAAGCGAGCTTCCA;SVTYPE=TRA;CHR2=13;END=97542894;SVLEN=0	GT	./.	E515722	contig2	size262	2	cov1.15	185	16	3.25	0	0	38	1	7	0	0	99	0	0	0	0	50	0	0	0	0	5	0	4	0
19	50644327	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACCGCGATCCACACTCTTCCCCCACACGACGCTCTTCCGCTCTGCCCGGCAGCCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCCCCCCCGCTGGGAGGGGTGGCCAGCGGCTCGGTGCGCCCGCGCCACGGCGACGCCCGGCGGAGC;SVTYPE=TRA;CHR2=2;END=114152908;SVLEN=0	GT	./.	E1158954	contig12	size286	2	cov1.06	118	0	0	0	0	46	0	0	0	0	113	1	0	0	0	44	1	0	0	0	5	0	5	0
19	58254173	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAAAAAAAAAAAAAAAAAACACAACCAAATTAGCCGGGCGTGGTGGCACATGCCTATAATTCCATCTACTCGGGAGGCTGAGGAGAATGGCATGAACCCGGGAGGCTGAGCTTGCAGTGAGCGAAGATCACGCCACTTCCTCCAGCCTGGGTCACAGAGCGAGATTCCGTCTCAAA;SVTYPE=DEL;CHR2=19;END=58254624;SVLEN=-451	GT	./.	E3420068	contig2	size177	4	cov3.41	148	0	0	0	0	41	0	0	0	0	54	9	56.1111111111111	9	56.1111111111111	28	0	0	0	0	489	173	494	184
2	5181912	N	.	<TRA>	4.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTTCCCCCCCCCCATCCCCTCCCCTTCCCTTCCCCCCCCCCTTCCCTTCCCCTTCCCCTTCCCCCCCCTGTTCCCTCCCCCTTCCCTTCCCCCCTCCTTTCCCTTCCCCTTCTCTTTCTCCCTCCTATACCTTCCCCTTCTCTTTCTCCCTCCTATACCTTCCCCCTCCTCTTCTCCCCTCTTTTCCCTTCCCCTTCTCTTCCCCCCTCCTATACCTCCCCCTCTCCCCCCTCCCCTCCCATCCACCTCCCTCTCCTC;SVTYPE=TRA;CHR2=1;END=240348388;SVLEN=0	GT	./.	E3891429	contig2	size260	2	cov1.16	72	0	0	0	0	34	0	0	0	0	1810	13	8.92307692307692	0	0	862	13	7.84615384615385	1	30	3	0	9	0
2	15207583	N	.	<DEL>	44	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGGGAGGAGGGGAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGAGGGGAGGGGAGGGGGGGGGGGGGGGGGGGAGGGGAGAGGAGGGGAGAGGAGAAGAGAAGAAAAGAAAGAGAGTAAGAAAGGAATCCTACCACGTGCCACAACATGGATGAGCCTGAAGGACATTATGTTAAGTGACATGTTAGTTGCAGAAGGACAAGCACTGCATGAT;SVTYPE=DEL;CHR2=2;END=33141512;SVLEN=-17933929	GT	./.	E2591711	contig1	size241	2	cov1.25	79	6	51.3333333333333	5	60	37	2	20	1	40	386758	2303	2.19366044290056	8	34.875	141756	871	2.11710677382319	1	34	6	0	18	1
2	87625319	N	.	<INV>	27	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCAGCCAGGCGAGCCACCCAAGCCCCCCCTCCAGCCCACGCCGCCCACCCAGCCCGCCACCCAAGCCCGGCCCGCCAGCCAAGCAAGCCAGGCAGCCAAGCCAGCCAACCCAGCCAGCCAGCCAAGCCAGCCATGCCAGCCAAGCCATCCAGTCAGCGAAGCCAGCTGGCTAGCCAAGCCAGCCAAGCCACACGGCCTGCCAAGCCAGCCAGCCAAGACAGCCAAGCCAGCCAACCAGCCAAGCCAGCCAGCCAAGACAGCCAAGCCAGCCAACCAGCCAAG;SVTYPE=INV;CHR2=2;END=91697227;SVLEN=4071909	GT	./.	E1768166	contig3	size283	2	cov1.07	985	51	6.64705882352941	4	35.5	327	23	5.69565217391304	2	35.5	207	1	38	1	38	73	2	24	1	34	4	0	4	0
2	87647647	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCAGCTAGCCAAGGCGGCCAACCAGCCAGCCAGTCAAGCTGACCAGCCTGCCAGCCAACCAACCCGGCCAGACAGCCAAGGCAGCCAAGCCGGCCAGGCAGCCAAGCCAGCCAAGCCACTGACCCAGCCAAGCCACCCAGCCAGCCAAGCCTGCCAAGAGACCCACCAACCCAAGCCAGCCAAGCCACCCAGCCAGCCAAGCAAGCCACCTCACCCAGCCAGCGAAGCCAGCCAGCCAGCCAACCAGCCCAACCTACCAAGCCACCCAGCCAGCCAAGC;SVTYPE=DEL;CHR2=2;END=87730484;SVLEN=-82837	GT	./.	E2838477	contig2	size280	2	cov1.08	228	1	16	0	0	86	0	0	0	0	744	4	0	0	0	261	0	0	0	0	11	1	17	1
2	87724873	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGGCCTGCCAGCCAACCAAGCCGGCCAGACAGCCAAGGCAGCCAAGCCGGCCAGGCAGCCAAGCCAGCCAAGCCACCGACCCAGCCAAGCCACCCAGCCCGCCCAGCCAGCCACGCCAGCCAGCCCAGCCAGCCAGCCAAGCCAGCCCGCCAAACCAGCGAAGCCACCCAGCCAGCCAAGCCACCCAAGATCCCCAGCCAGCCAGTCAGCCAAGCCAGCCAACTAGCCAAGCCAGCCAAGGCAGCCACCAGGCAAGCCAGCCAGCCAGCCAAGCCAGCCAAGC;SVTYPE=DEL;CHR2=2;END=87730525;SVLEN=-5652	GT	./.	E51689	contig1	size283	2	cov1.07	332	5	0	0	0	104	4	5.5	0	0	647	4	0	0	0	215	1	0	0	0	4	0	5	0
2	87725047	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGCGGGCTGGGCTGGCCGGCTGGGGCGGCCGGCGGGCTGGCCTGGCTGGCCGGCTGGGTTGGCTGTCCGGGCTGGCTGGCTGGGCTGGCTGGCTTGGCTGGCCGGGTGACTTTGCTGGCTTGAATGGCTGAGTGGATTGGCTAGCTTGGCTGGCCAGCTGGCTTGGCTGTCTTGGCTGGCTGGGTTGCCTGGATGGCTTGGCAGGCTGGCTGGCTTCTCTGGCTTGGCTGGCTGGCTGGCTTGGCTGGTTGGCTGGCTTGGCTGCCTGGGATGGCTATCAGG;SVTYPE=INV;CHR2=2;END=90483049;SVLEN=2758001	GT	./.	E162291	contig4	size283	2	cov1.07	88	11	0	0	0	38	3	0	0	0	884	267	2.45318352059925	10	36.9	308	92	3.57608695652174	6	38	7	0	4	0
2	87727650	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGCCGCCCAGCCAGGCAGACAAACAAGGCCGCGAAGGCAGGCCGCCCGCGAAGCCAGCCAAGCCAGGCAAGCCAGCCAGCCAGCCAAGACAGCCAAGCCAGCCAAGCCAGCCAAGACAGCAAGCCAGCCAAGCCAGCCAAGCCAGCCAAGCCACCCAGCCAGCCAAGCTGGCCAAGCCACTCAGCCAGCCAAGCCAGCCAGCCAGCCAAGCCGGCCAAGCCACTCAGCCAGCCAAGATGGCCAAGCCACCCAGTCAAGCCAGCTAAGCCAGCCAGGCAGCCAAGCCAGCCAAGCCAGGCAGCAAGCAAAGCCAGGCAGGCCAGCCAAGCCAGCTAGGCAGCCAAGCCAGAAAAACCAGCCAGCCAACCCAGCCAAGCCACCCAGCCAGCCAAGCCAACATCCTAAGCCCGCACGC;SVTYPE=INV;CHR2=2;END=90485383;SVLEN=2757734	GT	./.	E2174853	contig1	size416	3	cov1.09	154	4	3.5	0	0	48	0	0	0	0	2620	20	20.95	7	47.4285714285714	864	3	43	3	43	9	0	23	2
2	88859483	N	.	<TRA>	22.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATGCGGTAGCTCCTGGCTATAGTTAGGGTTTTTTGTTTTGTTTCGCTTTTATGGCTGAATACTATTCCAGTGTATGGCTATATTACATTTTGTTTATTCATTCATTGGTTGGTGGCCATTTGGGTTATTTCCTCCTTTGGGCTATTATGAATAATGCCGCTATGAACATTCATGTACAGATTTTGTGCAGACATGTTTCCATCTCTCTTGGATATATCTAGGAGTAGAATTACTGGGTCATATGGTAACTCTATGTTCAACTGTTTAAGGAACTGCCAGATTGTTTTTCAAAGCCGCCGCACCATTTCACATTCCCACCAGAAACGTATGAGGGTTCCAATTTCTCCAAATCCTTGCCAATATGTGTTATCATCTGATGTTTTAAAATCATAACCATCCTAGTGGGTGT;SVTYPE=TRA;CHR2=11;END=85246640;SVLEN=0	GT	./.	E4429275	contig2	size411	7	cov2.57	103	20	12.7	0	0	37	6	10	0	0	114	0	0	0	0	48	0	0	0	0	4	0	4	0
2	88859625	N	.	<TRA>	25.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGGCTATTATGAATAATGCCGCTATGAACATTCATGTACAGATTTTGTGCAGACATGTTTCCATCTCTCTTGGATATATCTAGGAGTAGAATTACTGGGTCATATGGTAACTCTATGTTCAACTGTTTAAGGAACTGCCAGATTGTTTTTCAAAGCCGCCGCACCATTTCACATTCCCACCAGAAACGTATGAGGGTTCCAATTTCTCCAAATCCTTGCCAATATGTGTTATCATCTGATGTTTTAAAATCATAACCATCCTAGTGGGTGTGAAGTGATATT;SVTYPE=TRA;CHR2=11;END=85246640;SVLEN=0	GT	./.	E3158968	contig1	size283	3	cov1.60	211	1	40	1	40	86	0	0	0	0	114	0	0	0	0	48	0	0	0	0	4	0	4	0
2	89841329	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATGATGATTCCATTCAATTGCATTCGATGATGATTCCATTCGATTCCATTCGATGATGATTCCATTCGGTTTCATTCGATGATTCTATTCAATTCCTTTCTATGATTATTCATTTCTTTTCCATTTGATGTTTCCATTTGTTTCCTTTTGATGATGATTCCATTCCATTCCATTCAATGGTGATTCCACTCATTTCCATTCGTGTTTCCCTTCGATTCCATTTGATGATGATTTCATTTGTTTCCATACGATGATTCCTTTTGATTCCAT;SVTYPE=DEL;CHR2=2;END=90373818;SVLEN=-532489	GT	./.	E4128127	contig1	size271	2	cov1.11	902	1	60	1	60	327	1	0	0	0	4156	6	0	0	0	1503	5	8	1	40	4	0	3	0
2	89854806	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGTGGAGTGGATTGGAGTGGAATGGAATGGAGTGGAATGGAATGGAATGGAAGGGAATGATTTTGAGAGGAATGGAGTGGAATGGAATCGAATGGAACAGAATGGAATGATTTTGAGAGGAATGGAGTGGAAAGGATTGGAATTGAGTGGAGTGGCATGGAATGGAGTCGAATAGAATGGAATGGAATGGAATGCAACGGCAAGGAATGGAATGGAAAGGAGTGGAAGGCAGTGGAGTAAAGTGGACTGCAATGACATGGAGTGCAACGGAGGGGAAAGCA;SVTYPE=INV;CHR2=2;END=89876232;SVLEN=21427	GT	./.	E4133583	contig2	size282	2	cov1.07	2106	19	12.0526315789474	3	52.3333333333333	667	9	4.22222222222222	0	0	1984	46	5.43478260869565	3	43.6666666666667	622	14	0.642857142857143	0	0	15	1	7	0
2	90288349	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTTGAACCTGCACTGGCCTGACCTTGGCTCTGGCCCTGCTCTGCCTTGTTCCTGGCCCTGACCCAGACCCAGACCCTTTCCTGGCTCTGCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAA;SVTYPE=TRA;CHR2=15;END=21356358;SVLEN=0	GT	./.	E1984676	contig1	size214	2	cov1.41	148	0	0	0	0	61	0	0	0	0	59	2	0	0	0	17	0	0	0	0	3	0	8	0
2	90374017	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTCCATTTGCTGATGATTCCATTCGACTCCATTCAATGATTCCATTCGATGATGATTCCGTTCGATTCCATTCGATGAGGATTCCATTCGATTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAATGACCTGCAAGTCGAAGCGCTCGGGATTAAGCGTTGGTGCTTGGTCAGGTTGTAATTGTTGTGAGGTGTGAGGGTTCAGGAGTACAA;SVTYPE=DEL;CHR2=2;END=90393270;SVLEN=-19253	GT	./.	E934825	contig8	size246	2	cov1.23	911	30	5.33333333333333	4	40	334	7	0	0	0	3383	23	0	0	0	1251	8	0	0	0	6	0	6	0
2	90393031	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTCGTTTTCTTTCTATGATGATTCCATTCGAGTCCATTTGATGATTCTGTTCAATTCCATTCGATGATGATTCCTCTCAAATCCATTTGATGATTCCATTCGAGTACATTCGATTATTCCATTTGATTTTATTCGATGATGATTCCATTCGATTCCATTCGATGATGATTCCATTCGTTTTCATTCGATGACTCTGTTCAATTCCTTTCTATGATTCTTCAATTTTTTTCTATTTGTTAATTCCTTGTGTTTCTATTTGATTTTGATTCTTTTCGTTGTCT;SVTYPE=DEL;CHR2=2;END=91595163;SVLEN=-1202132	GT	./.	E1880950	contig1	size284	2	cov1.06	2934	734	0	0	0	1373	441	0	0	0	420	9	3.88888888888889	1	35	148	3	2	0	0	5	0	4	0
2	91595167	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTATTTCATTCCATGATTATTCCATTCGTTTTCATTCGATTATTCTATTCAATTCCTTTCTATGATTATTCAATTCTTTTCCATTTGATGATTCCATGTGATTCCATTTGATGATGATTCCATTCGTTTGCATTCGATGATGATTCCATTCGGTTTCATTCGATGATTCTATTCAATTCCTTTCTATGATTATTCAATTCTTTTCCATTTGATGATTCCATGTGATTCCATTTGATGATGATTCCATTCGTTTGCATTCGATTATGATTCCATTCAGGTCCA;SVTYPE=DEL;CHR2=2;END=91614186;SVLEN=-19019	GT	./.	E143869	contig1	size283	2	cov1.07	439	2	0	0	0	158	0	0	0	0	1647	15	0	0	0	652	9	0	0	0	6	0	5	0
2	91977417	N	.	<TRA>	1	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCTGGACTCTTATAACAAAATAACATAAACTGGGTGACTAAAAAACAACAGATATTTCTTTTTTCATACTTCTTGAGGCTGTAAGATCTCAGGTCAAGATGCTCGCAAATTCAGTGTTGATGAGAGCCCATTTCATGGTTCATAGATGGTGCCTTCTCACACTCGGCTAATTTTTTGTATTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTCCAACTCCTGACTTCAGGTGATCTACCCACTTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGCGCCTGGGCAGCTCTTTGACATATTTCAAGATGGCTACTCGGAAGACTGGAGATAGCATCTTCTACAAGAATAGCTGAAAAGCTCATGAGTCCTTTAGGTATCCCCCAGACCAGTCAGAACAGACACATAGTAATTTGCGAGTAACATCTTCTCTTGTTCCTTTGGACCATGGACCAGTGTTCCTCACTGGGAACGTGGGCTCCTGACACTTCAAAACTGCCAATTTGCTGGGGCAAAGGCAAGTTAAAAATGTCATAAAGTTTTCAAGTTGTCTTTTTCTTGAGTCTGCTTTCACTCGGTTGTTGTAATCTTTTGACTATTTTCCACAGTTTTGGCAAAGTTTATTCGGACAGTTTCTCTTAGTTGTGTAATGTTTCTGTGGGGAAATGAAAGATTGCAGCTGTCTCCACTGCCATTTTGCTGATGCTCCTCTTTTGTCAATTTTTGCTTCATGTTATTATGCTTTGTTATTAGTTCATGTATTAGTTTTCTAGGGCTGCCATAACCAAGTAACACAAACTGGGTGCCATGAACAACATACATTTATAGTCTTATAGTCCTGGAAGCTAAAAGTCTGAGATTGAGGTGTCAGCAGGGATGGTCCCTTCCAGGGCTA;SVTYPE=TRA;CHR2=9;END=70157593;SVLEN=0	GT	./.	E4208783	contig1	size902	125	cov20.93	440	39	0.153846153846154	0	0	125	0	0	0	0	383	21	1.14285714285714	0	0	123	0	0	0	0	15	0	11	1
2	91980792	N	.	<INV>	6	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTTCTCTCCATTAAGCATGCCATTAACTGAGTAAAAGAATCAAGCTGCAATTATGTAAACTACGTTTTCTAAAACCATAAAGAAAAGAAGAAATAAAAAGGTATTTGGGAAAAAAATCCAAAGGTACAGTCAACTACACAAAAAAAGCTTAGTCTCATTAATCATTATGAAAATGCAAATGGTAACTGAAAGAAGATAAAACTACAATTCAAAGAGAAAGCCTAAAATTTCAACCCCCCAAAAAGTCTGGGTTTTGGAGATCTGGGATGGAATAGGGTTCCTAACCTGACAACAATGAAAGAACCAAACTAACCTCAAAGTCATGACTTTATTTTTATAGCAACGAGGTTGCCAAGAACTGAGTCAAAATGTGAGGGAAAACAAGCACCTGCAAGGAGAAAGAGGACAGATGCACTTACATAGGACAGATGCAAATAGACACCACTATGACAAGTAAAGCTGGAATAATCAATAAATTCCTAAAGACAAAGTGGGGCTGGTCAGATTGGGAGACGGCTGACAGCTGCAGAAGTTGGGAAAGATCCATCATCTTGAAAACTTTTTCTCCACAAACCCACTGTGATCTCTCAAGCAATTGGTAAGGAATCCAAGAGAGTCTGTATATGACACAGATCAGGGAGAGCAGAACACTTGGGAGGTGACCAGGTCTCGGGGGTCGAGCCCTTATGAATCGGATTAGTGCCTTTATAAAAGAAGCTCAATGGAGTTCTTGTGTAAATTTCTATTTTATGCTTTCTCTATGCATATGCAAATTAATCTATCCACTTCTCTATCTCTATGTAGTAACATATGAAAATCAGGCCTCTATTCTTCTAATGGACATACACATGTTTGCGTATAGAATATCAGACTCTTTATAG;SVTYPE=INV;CHR2=2;END=92240330;SVLEN=259537	GT	./.	E1130050	contig1	size883	38	cov6.50	483	20	13	5	40	148	0	0	0	0	348	27	5.96296296296296	1	40	120	1	0	0	0	21	0	24	0
2	91995259	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTTTTCAGAACGAATGACGTTGGGATCAGAAAGCCATCATTCTAATTGATGGTTCCAAGACTACACGGGCTCACACTCCCAAGAACAAAAGTAAATCATCGCAAAGGTGCTTCCTGATAATTTTAGAGAATGGAGAATTACTGTAACATCTTTCTGATTTTAGGAGAGGTAGCAGTTCCCTGTTTAGCCTAAACGCTATTTTTTTTTTAAAGCTCAGCCAAGAGACTCCATTATAATTTTCAAATGTGTGTAACTTAAATTCTCATATGAAATGCCACTATGCTTAAATTAGTCAAAACATTTTCCCCATCTACAACTCTATCTTGTCATTGCAATCATTTTCACAAAAGTGACTGCAGCTCACAGACCCTAAAAGGAGAAAATCCAGGGTAGGTTATCTGATCTAGTTAGTTTCGAAGACAGGATCTAGAGATTATTTAATATGAAATAGGTCACCTGAAATGAAGTGTTTACTGAAAACAGCTTGGATCAGCCCAGTTTTCTACCACTGAACCATGCATTTGGTTTAAAAAACACAAAGAAAGAGCAATGAGGGATAGAAAAGGTTAGTGATGGAGACACCAGCGATGCATTTTGCAACAAACAATGTGAAAATTTTACGGATTGGTTCAGCTAACTTACTACAGTTTACATTCCTCTCAGGTGGGAGAATTGTTG;SVTYPE=INV;CHR2=2;END=92253168;SVLEN=257910	GT	./.	E2922456	contig4	size679	27	cov6.00	452	27	0	0	0	132	0	0	0	0	247	39	1.69230769230769	0	0	67	2	32.5	1	40	6	0	6	0
2	92278132	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACCCTCTTTTTGTAATATTTGGAAGTGGACATTTGCAGCGCTTTGAGGCCTATGATGTTTTAATGATTCGGCGACCACCGAGATCTACCCTCTTTCCCTACACGACGCTCTTCCGATCTTGTGTATTCAACTAACAGAGATGAACCTTTCTTTTTACAGAGCAGTTGTGAAACCCTCTTTTTGTGGAATCTGACAGTGGATATTTGGATCGCTTTGAGGATTTCGTTGGAAACGGGATTACATATAAAATCTAGAGAGAAGCATTCTCAG;SVTYPE=DEL;CHR2=2;END=92321050;SVLEN=-42918	GT	./.	E487946	contig1	size272	2	cov1.11	315	735	0.0557823129251701	1	37	141	255	0.450980392156863	2	57.5	56037	304	4.9375	12	33	20598	78	4.87179487179487	2	35	3	0	4	0
2	92313236	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTGAGTCAACTCACGGAGTTGAAACTTGGTTTTGATACAGCAGTTTTGAAACCCTCTTTTTGTTAGAATCTTCAAGTGGATATTTGGATAGCTTTGAGGCTTTCATTGGAAACGGGAATATCTACACATAAGAACTAGACAGAAGCATTCTCAGAAACTTATTTGTGATGTGCGCCCTCAACTAACAGTGTTGAAGCATTCTTTTGATAGAGCAGTTTTGAAACACTCTTTTTGTAATATCTGCAAGTGGATATTTGGATAGCTTTGAGGATGTTCGGAAGAG;SVTYPE=DUP;CHR2=2;END=132998485;SVLEN=40685249	GT	./.	E1988922	contig11	size284	2	cov1.06	64396	590	12.1915254237288	113	39.5486725663717	21840	227	13.0969162995595	48	39.4791666666667	4640	172	3.92441860465116	6	47.1666666666667	1334	45	2.84444444444444	1	33	11	0	5	0
2	98129524	N	.	<TRA>	5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAAGTATATATTAAAGAATAGCATTGTTTACATAAGGCCTTTGAACTAAAATAAAATATTTCAAGATTTATTATAAATAATTGTAGCTATAAATGCCATGATTCTTTTTTTTATTTTTTATTTTTATTTTTTTTTTGATACAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATATCGGCTCACTGCACGCC;SVTYPE=TRA;CHR2=5;END=171373814;SVLEN=0	GT	./.	E4405004	contig2	size202	2	cov1.50	760	529	5.49338374291115	4	43.75	252	171	4.60818713450292	0	0	65	4	31	2	60	42	1	60	1	60	14	0	4	0
2	110347664	N	.	<TRA>	30.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATCCACACAGTATTCAAGCTTTTTTAGTAACCATGTTTCTTTTAAAAATCTGAAATTAGTGCTAGTGAGTTCTTATTGAGACAATATGAAGCCCTTTGCACTGTAAATATTTTATATTTTTGGAGAGACATTTGATGATATCTAAGAGTAAAAATGAATATATATGTGTGTGTATATATATACACACACATATATGTGTAATATATGTGTGTGTATATATATACACACACATATATGTGTATGTGTGTATATATACACGTGTGTGTATATATACACACACACACATATATGTGTATGTGTGTGTATATATACACACACACATATATATGGTGTATATATATACCATCTTCAACTCAGTGAACCTGTGTTTTAAAATGTATCGTAAAGAAGGAATAGAAGAGGGGAAGAAAAGCATTATTTATATAGCATTGTTAATTTTTTTCAAATTAAGAACATGATAATATCTACAAGGATAAATTCATTCCCAAATAGTTAATTGTATGTAACATACAACTCGATGTAGTGTATCATACCTCAGCCTCTTTTTGGAGTGAATCTGTTACTCATTCATGAAGGAAAGAACTCTTACCAACGGGTGGTCAAGTAGAGACTGGTGATCTCCTGCGATGTTAGAGGGGTAAGGTGTAGGGGCTCTGTTAAGAGGAGGTGTTCACATATTTTCTTACTATACTTAACAC;SVTYPE=TRA;CHR2=6;END=64384220;SVLEN=0	GT	./.	E612490	contig1	size700	25	cov5.39	142	0	0	0	0	27	0	0	0	0	147	40	52.35	37	56	35	3	41.3333333333333	2	60	17	0	4	0
2	114152908	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACCGCGATCCACACTCTTCCCCCACACGACGCTCTTCCGCTCTGCCCGGCAGCCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCCCCCCCGCTGGGAGGGGTGGCCAGCGGCTCGGTGCGCCCGCGCCACGGCGACGCCCGGCGGAGC;SVTYPE=TRA;CHR2=19;END=50644327;SVLEN=0	GT	./.	E1158954	contig12	size286	2	cov1.06	113	1	0	0	0	44	1	0	0	0	118	0	0	0	0	46	0	0	0	0	5	0	5	0
2	114822093	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTGTGCCACTGCACTTCAGCCGGGGTGACAGAGCAAGATTCCATCCTCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGAAAGAAAGAAAAAAAAAAAAAAGAAAGAAAAAAAGAAGAGAAAAAGAAAAAGAGGAAAAAAGAAAGAAAGAAAGAAAAAAAAAAAAAAGGAAGGAAAGAAAGGAAGAAAGAAAGAAAAAGAGAGAAAGAAGAAAGAAGAAAAGGAAAGAAAGAAAGAGA;SVTYPE=TRA;CHR2=1;END=148795148;SVLEN=0	GT	./.	E816213	contig1	size286	2	cov1.06	121	5	32	3	53.3333333333333	43	1	40	1	40	199	0	0	0	0	63	0	0	0	0	3	0	5	0
2	116246477	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAATGCTAGATGTTAAGCACAGCCTAATGAGTGCTAGTTATAATTTT;SVTYPE=TRA;CHR2=11;END=58171838;SVLEN=0	GT	./.	E2689772	contig2	size153	2	cov1.97	128	23	6.78260869565217	4	39	44	7	0	0	0	109	80	44.6125	59	59.6779661016949	34	26	44.0384615384615	19	60	7	0	56	2
2	122339851	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGAGAACGAGAGAAAGACAGAGAGAGCGGGAGAGAGAGAGAGAGAGAAAGAGAAAGGGAGGGAGAGAGACAGAGAGAGACAGACAGATAGACAGGCAGAGAAAGAGAGTAAGACAGAAGATAGGCACAGAGAGAGAGACAGAGAGACACAGAAAGAGAAAGAAAGAGAGAGGCAGACAGACAGAGAAAGACAGAGACAGAGAGAGAGAGAGGAACAGACAGAAAGAGAGAGGGACAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGA;SVTYPE=DEL;CHR2=2;END=133028333;SVLEN=-10688482	GT	./.	E244107	contig1	size269	2	cov1.12	135	3	0	0	0	59	1	0	0	0	38701	184	13.4239130434783	40	40.05	12996	41	8.41463414634146	4	36	27	1	3	0
2	122339853	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCCCTGTCTGTTTCTCTCTCTCTCTTTCTGTCTGTTTCTGTCTCTCTCTGTCTGTCTCTGTCTTTCTCTGGTTGTCTCTTTCTCTGTCTTTCTGTCTCTCTCTCTCTTTTTCTGTGTCTCTCTGTCGGTCTCTCTCTCTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCCCTCTCTTCTGTCTTCCTCTCTTTCTCTGCCTGCCTGTCTGTCTCTCCCTCCCTTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTTTCCGTCGGTTTGTCTCTGTGTCTCTCTGTCCCTTTCTCCCCGTTTTTGGCTTTCTCTTTTGTTTTCTCTGCCTGCTCTCCCCTCCCTT;SVTYPE=DEL;CHR2=2;END=133028404;SVLEN=-10688551	GT	./.	E4365583	contig10	size388	3	cov1.17	146	14	0.0714285714285714	0	0	65	4	0	0	0	148215	3189	7.68109125117592	294	41.8571428571429	48951	1048	7.50286259541985	85	40.6	27	1	3	0
2	122339890	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCCCTGTCTGTTTCTCTCTCTCTCTTTCTGTCTGTTTCTGTCTCTCTCTGTCTGTCTCTGTCTTTCTCTGGTTGTCTCTTTCTCTGTCTTTCTGTCTCTCTCTCTCTTTTTCTGTGTCTCTCTGTCGGTCTCTCTCTCTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCCCTCTCTTCTGTCTTCCTCTCTTTCTCTGCCTGCCTGTCTGTCTCTCCCTCCCTTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTTTCCGTCGGTTTGTCTCTGTGTCTCTCTGTCCCTTTCTCCCCGTTTTTGGCTTTCTCTTTTGTTTTCTCTGCCTGCTCTCCCCTCCCTT;SVTYPE=DEL;CHR2=2;END=133028530;SVLEN=-10688640	GT	./.	E4365583	contig10	size388	3	cov1.17	224	6	10	1	60	86	2	0	0	0	66546	149	9.74496644295302	18	41.1111111111111	21832	52	11.1730769230769	7	38	31	1	4	0
2	122339916	N	.	<DEL>	30	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGAAAGAAACAAACAGAGAGAGAGAGAGAGAAAGAGAAAGGGAGGGAGAGAAAGAAACAGAAAGGGAGGGAGAGAGAGAGAGAGAGACAGACGGGGAGAGAAAGAGAGTAAGACAGAAGACAGACACAGTGAGACAGGCAGAGAGGGAGAGAGAGAGACAAAGACAGAGACAGAGACAGAGAGAAAGAAAGAGACAGACAGACAGAGAAAGAGACACAGAGAGAAAGACAGAGACGAACAGAGAGAAACAGACAGAGAGAAGGCCCTAGCCCAGTAGCAATA;SVTYPE=DEL;CHR2=2;END=133029148;SVLEN=-10689232	GT	./.	E3839026	contig8	size283	2	cov1.07	131	2	16.5	1	33	62	0	0	0	0	19770	5184	34.1140046296296	2967	47.479271991911	6672	1662	33.9620938628159	934	47.4925053533191	25	1	3	0
2	128127051	N	.	<TRA>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATGGACACTCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAACAAAAACAAAATTAGCCGGGCATAGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGTAGGCAGAGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAGTATACATGCACACTAGGAGCAAAACTATGGAAACTAATGTGAAAATATGGAAGAAACAAATAACTCAT;SVTYPE=TRA;CHR2=6;END=18373279;SVLEN=0	GT	./.	E26205	contig1	size300	4	cov2.01	95	1	0	0	0	35	0	0	0	0	118	11	49.9090909090909	11	49.9090909090909	45	1	2	0	0	0	0	0	0
2	134821993	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTTCCGATCTCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCATGATGATAATGGCGGTTTTGTGGAATAGAAAAGGGGGAAAGAGATCGGAAGA;SVTYPE=TRA;CHR2=19;END=50644221;SVLEN=0	GT	./.	E725546	contig2	size162	2	cov1.86	103	1	0	0	0	35	0	0	0	0	92	2	23	1	46	59	1	2	0	0	4	0	5	0
2	135364636	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGTGCAGACGTGTGCCCTTCCGATCAAGAGGACGGCCCCCGAGAACTGTGGTGGGGAAAAGGACAGCCGCCGAGAACTGTGCTGGTGAAAAGGACAGACCCCGAGAATTGTGCTGGTGAAAAGGACAGACCCCGAGAACTGTGCTGGTGAAAAGGAGAAGAGCCGCGAACAGGGGTGGTGGAGAGGACGGGAGGCGCGCAGTATCGTGGAGAAAAGGAGGACAGACCCCGAGAACTGTGCTGGTGAAGAGGGCAGGAGCGGAGCGGAGTG;SVTYPE=DEL;CHR2=2;END=135366321;SVLEN=-1685	GT	./.	E465885	contig2	size271	2	cov1.11	184	3	2.33333333333333	0	0	77	1	0	0	0	174	2	0	0	0	66	1	0	0	0	8	0	5	0
2	135364672	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGTGCAGACGTGTGCCCTTCCGATCAAGAGGACGGCCCCCGAGAACTGTGGTGGGGAAAAGGACAGCCGCCGAGAACTGTGCTGGTGAAAAGGACAGACCCCGAGAATTGTGCTGGTGAAAAGGACAGACCCCGAGAACTGTGCTGGTGAAAAGGAGAAGAGCCGCGAACAGGGGTGGTGGAGAGGACGGGAGGCGCGCAGTATCGTGGAGAAAAGGAGGACAGACCCCGAGAACTGTGCTGGTGAAGAGGGCAGGAGCGGAGCGGAGTG;SVTYPE=DEL;CHR2=2;END=135366321;SVLEN=-1649	GT	./.	E465885	contig2	size271	2	cov1.11	221	1	0	0	0	105	0	0	0	0	174	2	0	0	0	66	1	0	0	0	8	0	5	0
2	141014019	N	.	<TRA>	24	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTCTTTCTTTCTTTTTTTCTTTCTTTCTTTCTTTTTCTTTTTTTTTTTTTTTTGTTTCTTGTTTTTTTTTTTTTCTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGACAGAGTCTTGCTTTGTCGTCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCT;SVTYPE=TRA;CHR2=11;END=126984683;SVLEN=0	GT	./.	E1512686	contig1	size264	2	cov1.14	166	5	49.2	4	55	72	0	0	0	0	105	19	49.6315789473684	17	55.2941176470588	32	7	51.8571428571429	6	60	3	0	6	0
2	161504861	N	.	<TRA>	5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCATGTGGAGTGTCTGGAGCGGCTGCTGCCATCACACCAGCTGCAGCAGGAAGGTGCCGGCAGTGGTGGCAGGAGTGGCTGCAGGAGCAGCAATGGCGGTGATGAGATCCCCGTGCCCCACGGCCCCGAGGCAGCCGACTGCACCACCCCCACCCTCACACAGCCGGGCAGGACCCACTCCCAGGCCCAGGGCCTCCACCACGGCCTCAACCTCACTCCCCACTGTGTCTCGGGAACCCCTGAGCACTTGGTGGAAGGCACA;SVTYPE=TRA;CHR2=3;END=74801651;SVLEN=0	GT	./.	E84807	contig1	size263	2	cov1.15	202	1	60	1	60	70	0	0	0	0	143	18	3.55555555555556	0	0	30	2	0	0	0	3	0	4	0
2	180884405	N	.	<TRA>	11	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTATGAAAATATCACAAGGTGTACACCCACTGTGATATTAGAAGTAATAACTACCTAGGATATTATGAATATCACAGTGGGTGTACACACATGGTGTGTGTATACACACATGGTATATGCCCACTGTGATATTAAGAGGTATAGCTTCCTAAACTATTATGAATAATATGACAAAGTGTACGCGATGTATGTACACCCATTGT;SVTYPE=TRA;CHR2=11;END=17076525;SVLEN=0	GT	./.	E3567396	contig2	size204	2	cov1.48	228	10	26.4	4	37.5	63	2	8	0	0	124	4	0	0	0	53	0	0	0	0	4	0	17	1
2	203516734	N	.	<TRA>	33.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCGCTCTTCCGATCTTGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGTGGACAAATGGTTTGAGCCCAGGAGGCAGAGGTTGTAGTGAGCCGAGATCGTACCATTGCACTCCAGCCTGGGCAACAAAAGTGAAACTCTGTCTAAAGAAAAAGATCGGAAGAGCAC;SVTYPE=TRA;CHR2=14;END=21044269;SVLEN=0	GT	./.	E682527	contig1	size166	2	cov1.82	99	0	0	0	0	35	0	0	0	0	141	15	56.8666666666667	15	56.8666666666667	45	1	60	1	60	1	0	0	1
2	208493237	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGGCGGGTGGATTACAAGGTCAGAAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATGTCTACTAAAAATACTAAAAATTAGCCGGGCATGGTGGTGGACACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCTGAGATTGCACCACTGCAGCCTGGACCTCCTGGGTTCAGGCATCCTCCCACCTCAGCCTCCTAAGTAGCTGGGACTACAGGTGTGTGCCACCACACCCAGCTAATTTTATTTTTTGTATAGAGAGAGTCTTGACA;SVTYPE=DEL;CHR2=2;END=208493557;SVLEN=-320	GT	./.	E1692901	contig1	size316	6	cov2.87	74	5	28.2	2	58.5	23	0	0	0	0	88	9	50	8	53.25	31	0	0	0	0	454	205	457	187
2	219112340	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTATGATAGCTTACAGTTTGGAATTAATAAGCTTGTTCACACTGCACCCAATGCCACTGGAATGTCTCCTTTGTGAAATGTAATTTAATTCACCTCAGTGGTAAAGGTGAACCTGTTTATTGGTGATGAATCTGTTGATTTACCAAATTTCATTAAATCTAAACTATACACTTTTTTCTTTTTTCTTTCTCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCTTCCCAGGCTCAAACAATTCTCGTGCCTCAGCTTCCCAAGTAGCTGGGACCACAGGCGTGTGCCACTGCGCCCAGCCAGCTATACCATTTTTTTCAAGTTTTTGTCTTTGAAGCTGGGATGCATCTT;SVTYPE=DEL;CHR2=2;END=219112777;SVLEN=-437	GT	./.	E3568025	contig2	size374	12	cov4.84	122	10	49	9	54.4444444444444	43	0	0	0	0	128	13	52.2307692307692	13	52.2307692307692	43	0	0	0	0	560	217	554	235
20	7543461	N	.	<TRA>	47.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATCGCGCCACTGCATTCCAGCCTGGGCAACCGAGGGAGACTCTGTCTCAAGAAGAAAAAAAAAAGAAATTTTTGCATCTATGCTTATGATACATATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCTTGTATAAGAAAATAAAATTGGGAGTTGAAGGGCGCTGTATTTCTATGTGTATCTGCCCATGTGTGACCTCAATGAATGGTCTGCACAATATTGAAACCTGTACCTCTCTCAACCTACTCTT;SVTYPE=TRA;CHR2=8;END=65651083;SVLEN=0	GT	./.	E3119026	contig1	size268	2	cov1.13	127	12	55.75	12	55.75	40	1	60	1	60	136	0	0	0	0	38	1	60	1	60	0	0	0	0
20	13160730	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTGTAGTCTATGGACACAGCGTTGGCCATTCTGTATTCAGAATAAACAGCCTGCCCTTCTCTGAAGTCATCACTCATCCAGACTGTAGGTTGGCCTCCCCACCTCATTCTGAATCCTGATTCTAGGGGTCTCTAGTCAAAATTTGCATTTACAAAGCAACATAAAAAGTAAATTTCTTGGAAATTAAAGAGAAACACACATGGATTATCTACTAAAAACATATAATATTAAGAATTTTTACCAAAAAATTTAATAGGTTGAGAGTAAAATATTCTTAGATAGGAAATGAGAATTTTACAAATAATTCTCTCCAAATTATAAACTTAATAAAAACAAAACTATTTTGAAAAATAACAATGAACAATGGCAGATTATCAAGCAATAGCACAAGCAGTTTTCTTTTATAAGA;SVTYPE=DEL;CHR2=20;END=13164100;SVLEN=-3370	GT	./.	E2230849	contig3	size410	36	cov13.26	142	41	59.5609756097561	41	59.5609756097561	36	0	0	0	0	91	46	58.6521739130435	46	58.6521739130435	62	0	0	0	0	22	0	29	0
20	14962958	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGGTATCTGGTGGAAGAAATTTCTAAGCAGCAAAACATTCAAGAGGTGACTTGGGTACTCTTAAATGCATTCAGTTTCAGAAGGGAAATGGAACATAAAATTTGGAAAATTTGCAGCCTAACAGTGCCAACGATGGGGAATGAAAAATCAGTCTCTTGCTATCCTTTCCCGTGGTGAGCTTTCAGCTGCCACACTTTCTCATTCTCTTCCCTCAAGCTGGGCCAGATCACATGGGCAGGCAGAGGAAGGAAGACTTGATAAAAGGTGTAATTT;SVTYPE=DEL;CHR2=20;END=15013948;SVLEN=-50990	GT	./.	E3805528	contig1	size274	18	cov9.92	150	23	51.8260869565217	19	60	50	0	0	0	0	117	26	59.6538461538462	26	59.6538461538462	55	0	0	0	0	18	0	15	0
20	14988825	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGAAAAGAACTGGCTTTCTTTCTATGAAAATAAGTTGGTGAATTAACGTGCTATTAGTTCTTTATTAAAATAAAACTTTTGATATGTAGCCTATTTTACTGACCAATTATAAGATTATTTAAAATAAGAATACCTGTATGTTTTTAGAACAGAGAAAGTGGGAACAATGGAGAATGAAGTCACATATATTTTTTAATCTTGTTTTTACAGTAGGTGGTTTTAAGTCCTACCATATGATGGCTGGTATTTTCGAGAATTGTTTCTTTCTATCAGTAGAAAATGTGTCCCTTCCAACGTTCCATTACTTGAATGTCTGTGTTAACCTAGAAAGACAGTAGGAGACTAAAACTTGTAATATTTTCATTACTTGAAAGATTAAATTATGTTTTATTGTATGAGTTCTTTAGTATTTTCCCTGGATAGGCCTTTTCTTCCCATCACACAAACAATAGAGACAACTTTATGAAATATGAGAGAATTGTATTTTAATACTCTGAGGTAGGATCAAGCTACTTTCATCAGTTGATACAATTTTCCCCTAAAGAAATTCTAGCTGTGAGGGCCAATGGACTTGGGTTACATATAAGAATTATATATACATTATCATTTGCTTTTGAAAGTAATTATTCTAAGGCTAAGTTAGGTTTGAATTTGATTCTGAACAATGATGATGCATTTGAACTGTTAGGGTAATTAGGACTATATCCCATTCACCCACACACTCTTTTTCATGTGTAGTCCTTTAAACTGCACAGCCTTTGAAGGATGGTTAGTTTGTATCTGGGGTTTGTGTTTTGTTTTTT;SVTYPE=DEL;CHR2=20;END=15108818;SVLEN=-119993	GT	./.	E2367966	contig1	size803	25	cov4.70	149	21	51.0952380952381	21	51.0952380952381	52	0	0	0	0	158	18	59.5555555555556	18	59.5555555555556	45	0	0	0	0	11	0	6	0
20	15000624	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATTGTGTAGGTACTGATATAGAAAGAGAGAAAGCAAATTTTTACGAACATTTTATTGATGAAATTAAACATAATAATAATTGAATACTTAAAATATTAACTAGTAAATAAGAAGAAAATTTATTCTAGTAATGAAAAGGATGAAATGCTTAAAAATGGCTACAGTGATAAATTACATTATGTATATTTTACCACAATTAAAAATGCATGTCTTCATACTAAAACAGGTATCTTAAAATGTTTACCTCTGCTGCCAACGATGGGGAATGAAAAATCAGTCTCTTGCTATCCTTTCCCGTGGTGAGCTTTCAGCTGCCACACTTTCTCATTCTCTTCCCTCAAGCTGGGCCAGATCACATGGGCAGGCAGAGGAAGGAAGACTTGATAAAAGGTGTAATTTAGTCCTGCTGCTGCTTGTCGCAGTATATGCTTTGTCCATTTTATCTGCTTATGACCCAGTTATTTGCTTTTTCTCTTTATACACTTGAGGTAACCTTGGAAATGGGCTCTAAAATCTGAACTGAAATGAAATGGTCTTCATGTACCCCCAGTGGTGTGATGGTTTGTGCTTCTAATAAAATAATTTAAGCTAAGCTAAGCGTGCATCCACTATAACTCTCTAACTTGTGAAATCTGTAGCTTCAGAATCATCATTCATCATTTTTGTCTTCCAAGACACTAATGGAAATTAAAATAAACAAACCTGTCCATGTTAGAAAGAGAAAAGATCCTCTACAGTGACAAGTTTCACACAAATTGCAATA;SVTYPE=DEL;CHR2=20;END=15013842;SVLEN=-13218	GT	./.	E4382603	contig1	size764	31	cov6.13	101	28	58.7857142857143	28	58.7857142857143	54	0	0	0	0	77	26	57.2307692307692	26	57.2307692307692	50	0	0	0	0	12	0	11	0
20	30964319	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACCTCTGCCTCCCGGGTTGAAGTGATCCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATTATATGCGTGAGCCACCACACCCGACTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTTACCATGTTGGCCAGGCTGGTCTTGAACTCCTTACCTCAGGTGATATAATATACAACAGATATAATATGTCTATTATATATTATATATAATGTTATATAGATATCTATATTATATATAATATATTAATAGATATATTA;SVTYPE=DEL;CHR2=20;END=30964827;SVLEN=-508	GT	./.	E3807937	contig1	size256	6	cov3.54	134	5	22	2	48	40	0	0	0	0	41	5	55.2	5	55.2	12	0	0	0	0	523	168	504	156
20	33289750	N	.	<TRA>	51	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTCCGATCTGCTAGTTTTTTAAGAGACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAATTCCTGGCCTCAAGGGATCCGCCAACCTCGGCCTCCCAAAGTGTTGGGATTATGGCTGTGAGCCACCACACCTGGCTGACATACTTCTCAGATCGGAAG;SVTYPE=TRA;CHR2=1;END=200077033;SVLEN=0	GT	./.	E3286114	contig1	size161	2	cov1.88	131	6	44.5	5	53.4	36	0	0	0	0	161	7	49.8571428571429	7	49.8571428571429	39	0	0	0	0	2	1	0	0
20	36552531	N	.	<TRA>	3	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTGTCTCTGCAAATAATAATAAACAGCCAAGTGTGTTAATACACATTTGTGGTCCCATCTGCTCAGGAGGCTGAGGCAGGAGAATTGCCTGAGCCTGAGTGGTCAAGGCTAGAGTGAGCTGTGATTATGCATTGCATTCCAGCCCAGGGGACACAGTGAGACCCTGTTTAAAGAAAAAAACAAACAAAAACTAAAAATTAACTAGGAGTAGTGGCATGCACCTGTACTCCCAGCTACTTCAGAAGCTGAAGTTAGAAAAGCATTTGAGCCTGAGAGTTTGAGTCTGCAGTGAACCATAATTGAGCTACTGAACTCCAGTCTGTGTGA;SVTYPE=TRA;CHR2=12;END=70997911;SVLEN=0	GT	./.	E3912929	contig3	size328	3	cov1.38	310	19	0	0	0	99	3	0	0	0	127	57	1.89473684210526	0	0	41	12	3.16666666666667	0	0	7	0	3	0
20	37274467	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCGGGAGGAGGAGGGGAAGATGCAGGAGGAGGAAGAGAAGATGCAGGAGCAGGAGGAGAAGATGTGGGAGCAGGAAGCTCCACTCTCAGGGTCCCCTACTCCAAGGTCCACTTTAGGGGCTGAATGCCCCCTCCTCATTCCACCAAACCAGTGCTTCCGTCCCGTGTCCAAACAAATGCATATTTCCAAGCCCTGTGGGACGCTGGGCCAGGGAAGAGGCCACGATGACCCTGGAGAGGGCTCTGCCTCTCGCCCCCAGAAGTCCTATCCCCCTGCCACTAGTTCAATATGAATCTGTACCAACTAAAAGCAATATTTTAGTCAATATTTCCTGAGGTGAATTGATTTATATTGTTTTCTTCTATTAAAAAAAAAACACATTCCCATGTGTTTCCTTTTCCTTCATGGTTTTGAAAATATGGAATCAAGTTTTCTTTTTTTTTCTTTTTTTTTGAGACGGAGTCTCACTCT;SVTYPE=DEL;CHR2=20;END=37274668;SVLEN=-201	GT	./.	E2267574	contig1	size471	19	cov6.09	134	19	39.1578947368421	13	49.6153846153846	41	0	0	0	0	165	25	56.44	24	58.2083333333333	43	0	0	0	0	674	191	643	192
20	39841385	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTAGATGAAAATTACATTACATTTTTATATCATCATGGGTAATACTGACAACCTTTTTTTTTTCCTTTGGAGATGGAGTTTTAGTGAGTCACTCAGGCTGAAGGGCAGTGGTGTGAGCTGTGCTCACTGCAAGCTCTGCTTCCCATGTTCAAGCAATTCTCCAGTCTCAGCCACCAGAGTAGCTGGGATTACAGTCATGCACCAACATGTATAGCTAACTTTTGTATTTTTAGTAGAGATAGGGTTTTGCCATGTTGGCCAGGCTAGTCTCAAACTTCTGATCTCAAGTGATCCACACACTTTGGCCTCCCAAAGTCCT;SVTYPE=TRA;CHR2=10;END=121793492;SVLEN=0	GT	./.	E4090593	contig1	size319	3	cov1.42	297	20	3	1	60	96	5	0	0	0	66	38	0	0	0	30	10	0	0	0	4	0	4	0
20	50072530	N	.	<TRA>	30	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCAGCCATCTCACCCATTCACCCATCCACTCATCCATTCACCTATCCACCCACCCATCCACTCATCCATCCACCCATCCATTCATCCATTTACCCACCCATTTACCTACCCATCCATTCACCCACGCTTCTACCTACCTGCCCTTCCATCCACCTACCCAACCACCCATCCATATACCCACCCACCCACCCATGCACCCATCCATTCACCTGTCCACCCATCCATCCACCCATCTATTCATCCATTCACCCACCCATTTACTTACCCATCCATTCAC;SVTYPE=TRA;CHR2=13;END=114078987;SVLEN=0	GT	./.	E2344867	contig1	size278	2	cov1.09	133	0	0	0	0	40	0	0	0	0	160	38	49.1842105263158	32	57.0625	60	10	47.8	8	58.875	4	0	3	0
20	51231055	N	.	<TRA>	30	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTTCATATTTCATGTCTAAAATTTTAGTGAATAGAAATATTCATGAGACTCTGAACTCCAGTCATAATAATAACTGGTTGTTATGCAACATTACTTGTTCAAGGTTCCCTTCCCTTCCTTTCCCTTCCCTCCCCTCCCCTCCCCTCCCCTTCTCTCCCCCCCCCCCCCCCCCCGCCCCCCCCCTCCCCCCCCTCCCCTGCCCTTCCTTTCTTCCCGGCGGGTC;SVTYPE=TRA;CHR2=7;END=41497684;SVLEN=0	GT	./.	E497245	contig1	size224	2	cov1.35	123	0	0	0	0	30	0	0	0	0	163	78	45.6282051282051	56	59.4107142857143	47	22	49.2272727272727	18	60	4	0	5	0
20	57930541	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCCCCTCTCTCCCTCTCCCCCTCCCCCCCTCCCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCTCCCCCTCCCTCCCCCTCTCTCTCTCCCCCTCTCCCCCTCTCCCCCTCTCCCTCTCTCCCTCTCCCTCCCTCTCTCCCTCTCCCTCTCTCCCCCCCGCCCCCGCCCTCCCTCCCCTCCCCCCCCGCCCCCCTCCCCCCCCCCCTCCCTCCCCCCCCCACTCCCCTTCCCCCCCCCCCCACCTCCCCCCCTCCCTCCCCCCCCTTCTC;SVTYPE=TRA;CHR2=7;END=112880364;SVLEN=0	GT	./.	E2104843	contig7	size273	2	cov1.11	74	1	0	0	0	31	0	0	0	0	257	0	0	0	0	69	2	40	2	40	3	0	4	0
20	58889879	N	.	<TRA>	18	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCTCCCCTCCACCCATCCCTCCACCCACCCTCCCCTCCATCCTCCCTCCCCTCCGTCCACCCATCCATCCATCCATCCCCCCCCCCTCCCATCCACCCTCCCTCCCATCCATCCATCCTCCCATTCATCTATCCATCCATCCCTCGATCCTCCCATCCATCCATCCTCCCATCCATCCATCCATCCTCCCATCCTCCCTCCCCCCCTCCCTTCCTCCCTCCCTCCCTCCTTCCTTCCTTCCCTCCTTCCCTCCCCCCCTCCCCCCCCCCC;SVTYPE=TRA;CHR2=8;END=103933714;SVLEN=0	GT	./.	E3508781	contig1	size272	2	cov1.11	278	4	52	4	52	58	0	0	0	0	72	2	39.5	1	60	24	0	0	0	0	7	0	3	0
20	62123945	N	.	<TRA>	37.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTAGGGCGAACGGCTGGATGGATGGAGGGATGGATGGATGGGTGGATGGGAGGAAGGATGGATGGGTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGAGAGATGGATGGATGGATGGATGGACAGAAGGATGGATGGGTGGGGAGATGGATGGATGGATGGATGGATGGATGGATGGATAGAGAGAAGGATGGATGGTTGGGACAATGGATGGATGGATGGAGGGATCGATAGATGGATGGATGGATGGACAGTCGGAAGGATGGGTGGGGAGGCGG;SVTYPE=TRA;CHR2=14;END=70198809;SVLEN=0	GT	./.	E5024	contig1	size285	2	cov1.06	389	3	16.6666666666667	1	31	97	3	9	0	0	208	3	1.33333333333333	0	0	75	0	0	0	0	20	1	9	0
21	9551189	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATTGAATTTCAAGAATAAACATTTTCATTTCACCACATCTCATTTCCACTTAATTTCAATTACATCATAACATTTCATAATTTCCCTTCATGATTTCACTTCATATAAGCTCATTTATCGGATCATCAATTTTCATCTCATTTCATCTCATCGCATTTCATCATTACATCTCATTTCTTCTCATTTTATGTCATCATTTCATTTCATCATTTCATCCGATCTCATCTTATCCTTTTTTCTTGTCATCTCCTTTTATCTAATTTTATTATCTTCTCTCTTTC;SVTYPE=TRA;CHR2=15;END=21349125;SVLEN=0	GT	./.	E989408	contig1	size282	2	cov1.07	354	1	40	1	40	108	1	33	1	33	210	0	0	0	0	58	0	0	0	0	9	0	4	0
21	9551316	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATTGAATTTCAAGAATAAACATTTTCATTTCACCACATCTCATTTCCACTTAATTTCAATTACATCATAACATTTCATAATTTCCCTTCATGATTTCACTTCATATAAGCTCATTTATCGGATCATCAATTTTCATCTCATTTCATCTCATCGCATTTCATCATTACATCTCATTTCTTCTCATTTTATGTCATCATTTCATTTCATCATTTCATCCGATCTCATCTTATCCTTTTTTCTTGTCATCTCCTTTTATCTAATTTTATTATCTTCTCTCTTTC;SVTYPE=TRA;CHR2=15;END=21349125;SVLEN=0	GT	./.	E989408	contig1	size282	2	cov1.07	353	1	60	1	60	86	0	0	0	0	210	0	0	0	0	58	0	0	0	0	10	0	4	0
21	10775770	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGAATGGCACCGTTTTTTAATGATCCGGAGAAAACGGAGATGTACACTCTTTCCCTGCACGACGCGCATCCGAACGGAATGGAATGGATAGGAATGGAGTGGAACTGAAAAGAAAGAAAAGGAATCGAATTGAATGGAATGGAATGGACCCGCATAGAATGGAATGGCATCGAATGGAATGGAAGGGACTGTAGGGGAATGGAATAGAATGAAATGGAATGGAATTCCTTGAATCGAACAGAATTTAATGGAATGCAGTGGACACCACCGGAATCGAAAGTGAA;SVTYPE=DUP;CHR2=21;END=10860602;SVLEN=84832	GT	./.	E3378868	contig2	size284	2	cov1.06	2930	4	15	1	60	993	3	2.33333333333333	0	0	2873	34	0.147058823529412	0	0	995	15	4	1	60	5	0	4	0
21	10790155	N	.	<DUP>	5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCGATCTGGAGTGCAGTGGAGTGGAGTGGAGTGGAGTTCAGGGGAGTGGAGTGCAATTTAATGTAATGGAATGGAATGGAGTGCAGTGGAGTGGAGTGGAGTGGAATGGAATTGTTTGGAGGGGAGTGGAGTGGAGTGGAGGGGAATGGAGATCGGAG;SVTYPE=DUP;CHR2=21;END=10808048;SVLEN=17893	GT	./.	E2911016	contig1	size160	2	cov1.89	2015	50	3.96	2	60	665	14	0.214285714285714	0	0	592	17	7.41176470588235	1	60	213	4	31.25	2	60	14	1	17	1
21	10798149	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGAGTGGAGTGGGATGGAGTGGAGTGGAGTGGGGTGGAGTGGAGTTGAATTGAACGGAATGGACTGGAAGGGAATGGAATGGAGTGGAATGGAATGGAATGGAATGGAATGGAATGGAGTGGAATGGACTCGAATGGAATGGAGTGGAATGTAGTGGAGTGGAGTGAAGTGGAATGGATTGGAGAGGAGTGGAGTTGAGTGGAATGGAAGGGAGTGGAGTGTAATGGAGTTGAGTGGAGTGGAGAGGAGTGGTGTGGAATGGAGTGGAATCGAGTGAAATGGAATA;SVTYPE=DUP;CHR2=21;END=10858354;SVLEN=60205	GT	./.	E378833	contig1	size286	2	cov1.06	2748	7	0.285714285714286	0	0	886	1	60	1	60	1170	76	8.30263157894737	8	57	362	30	5.63333333333333	1	60	3	0	3	0
21	10801399	N	.	<DUP>	4.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATGGAATGGACTGGAATGGAATGGATTCGAATGGAATCGAATGGAACAATATGGAATGGTACCGAATGGAATGGAATGTAATGGAACGGAATGGAATGGAATAGAATGGAATGGAACTGAATGGAATGGAATGGAATGGAATGGAATGGAATAGAATGGAATGATATCGAAAGGAATGGGCTCGAATGGAATGGAATTGAGTGGAATGAATTCTAATGGAATGGAAACGAATGGAATGCAATGGAATGGAATTGAATGGAATACAATGGAATGGAATCGGA;SVTYPE=DUP;CHR2=21;END=10831475;SVLEN=30076	GT	./.	E258253	contig1	size282	2	cov1.07	3764	39	1.82051282051282	0	0	1221	10	1.9	0	0	18297	217	4.11981566820277	5	50.2	8231	97	4.07216494845361	2	40	11	0	10	0
21	10820713	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTGAAACGAAAGGGAGAGAATGGGATGGGAAGGGAAAGAAAGGAAAGGAAAGGAAAGAGAGGGAAAGGAAATAAAGGGAAGGGAAGGAATAGAGAAGAAAGGAAAAGAAAGGAAAGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGCAATGGAATGGAATCAACCGGAAGGGAATCGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATCGAATGGAATGGAAAGGAATGGAACGACAC;SVTYPE=TRA;CHR2=3;END=72768405;SVLEN=0	GT	./.	E297669	contig1	size266	2	cov1.14	1203	13	16.7692307692308	3	60	422	6	5	0	0	243	1	60	1	60	66	0	0	0	0	4	0	3	0
21	20702434	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTCTTTATATATATATTTATATATATTTCTTTATATATATATTTATATATATTTCTTTATATATATTTATATATATCAGTATATATTTCTTTATATATTTATATATCAGTATATATATTTCTTTATATATATTTCTTTATATATATTTCTTTATATATATATATCAGTATTTGTGTATG;SVTYPE=TRA;CHR2=11;END=42304035;SVLEN=0	GT	./.	E978364	contig4	size180	3	cov2.52	107	12	55	11	59.6363636363636	34	0	0	0	0	120	0	0	0	0	41	0	0	0	0	0	0	1	1
21	21960406	N	.	<TRA>	2	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTATATATATACCCTGGTCTGTGTATGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATACACACCCCGGAGTGGGTATATATATATACACCCGGGAGTGGGTATATATATATACACCCGGGAGTGGGTATATATAGATACACCCGGGAGTGGGAAGGTATATATACAGCCTGGAGGGGGGATATATGTACGCAGTAGTGGGTATATAGATTC;SVTYPE=TRA;CHR2=1;END=195466932;SVLEN=0	GT	./.	E2846990	contig1	size234	2	cov1.29	51	2	11	0	0	7	0	0	0	0	83	0	0	0	0	24	0	0	0	0	4	0	3	0
21	27039776	N	.	<TRA>	3	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAAAATGGAACAACATACTATACTAAAAGTTATAGGAATGTGGTCTCTCAAAATATCTTATTCTACTGTATTCAACACATTCAAAATAATAAAATATTCAAGATATTCAAAATATCTTATTGTCTTTTCTGTCTGCAGTTGACTACAGGGAACTGAAACCACAGAAAGCAAAACTGTGGATAAGGGGGATTACTGTATGGCATAAGATTCAAGTAAGGCAGACTGGAGAATAGCCATTGGAGTTGCATATAATTTAGGTTAATGGTGAGCATTA;SVTYPE=TRA;CHR2=13;END=110264901;SVLEN=0	GT	./.	E3248595	contig1	size274	2	cov1.10	490	15	0	0	0	170	9	0	0	0	870	6	0.166666666666667	0	0	326	4	0	0	0	5	0	8	0
21	33264612	N	.	<TRA>	47	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACAAAGCAAAATTACGACTAAAAAAAAAAAAAAAAAAAAAAACGGAACTCAATACAAAAAAATCAACTGAAAACAAAAGAAGGCAGTAATTTTAAAAACAGCAGGCAAGCCAGGTGCGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGATCAGGAGTTCAAGACCAGCTTGGCCAACATGGTGAGACCTCTGCCTCTATAAGAAAATACCAAAAAATTAGCCAAGCCTGGTGGCGCATGCCTGTAGTCCCAG;SVTYPE=TRA;CHR2=1;END=243066888;SVLEN=0	GT	./.	E475201	contig1	size281	2	cov1.07	95	0	0	0	0	34	0	0	0	0	139	14	54	13	56.3076923076923	36	0	0	0	0	0	0	1	0
21	45024792	N	.	<TRA>	3	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACACACAATATACACACCAAACACTGTGCACACACCACACACCACACACAATACATACCACACACCACATACACACCATGCACTACACACTACACACACCACACACACAACATACACACCAAACACCATGCACACACCACACACACACCAAACACTATACACACCACATACACACCACATACAACATATACACCAAACACTACACACTACACACACCACACACACAACATACACACCAAACACCATGCACACACCACACACACACCAAAAACTATACA;SVTYPE=TRA;CHR2=19;END=35789280;SVLEN=0	GT	./.	E3488574	contig2	size279	2	cov1.08	444	7	35.1428571428571	3	60	118	4	26.75	1	47	339	6	0	0	0	102	1	45	1	45	5	0	7	0
22	20342140	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCGCCCGCGTCGACCGTCCTGCGCCTCGCGGACGTGGTCGCCGCCCACGGCGTCGCCGACGGGGTCGCCGTCCACGGCCTCGCCGACGGGGTTGCCGTCCAGGGCAGCGCTAACGGGGACGCCGTCCAGGGCATCGCTAACGAGGACGCCGCCCTGGGCATCGCCAACGACGACGCCGTCCAGGGCATCGCTAATGAAGATGGAGTCCACGGTATCGATAACGAGGACACCGCCCAGGGCATCGCCAACTGGGACTCCGTCCAGGGCCTCGCCGACGGGGACGCCGTCCAGGGCCTCGCTGACTGGGTCGCCGTCCAGGGCCTCGCTGACGGGGACGCCGTCAAGGGCATCGCTGATCGGGACGCCGTCAAGGGCA;SVTYPE=DEL;CHR2=22;END=20714788;SVLEN=-372648	GT	./.	E1065623	contig5	size376	3	cov1.20	415	6	18.5	2	43	127	3	9.66666666666667	0	0	216	9	11.6666666666667	2	38.5	65	7	5.85714285714286	1	39	4	0	4	0
22	24293599	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTCACCCTGAGCTCCAGCGTTTGCTGGTCTGGCTGGCATACAGAGATGCAGCTGGAGCACAATTCAGTGGAGGAGGCAGGGCTATAACTAAGCAGTAGGGCAGAGAGCAGAGCCAGAGCCCCCTGGGCAGGCCAGAGGGAGGACCCTGCTCAGCTGACTCTTCCCAACTGCTGCCCTTGGTACAACCAGCTTGAGTCACCTGCTACAGAACAGGGGCTGGACACAGGAAAGATGGCCCTCTGATGGGGTCAAGGTCTGTGACCCAGTGACTAGCAGAGAGGCTTCCTCTTCCCTGATGCCTCCCAGATAGGGGCCTCAGAAAGCTG;SVTYPE=INV;CHR2=22;END=24331604;SVLEN=38006	GT	./.	E1616133	contig1	size328	4	cov1.84	129	0	0	0	0	31	0	0	0	0	124	3	0	0	0	21	0	0	0	0	4	0	6	0
22	29965541	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTAAAATGCAGAAGCTAGGCAAGAGGCCCTCAGGACTTCCGACACTGAAATTTACATCCTGGCTGGGCACAGTGGCTCACACCTGTAATCCCAACACTGGGAGGCTGAGGCAGGAGGATTGCTTGAGCCCAGTAGTTTGAGACCAGCCTGGGCAACGAGAGCAAAACTCCATCTCAAAAAAAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAAAAGGCAGAAATAAAAGAAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTC;SVTYPE=DEL;CHR2=22;END=29965946;SVLEN=-405	GT	./.	E1198404	contig1	size270	5	cov2.80	107	6	49.8333333333333	5	55.6	28	0	0	0	0	78	13	47.7692307692308	10	56.8	33	0	0	0	0	606	186	597	196
22	29987742	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTGGGCAACATGGCAAAACTCTTATCTCTACAAAAATGCAAAAATTGCCGGGCGTGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGAAGGATCACCTGAGGCTGGGAGTTCGAGACCAGCCTGACCAACGTGGAAAAACCCCGTCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGTGCATGCCTGGCCTCCATTTCTTTTTTAAAATTATTTTTATTTCTTTTGGGTGGGCAGGGTAGCTCATGCCTGTAATCCCAGCACTTTGGGAGGTGGAGGCAGGCAGATCACTTGAGGTCAGGAGTTTGAGACCATCCTGGCCAACA;SVTYPE=DEL;CHR2=22;END=29988104;SVLEN=-362	GT	./.	E1020755	contig1	size341	8	cov3.54	95	9	45.8888888888889	8	48.5	24	0	0	0	0	58	8	40.25	7	46	13	0	0	0	0	547	158	534	144
22	33759249	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATCATCTGACCCAGCATGGGGCTCCCGCTTTTCCCACAGGGGGCTGCTCAGGTTGACTCTCCTTTGGAGTAGCAGAGTGTGAGCTGAGGGAGACCAGGAGAGGCAGGGTCCCCCTGTCTACAGTAGTATCTGCACACATTCCAAAACCCAGAATGGTTGCCTGAAACCATGCAATAGTGCTGTATAAGTCCGTTTTCACGCTGCTGAAACTACTGATGCAGCTACTCGCAGGCTGAGCCCTGGGAATTTCTTTTTCAACAGTGGCCCCCATTAATTCTGATACAGGGTAGGTTTGGGGACCTCTGAAAGGGGGTGGTCACCTACCAGGCATGCTGTGGGAAGGGGGATTTCTGTACTGCGCAGAAGACTAGGTTTGAAGACCTCAAAGCTGCCTTCCAACCTGATTGGGAGCTCTCTTTATGCTATGTCAGTGATGAGTTTTCTCAACATTCTCATCAAGAACATCCCCATACTTGTTCTTCTTTTACTTGTGCTGTCCATATGTGTATGGACAGCTGCCCTATGAGCAGAGTCAGTTTTTCTCAGTGCTGCTCCCTCTAGTTAGTACTTGGTCCAGGCACTGGGATACTGATAGCTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGCCGCCCAGGCTGGAGTGCAGTGGCACTATCTCCGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTA;SVTYPE=DEL;CHR2=22;END=33838399;SVLEN=-79150	GT	./.	E2160416	contig1	size735	26	cov5.34	133	24	48.625	19	58.1052631578947	32	0	0	0	0	86	25	58.2	25	58.2	37	0	0	0	0	18	0	15	0
22	35566379	N	.	<TRA>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGAGCCTTCAGATGAAAGTTGAGATCCTACAGGACCAAGTAGGCGGAGATAATATTTCCTTTTAAATTATAGAATATAAGCCTTCTGCCCTTTCTGAATAGAACACTGTAAAATTATATCTATATACGTATATATATATATACACATATATACGTATATATGTGTATATATACACATATATATGCGTATATATGTGTATATATACACATATATATACGTAGATATGTATATATTTTTTAACCCACTGAGGGCGGATGATCTAAAGTAGAGGCGGTTTGGGAGGTT;SVTYPE=TRA;CHR2=7;END=39458677;SVLEN=0	GT	./.	E3966559	contig1	size286	2	cov1.06	94	20	59.5	20	59.5	24	0	0	0	0	154	1	60	1	60	35	0	0	0	0	3	4	0	0
22	38065350	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTACTGTTTTAGAGATGGTCTCACTCTATTGCTGAGTCTAGACTGTAGTGGTGCAGTCACGGCTCATTGCAGCCTCTAACTGCTGGGTTCACGTGATCCTCCTGCCTCAGCCTCCTGAGTAGCTAGGAGCACAGGCATATGCCACCACACCCAGCTAATTTTTTAAAAAATTTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGGGGCTGAGGCGGGTGGATTACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTATAAATACAAAAAAAAAAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGCGCCTGTAATTCCAGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGGTTGCAGTGGCTATTCACAGGCAGGATCCCACTGCTGATCATCGTGGGAGTTTTGACCTGCTCTGTTTCCGACCAGGGCCAGTACAGTCCTCCTTAGGCAAACTTGTGGTTGCCTCTCCCAGGAGGTCACCATATTGATGCCAATCTTAGCGCACTACAGCCCACGATTCCTGGGCTCAGGCGATCTTCCTGCATCAGCCTTCCAAAACGCTGAGATTACAGGCATGAACCACTGTGCCCAGCTTGTTTACATTTTTTAACTGAACCATCTGAGAGTATGTTACAGATGCTAACACAGTTCACCGAAAATTCTTCAGCTTGTATGACCTAAGAGCAAGGACAGCCTACACAGCCACCATCCAGGATTACACGAG;SVTYPE=DEL;CHR2=22;END=38065506;SVLEN=-156	GT	./.	E2285151	contig1	size786	31	cov5.96	169	12	52.1666666666667	12	52.1666666666667	41	1	60	1	60	120	18	49.6111111111111	16	54.125	38	0	0	0	0	552	163	556	164
22	43601849	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGTGTGTGGGGTGTGGGGGGTGTGGGGTGTGTGGGGGGTGTGGGGGGTGTGGGGGGTGTGGGGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGTGTGTGTGGAGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGAGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGAGTGTGGAGTGTGTGGTGTGTGTGGAGTGTGTGGTGTGTGTGGAGTGTGCGGTGTGTGTGGAGTGTGTGGAGTGTGGGGGGTGTGTGGTGGGTGTGGTGTGTGTGGTGGGTGAGGGGTGTGTGGGGTGGGCGGGGGGTGCGGGGGGGGGGGGGGGTGAGGG;SVTYPE=TRA;CHR2=7;END=157275053;SVLEN=0	GT	./.	E4466009	contig1	size411	3	cov1.10	100	2	4.5	0	0	20	0	0	0	0	142	2	30	1	60	67	2	60	2	60	3	0	16	1
22	43601896	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGTGTGTGGGGTGTGGGGGGTGTGGGGTGTGTGGGGGGTGTGGGGGGTGTGGGGGGTGTGGGGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGTGTGTGTGGAGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGAGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTGTGGAGTGTGTGGAGTGTGGAGTGTGTGGTGTGTGTGGAGTGTGTGGTGTGTGTGGAGTGTGCGGTGTGTGTGGAGTGTGTGGAGTGTGGGGGGTGTGTGGTGGGTGTGGTGTGTGTGGTGGGTGAGGGGTGTGTGGGGTGGGCGGGGGGTGCGGGGGGGGGGGGGGGTGAGGG;SVTYPE=TRA;CHR2=7;END=157275053;SVLEN=0	GT	./.	E4466009	contig1	size411	3	cov1.10	128	4	0	0	0	24	1	27	0	0	142	2	30	1	60	67	2	60	2	60	3	0	16	1
22	44936030	N	.	<TRA>	27.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTCTTCCCCCACACCCAACACCCCATCCACCCCCCCCCCCACCCATCCACCCACCCACCCATCCACCTGCCCCCCCAACCACCCACCCCTCCACCCACCCCCCCCCCCACCCATCCATCCATCCACATATCTACCCATCCACCCACCCACCTCCCCACCCACCCACCCACCCACCCTCCCGTCCATCCACCCACCCACCCACCCACCCACTCACCCACTCACCCACCCACCCATTAGCCCACCCACCTACCCATCCATCACCTATGCATCCACTCACCCATTCA;SVTYPE=TRA;CHR2=12;END=132890456;SVLEN=0	GT	./.	E3804408	contig9	size286	2	cov1.06	118	0	0	0	0	46	1	60	1	60	90	0	0	0	0	38	0	0	0	0	3	0	4	0
3	8907578	N	.	<TRA>	32	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTAATTAAAAGCTAACATTCAAGAAGTGTGTGTGTATGTGTGCGTGTGTGTATGTATGCATGTGTGTGTGTGTGCGCATGTGTGTGTGTGCGTGTATGTGTGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC;SVTYPE=TRA;CHR2=13;END=100129099;SVLEN=0	GT	./.	E3171030	contig1	size202	2	cov1.50	92	0	0	0	0	44	0	0	0	0	98	0	0	0	0	37	0	0	0	0	3	0	4	0
3	19776832	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGGGGGGGGGGGGGGGGGGGGGGGAAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGAAGGAGGGGGAGGGAGGGGGGAAGGAGGGTGGAGAGGGAGGGAGAAAGAGGGGGAGGGAGGGAGGAAGGAGGGAGGAGAGGGAGGGAGAAAGAGAGGGAGGGAGGGAGGAAGGAGGGAGGGGAGGGAGGGGGAAGGAGAGGGAGGGAGGGAGGAAGGAGGGAGGGGAGGGGGGGGGGAGGGGAGGGGGGGAGGGAGGAGGGAGGGGGGG;SVTYPE=TRA;CHR2=18;END=51387863;SVLEN=0	GT	./.	E1745032	contig1	size279	2	cov1.08	52	0	0	0	0	33	0	0	0	0	421	4	4.75	0	0	161	3	11	1	31	3	0	14	1
3	19776864	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGGGGGGGGGGGGGGGGGGGGGGGAAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGAAGGAGGGGGAGGGAGGGGGGAAGGAGGGTGGAGAGGGAGGGAGAAAGAGGGGGAGGGAGGGAGGAAGGAGGGAGGAGAGGGAGGGAGAAAGAGAGGGAGGGAGGGAGGAAGGAGGGAGGGGAGGGAGGGGGAAGGAGAGGGAGGGAGGGAGGAAGGAGGGAGGGGAGGGGGGGGGGAGGGGAGGGGGGGAGGGAGGAGGGAGGGGGGG;SVTYPE=TRA;CHR2=18;END=51387863;SVLEN=0	GT	./.	E1745032	contig1	size279	2	cov1.08	61	3	40	2	60	49	0	0	0	0	421	4	4.75	0	0	161	3	11	1	31	3	0	14	1
3	22097802	N	.	<TRA>	30	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAATATTTTAAATATTTTAAAAATGTTTTAAAACTCTGAAAACTTTATAAAATATTAAGCATAATCACATTAATTGCTGACATACTTCCTAATTAATGAGGAA;SVTYPE=TRA;CHR2=4;END=125230275;SVLEN=0	GT	./.	E608395	contig2	size205	3	cov2.21	120	26	3.30769230769231	2	40	44	5	0	0	0	147	8	22.5	3	60	43	1	37	1	37	12	0	7	0
3	25400602	N	.	<TRA>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTCAGGATGATGCTGGTCTCATAAAATGAGTTAGAGAGGAGTCACTCTTTTTCTATTGTTGGGAATAGTTTCATAAGGAATGGTACCACTTCCTCTTTGTACCTCTGGTAGAATTTAGCTGTGAATCCATCTGGTTCTGTGAATCCATCAGGTGGGGTGGCCAGTCCGGGGCCCACGTCGGCCCAGCCGCCG;SVTYPE=TRA;CHR2=12;END=72666892;SVLEN=0	GT	./.	E3103918	contig4	size192	2	cov1.57	383	48	38.4791666666667	35	48.3714285714286	34	0	0	0	0	98	42	50.3809523809524	41	51.0243902439024	24	1	40	1	40	66	0	94	0
3	25401059	N	.	<TRA>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAACTTCCAATACTATGTTGAATAGGAGTGGTGAGAGAGGACATTCTTGTCTTGTGCTGGTTTGCAAAGGGAATCCTTCCAGGTTTGCCCATTCAGTATGATATTGGCTGTGCGTTCTCATTAATAGCTCTTATTATTTTGAGATATGTTCCATCAATACCTAGTTTATTGAATGTTATTAGCATGAAGGGTTGTTGAATTTTATTGAAGGCTTTTCCTGCATCTAATGAGATAATTATGTGGTTTTCATCATTGGTTCTGTTTATGTGATGGATTACATTCATTGATTTGCATATGTTGAACCAGCCTTGCATCCCGGGGATGAAGCCGACTTGATCATGGTGAATAAGATTTTTAATGTGCTGCTGGATTCAGTTTGCCAGTATTTTATTGAGGATTTTCGCATTGATGTTCATCAGGGATATTGGCCTGAAATTTTCTTTTTTTTTTTTAATCTCTGCCAGGTTTTGGTATCAGGATGATGCTGGTCTCATAAAATGAGTTAGAGAGGAGTCACTCTTTTTCTATTGTTGGGAATAGTTTCATAAGGAATGGTACCACTTCCTCTTTGTACCTCTGGTAGAATTTAGCTGTGAATCCATCTGGTTCTGTGAATCCATCAGGTGGGGTGGCCAGTCCGGGGACCACGTCGGCCCAGCCGCCGTCGGAGGAGGAGCGGGAGCCGTGGGAGCCGTGGACGCAGCTGCGCCTGTCGGGCCACCTGAAGCCGCTGCACTACAATCTGATGCTCACCGCCTTCATGGAGAACTTCACCTTCTCCGGGGAGGTCAACGTGGAGATCGCGGCATCAAATCTGTTGAAATGTATATTATAGCCATATCCTACATATACATGCAATGGTATTTCATGCAGCTACAAAAATAATGGTATTACTGTTTACGTGCTTATATAGAAGAAGTTCTCTGCTTATTTTTTTAACTCTTATTTAAACTTAACTTGTCATACTTTGTTATTAATATACAAAGACAATAAACTTTTAAAACACTAACATCACAATTAAAAGAACTAGAGAATCAAGAGCAAACACATTCAAAAGCTAGCAGAAGACAAGAAATAACTAAAGTCAGAGCAGAACTGAAAGAGACAGAGAATTGAAAAACCCTTCGAAAAATCAATGAATCCAGGAGGTGGTTTTTTTTTTAAAAATTAACAAAATAGATAGACCACTAACCAGACTAATAAAAAGAGAAGAATGAAATAGACACAATAAAAAATGATAAAGGGGAGATCACCACTGAACCCACAGAAATACAAACTACCATCAGTGAATACTATAAACACCTCTATGCAAATAAGCTAGAAAATCTACAAGAAATGGATAAATTCTTAGACACATACACCCTCCAAAGACTAAACCAGGAAGACGTCGAATCCCTGAATAGACCAAAAACAAGTTCTGAAATTGAGGCAGTAACTGATATCCTACCAACCAAAAAAAGCCCAGAACCAGATGGATTCACAGCTAAATTCTACCAGAGGTACAAAGAGGAAGTGGTACCATTCCTTATGAAACTATTCCCAACAATAGAAAAAGAGTGACTCCTCTCTAACTCATTTTATGAGACCAGCATCATCCTGATACCAAAACCTGGCAGAGATTAAAAAAAAAAA;SVTYPE=TRA;CHR2=10;END=60477224;SVLEN=0	GT	./.	E3103918	contig1	size1634	168	cov15.53	380	30	30.1	16	48.8125	42	0	0	0	0	88	59	40.9322033898305	42	55	30	0	0	0	0	88	0	153	0
3	26650960	N	.	<TRA>	30	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTGTGTGAGATTTTTATTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGTGAGCTTTATCAGGCAATTTGGTACAATAAAGTTTAGCTTTTGGTTGAAAATATTGAATTATTATAGTCACTGTTGAGAATTATTTTGCTACATCACGTTTGTTTCTTT;SVTYPE=TRA;CHR2=1;END=106823659;SVLEN=0	GT	./.	E2480976	contig2	size215	2	cov1.40	410	21	49.3333333333333	18	54.8333333333333	37	0	0	0	0	37	27	52.4074074074074	26	54.2692307692308	22	13	55.3846153846154	13	55.3846153846154	3	0	5	0
3	26663922	N	.	<INV>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACCTTTCCAGTAAAGGGGCTGTGAGTCTAACTGTATGTGTGGTTCCCTCCACCACACCCTAAATCAAAAGTTCCATCCCTGGAGTCTCTTTAATTCTAGAGACACTGAGATTTAGCTCATACAGAAGGAGAAAATGACCTTCAACTGGATAAGCTTTCCTTGAGTACCCATTAGATACAAAACACTGCTGGATGTTGCAGTGAGAACAAACAAACAAAAAGCACAGGGAATACTCATATGTGAGTGAAGAGATAAATCTATAAATATATAAGTTCCGCAAGTGATTGGCAAATAAAATTCTGAGAGGGCAAAGAGAGGGGAAAGATTTCTGCCTCGAGTCAGAGGACTGGGGTAGCGGAAAAAAGCTTTAGAAAAAAAGGTGGTATTTGTAGAGTCTGGAGAGGCGGGTTCCTCTGCCCCAAACTGGTGTCTACTGCAGATATGGTAAATAATTAAAATCATGAAATAAGAACATCACTAAAACCATTAATTTGACTTACTCTTAAAACACACGCGCGCACGCGAGCGCGCTCGCACACACACACACTGGCGTGCGCGCGCTTTTTTAAGGGGCCTATAGACTCCATTTCGGCTGCAGGTTAAAGTCATCCCAGGAAGGAGAAAGGAAAATTGAATTCCACCTTCTTCTGATTTAGAAAGCTAGATTGGTTGAGGATCGGGATCAGGGACCACAACTCAACCCCGAAACTTTGGGCTTCCAGAACTGCAGGGGAAACTGATTCTGAGATCTGACAACGGACCCTGGGGCGGGAGGGGGGTACCTTATTCATAACCCTCCCTCACAATAGCGGAGCACAGTACTCAGCACCCAGTAAACACTCATTTGTCGAATTGATTTTAAGCCTCCGCTTTTCCCCCAAGGAGGGCAATCAATCCCTTGCACGTTTTGCTCCTTTCACCAGCTTAATTCAGCTCTGATCTCAGTAGTTAGAAAAATAGGAGAAAGAATGGGGCCATAGCCTGCTGCAAGTAGAGCTGTGTAAGGGGGTGCGAGGAAGGCAGGCGAGAGCAGCAGAGGGAGTTAATACTCCTACCTCAGCTGGTCTCCGGCAGCCAACGCTCAGCCCCCGCCTCCTCTCTCCATTCCGGACCCCGCAACCGCGAGGCGAGAGAGCAGCGCCGGCGAGGCACTGGCTGGGCTCTGACTGTCACGTTAATTCCCTGCTGCTTTTTCTAGTCCCCAGCCGCCTCGCCCCTCCTCCCTCATTCCCAGCCTGGGTTTGGAGGCGATTTCCCTCTATTGACTGAGCCGACTGCATCTCTGGGCAAGCGGCGCTTTGCCTCTCTCCTGTCTTTGTCTGCTCTTCCTGCAAGGCTACGGCGCCTGGAGCAGGGTCTGCAGCGGCCGCCGCAGCAACGCGAGCCAAGTCGTGCCCCGCACGGCCGCCCGGGGCCGCACCCTCGCTCGGTGGCGGCGCCCGAAGACGCCAGCCGCGCCACGCCTCCTTGGGGGAAAAGCGGAGGCTTAAAATCAATTCGACAAATGAGTGTTTACTGGGTGCTGAGTACTGTGCTCCGCTATTGTGAGGGAGGGTTATGAATAAGGTACCCCCCTCCCGCCCCAGGGTCCGTTGTCAGATCTCAGAAT;SVTYPE=INV;CHR2=3;END=26664499;SVLEN=576	GT	./.	E2489092	contig1	size1609	148	cov13.89	335	99	58.040404040404	99	58.040404040404	33	0	0	0	0	154	107	58.8691588785047	107	58.8691588785047	19	0	0	0	0	1484	159	892	141
3	27007856	N	.	<DUP>	42.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACTAAAAATACAAAAAAAAAAAAAAAAAAAAAAATTAGTCAGGCACGGTGGCTGACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGGGGATCTCCTGAGTTCAGGAGTGCAAGACCATCCCGGGCAACATGGTGAAACCCCGTCTCT;SVTYPE=DUP;CHR2=3;END=153162700;SVLEN=126154844	GT	./.	E1536812	contig2	size154	2	cov1.96	161	9	3.44444444444444	0	0	48	2	0	0	0	122	73	45.4657534246575	60	52.1166666666667	31	22	45.0909090909091	18	53.2222222222222	13	1	3	0
3	49283352	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATAATTTACAAAAATTAATGCCTTTTTGTGGCCTAAAAATTAATCCCCAACTGTCTGCATAGAAGCACTGTACTGTCTGCTGGATTTCAACCTGGGCATCCCACACACAGGGCATATGCATCTGTTTAGAAACTTGTTCTGGGGCCGGGCACAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCTAAGGCGGGAGGATCACTTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAAAATGACGAAAGCCCGTCTCTACTAAAAATGCAAAAAAAATTAGCCAGGCGTGGTGGCAGACACCTGTAATCCCAGCTACTTGG;SVTYPE=DEL;CHR2=3;END=49283795;SVLEN=-443	GT	./.	E2482455	contig1	size323	5	cov2.34	131	8	50.875	8	50.875	43	0	0	0	0	127	17	46.7058823529412	14	53.7857142857143	37	0	0	0	0	694	237	694	233
3	49520642	N	.	<TRA>	12	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGAGGGTGGTGGCTGTTGAAAGGATCCCAGATTCTGCATTTCTTCTGGACTTGCATCATTTATCCAGCCCAGTAGCTATTTTTCTTTTTCTTTTTTTCTTTCTTTCTTCCTTTTTTTTTTTTTTGACAGAGTTTTAGTCTTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAA;SVTYPE=TRA;CHR2=X;END=897182;SVLEN=0	GT	./.	E3612995	contig2	size207	2	cov1.46	157	1	9	0	0	50	2	36.5	1	60	79	0	0	0	0	60	0	0	0	0	5	0	5	0
3	51212071	N	.	<DUP>	3	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCAGGAGACATAGGAGGCATGACTGCTTTACTTCAGAAATTTGAGGTTACAGTGAGCTGTGATTGCACCACTGCAATCTGTCCCAGGAGATAGAGTAAGATCCTGTGTATAAAATGAAAAAATAAAGAAAAATAAAATGATTTTAAGTTAAAAAATAATTCATAGATCTCCACTTCTTTAGGGTCACTTGAATATATATTTTTCTCGTTTCATTAGGCTATATTTCCTGGTTGCTTTTAAGTACTGTGGTTTTGTTAAGGTTTTGGTCAATTAAGAAACCACTACCTATTTTATCCTTTATGAAAA;SVTYPE=DUP;CHR2=3;END=57785693;SVLEN=6573622	GT	./.	E2007763	contig1	size307	3	cov1.48	699	33	17.4545454545455	7	31.1428571428571	191	8	12.5	1	29	160	19	0.631578947368421	0	0	57	7	0.285714285714286	0	0	5	0	5	0
3	59125549	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAACCTGTGCTTCAATTAGGAATTGATCAATTG;SVTYPE=TRA;CHR2=8;END=92677072;SVLEN=0	GT	./.	E2834631	contig1	size248	2	cov1.22	168	10	39.6	10	39.6	43	2	40	2	40	147	51	44.1176470588235	38	58	39	14	52.2857142857143	12	60	12	0	14	1
3	60132754	N	.	<DEL>	52.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGAGCTAGAGAGAATGGGGGTAGCTACGTTCAAACCATTTGGATGAGGCAGGACTCGCCTGAAATGGGGTAAGTGTAGCCCTCCTAAGAAAGAAGCACTGTGCGGATGAACATCATGAACACCATCCAAGTTTCAACATGTCTGAGATTAAATCTGCAGCAAAAGTTTACTCCATTTCTGGGTGTGTAAAGCAGCTAAAACTTCCTACCATGCGTCCGCTATCCATGGAAATCCGGAACAAAAGCTTAAGATCCAAGAAAATAAAATGTGTTTTGAAGAAAAATATGCTCTTGCAACATAAAGAAGCTGTCTTCAGTTACAAATAGATATAAAATGTGAAGATATATAATTGCTGCATAAATTTATTAATAGAAGTGCTAATGCCATAAATCGTACATCTCCATTTTGACACGCAATCCTTTTGAGGTTTGAATCCAGGGTCTGAGCTCTTAACTCTATACTGCCTACATACATACATACATACATACATACATACATACATACATACATACATACATACATATATACATACATATATAAATTAACCTTTCTTATCCTACT;SVTYPE=DEL;CHR2=3;END=60204543;SVLEN=-71789	GT	./.	E203918	contig1	size561	17	cov4.58	165	15	53.7333333333333	13	57.6923076923077	36	0	0	0	0	108	7	52.1428571428571	7	52.1428571428571	35	0	0	0	0	24	0	25	0
3	60872125	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAAGGCGCCTATGCTAATAAGAAAGTGATCCAATATTCATGAGAAGAACTTGAAAAACTATTATTTTTGCCTGCAATCTTCTTGGCTTTTCCATAATTAATATGTCATTATCATCAGAAGGCTAAGAGATCAAGAGTGGTAAAAGCCACAAATCAAGACTCAATATCATTTCGTTGACTTGAGAGTGATGGAGAATATGCAGATTAACTTAAAGTGTGCCATATCTGTGGCTGTTATATTCTGAATAACACACACACACAAATGGAGAACCCATTCTTCCAGTATTATAAACTATCATACAATATGTATGACAGAAAGATGATTATTCATCAGTTGCAAACATAGACTGGCTATGGATATAAGAATTTGGCAAAAATCAACCAAAGCAGTGTGTGAGAATCTACTGGCTATCCAGGATTTACAATCAAGAGTAGTGATTATTTTATTCATATTTATAAATTACATGTTACATGTCCTTTATATCAGTAAAATTAATAATAAACACACATGCAAGCATGCACATTAGGGCATGCATGCACACACATACACATATTTTTCCTTGAGAGCCAGCTGTTAAACATTTACCAGCATACCACTAAATTGACCATTATTTTAAACTAAGAGGAACCTAGAAGCTCTTAAGCAGAGCCCTAGGCTCATCTTCAAATCACTAAGGTTGGGTTATAAATGGTTTTAGCTTCAGGTAAGGCTACC;SVTYPE=DEL;CHR2=3;END=61013213;SVLEN=-141088	GT	./.	E4166359	contig1	size714	39	cov8.25	157	33	58.8484848484849	33	58.8484848484849	62	0	0	0	0	147	37	59.5675675675676	37	59.5675675675676	43	1	60	1	60	20	0	20	0
3	63661065	N	.	<TRA>	30	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTGTGGTCCTAGCTACTCAGGAGACTGAGGCAGGAGGATCACTAGAGCCCAGTGAGCTATAATTGTGCCGCTGCATTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGAT;SVTYPE=TRA;CHR2=19;END=10298694;SVLEN=0	GT	./.	E60231	contig12	size188	2	cov1.61	156	2	0	0	0	38	0	0	0	0	126	0	0	0	0	49	0	0	0	0	3	0	12	1
3	68176842	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCATCCCACCACCACCACCATCGTCATCACTATCATCATCACCCCACCACCATCATCACACCACTACCATCATCACACCACCACCACCGTCACACCACCACCACCATCATCATCACTACCACCATCATCATCACACCACCACCACCATCGTCATCACTATCATCATCACACCACCACCATCATCACACCACTACCATCATCACACCACCACCACCGTCACACCACCACCACCATCATCATCACTACCACCATCATCATCACACCACCACCACCATCACACCACC;SVTYPE=TRA;CHR2=10;END=125013981;SVLEN=0	GT	./.	E2756384	contig2	size286	2	cov1.06	327	1	60	1	60	74	0	0	0	0	306	4	32.5	2	51.5	137	2	38	1	60	13	1	3	0
3	72768390	N	.	<TRA>	2	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTTTCCTTCTACTCAATTTCATTACACGCCACTCCCTCCCCCTCCATTTCCTTTCTTTCCCTTCCCTTCCCTTCCCTTACCTTCCATTCCATTCCATTCCATTCGATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATGCCATTCCACTCGGGTTTATTCCATTCCTTTCCATTCCATTCGGGTTGAATCCATTCCATTCCATCCCGTTCCATCCCATTCCATCCCATTCTGTTCAGGTTAATTCCATTCCGTCCCTTTCCTTTCAA;SVTYPE=TRA;CHR2=20;END=29814112;SVLEN=0	GT	./.	E3328092	contig1	size282	2	cov1.07	125	0	0	0	0	40	0	0	0	0	3246	143	1.04195804195804	1	60	1037	44	1.56818181818182	0	0	5	0	8	0
3	74801651	N	.	<TRA>	19.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCACCAAGTGCTCAGGGGTTCCCGAGACACAGTGGGGAGTGAGGTTGAGGCCGTGGTGGAGGCCCTGGGCCTGGGAGTGGGTCCTGCCCGGCTGTGTGAGGGTGGGGGGGGTGCAGTCGGCTGCCTCGGGGACGTGGGGCACGGGGATCTCATCACCGCCATTGCTGCTCCTGCAGCCACTCCTGCCACCACTGCCGGCACCTTCCTGCTGCAGCTGGTGTGATGGCAGCAGCCGCTCCAGACACTCCACATGCTGCAGCCATCACTGCCTTTGGCATGTTGAAGGGTACAGTTCAGTGGCACCGAGCCCATTCACAACGTGAATTCATCACCACCATCCATTTCCAGAACACTTTCCATCTTGCACACCTGAAACTCTA;SVTYPE=TRA;CHR2=2;END=161504861;SVLEN=0	GT	./.	E3443379	contig2	size382	4	cov1.58	143	18	3.55555555555556	0	0	30	2	0	0	0	202	1	60	1	60	70	0	0	0	0	4	0	3	0
3	74801697	N	.	<TRA>	19.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCACCAAGTGCTCAGGGGTTCCCGAGACACAGTGGGGAGTGAGGTTGAGGCCGTGGTGGAGGCCCTGGGCCTGGGAGTGGGTCCTGCCCGGCTGTGTGAGGGTGGGGGGGGTGCAGTCGGCTGCCTCGGGGACGTGGGGCACGGGGATCTCATCACCGCCATTGCTGCTCCTGCAGCCACTCCTGCCACCACTGCCGGCACCTTCCTGCTGCAGCTGGTGTGATGGCAGCAGCCGCTCCAGACACTCCACATGCTGCAGCCATCACTGCCTTTGGCATGTTGAAGGGTACAGTTCAGTGGCACCGAGCCCATTCACAACGTGAATTCATCACCACCATCCATTTCCAGAACACTTTCCATCTTGCACACCTGAAACTCTA;SVTYPE=TRA;CHR2=2;END=161504861;SVLEN=0	GT	./.	E3443379	contig2	size382	4	cov1.58	305	11	11.6363636363636	0	0	83	2	9.5	0	0	202	1	60	1	60	70	0	0	0	0	4	0	3	0
3	77338430	N	.	<DEL>	31	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCGGGTAAACGGGTAAGCTGAGGCTAGATCACCGAAGAAATAAAGTAAAATTGACGGCTTAATGGGTAAGCTGAGGCTAGATCACCCCAGACATAACGTAAAATTGACGGTTAAACGGGTAAGCTGAGACTAGATCACCCCAGACATAAAGTAAAATTGACGTTTAAACGGGGACACTGAGGCTAGATCACCCCAGAAATTAAGTAAAATTGATGGTTAAATGGGAAGTTGAGGCTAGATCACCCCAGA;SVTYPE=DEL;CHR2=3;END=77340928;SVLEN=-2498	GT	./.	E108874	contig1	size250	2	cov1.21	181	0	0	0	0	45	0	0	0	0	134	3	57	3	57	28	0	0	0	0	3	0	11	0
3	90321422	N	.	<DEL>	5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGAATGCATACATCGCAAAGAAGTTTCTCAGAATGTTTCTGTCTAGCCCCCAAAGCACTCCAAATATCCATTTGCATATTCTACAAAAAGACTGCTTCCAAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAACATGGACAGCCTTGCTATCATACCCCGTAGAGTCTTCTCGCAGAGACGAAACATATTTACAGGATGTGTGCACTGGCGTTTTTAGATG;SVTYPE=DEL;CHR2=3;END=90354183;SVLEN=-32761	GT	./.	E1352498	contig11	size303	3	cov1.50	1117	1	26	0	0	378	0	0	0	0	728	1	0	0	0	218	0	0	0	0	3	0	4	0
3	90332250	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCAAGCAATACCGAGCAGTTTCTCAGAATTTTTCTGTCTATTTTTTATTTGAAGTTATTTCATTTTCCACTACAGGCCGTAATGCACTCCTAATATCCACTTGCAGATTCTACAAAAAGACTGTTTGCAAACTGCTCAAACAAAAGAAAAGTTCAACTCTGTGAGTTGAATGAGCACATCACAAAGAAGTTTCTCAGAATGCTTCTGT;SVTYPE=DUP;CHR2=3;END=90377368;SVLEN=45118	GT	./.	E2973695	contig1	size208	2	cov1.45	527	436	2.52752293577982	16	48.3125	153	143	2.30769230769231	4	42.75	292	23	3.82608695652174	1	60	115	7	0	0	0	5	0	5	0
3	90332253	N	.	<DUP>	19	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACCAGAGCCCCAAACGCCCCAAAAATACCCGTTACAGATTCTACTAAAAGACTGTTTCCAAACTCCTCAATGAAAAGAAAGTTTCAACTCTGTGAGATGAATGCACACATCACAAAGAAGTTTCTCGGAATGCTTCTGTCTAGTTTTTATGTGAAGATATTTCCTATTTCACCATAGTCCTCAAAGGGCTCAGAAATGTCCCTTTGCAGATTCTTTGAAAAGACTGTTTCCAAACTACTGAATGCAATGAAAGGTTTAACTCTGTGGGATGAAGGCACATATCA;SVTYPE=DUP;CHR2=3;END=90340523;SVLEN=8270	GT	./.	E4446056	contig1	size285	2	cov1.06	994	33	13.0909090909091	9	40.7777777777778	307	6	9	1	37	192	4	12.25	0	0	53	1	18	0	0	9	0	8	0
3	90332390	N	.	<DUP>	19	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACCAGAGCCCCAAACGCCCCAAAAATACCCGTTACAGATTCTACTAAAAGACTGTTTCCAAACTCCTCAATGAAAAGAAAGTTTCAACTCTGTGAGATGAATGCACACATCACAAAGAAGTTTCTCGGAATGCTTCTGTCTAGTTTTTATGTGAAGATATTTCCTATTTCACCATAGTCCTCAAAGGGCTCAGAAATGTCCCTTTGCAGATTCTTTGAAAAGACTGTTTCCAAACTACTGAATGCAATGAAAGGTTTAACTCTGTGGGATGAAGGCACATATCA;SVTYPE=DUP;CHR2=3;END=90340523;SVLEN=8133	GT	./.	E4446056	contig1	size285	2	cov1.06	1138	6	32.3333333333333	3	53.3333333333333	354	3	43.3333333333333	3	43.3333333333333	192	4	12.25	0	0	53	1	18	0	0	9	0	8	0
3	90353974	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCACTCCTAATATCCACTTGCAGATTCTACAGAAAGACTGTTTGCAAACTGCTCAAACAAAAGAAAAGTTCAACTCTGTGAGTTGAATGAGCACATCACAAAGAAGTTTCTCAGAATGCTTCTGTCTAGTTTTTATGTGAATATATTTCCTTTTCCACTATAGGCCGTAATGCGCTCCAAATATCCACCTGGAGATTCTACAAAAAGACTGTTTCCAAACTGCTCAATCAAAAGAAAAGCTCAACTCTGTGAGTGGAATGAGCACATC;SVTYPE=DEL;CHR2=3;END=90441451;SVLEN=-87477	GT	./.	E1712621	contig1	size268	3	cov1.69	1461	47	9.31914893617021	6	43.5	561	20	5.75	1	45	292	5	0	0	0	83	1	53	1	53	3	0	3	0
3	90453627	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTCTACTTTTTAGGTGGGGGTATTCTTGTTTCCAACAAAGGCCTCAAAGTGGTCCCAATCTCCTATTGCAGATTCTACAAACAGAGTGTTTCACACCTGCTCTCTCAACGGCACGGTTCCCCTCTGTGTGTTGAATGCACACATCACAAACAAGTCTCTGAGAATACTTCTGTGTAGTTTTTCTTCGAAAATATTCCAGTTTCCAACGAAGGCCCAAAAGCAGTCCAAATAGCCGCTTGCAGATTCTGCTAGAAGAGTGTTTCAAAACTGCTCTAT;SVTYPE=DEL;CHR2=3;END=90491463;SVLEN=-37836	GT	./.	E658615	contig2	size277	2	cov1.09	282	220	9.13636363636364	22	37.5454545454545	64	61	8.9672131147541	8	37.25	358	1	0	0	0	125	1	3	0	0	4	0	4	0
3	95035898	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTCTGTCTTAGTCTCTCTCTCTCTCTCTCCCTGTCTGTCTGTCTCTCTCTCTCTCTCCCCCTGTCTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTGTCTCTCTGTCACTCTCCCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTGTCTGTGCCTATCTTCTGTCTTACTCTCTTTCTCTGGCTGACTGCCTGTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTGTCTCTCTCTACCTCTCTCTCTCCCTCTCTGTCTTTTTGTGTCTGTGTCCTTC;SVTYPE=TRA;CHR2=X;END=3053114;SVLEN=0	GT	./.	E2767402	contig2	size285	2	cov1.06	181	0	0	0	0	38	0	0	0	0	243	122	1.47540983606557	0	0	76	40	2.325	0	0	3	0	11	0
3	95874517	N	.	<INV>	30	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTGAAAGAAATGTGGAATTATGTGAAGAGACCAAATCTATGACTGATTGGTGTACCTGAAAGAGATGGGGAGAATCGAACCAACCTGGAAAACATATTTCAGGATATCATCCATGAGAACTTACCCAACCAAGCTAGAGAGGACAACATTCAACTTCAAGAAATGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGA;SVTYPE=INV;CHR2=3;END=163464479;SVLEN=67589963	GT	./.	E3444345	contig1	size243	3	cov1.86	192	62	28.2903225806452	29	58.9310344827586	57	10	36	6	60	193	26	6.80769230769231	3	59	31	4	0	0	0	7	0	9	0
3	107273555	N	.	<TRA>	32	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGTATGGTTACTTGCGGAGTTTAACTTATGCATTTTTTATTCTTTAATTTATTCTGTCTAGTTTCTGTAGCTCTTTGATTCGTGAGTACTTATTTTCTAGATTTCTAGAAAGATCATGCAATTGCACTCCAGCCTGGGCAACAGGGGCGAACCCCCGCCCCAAAACAACGACGACAACAACAACAACAACAGCAAAAAACGACTGTTTCTACGATAGATACATAAGATTGATATGGGTGCAGATCGCAGGAGCGTCGTGTCGGGAGGGAG;SVTYPE=TRA;CHR2=1;END=21070557;SVLEN=0	GT	./.	E2589997	contig1	size270	2	cov1.12	185	11	56.7272727272727	11	56.7272727272727	42	1	60	1	60	112	0	0	0	0	27	0	0	0	0	2	0	1	0
3	128604825	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTAAAAATACAAAAATTGGCCGGGCATGGTGGCGGGTGCCTGTAATCCCGGCTATTCAGGAGGCTGAAGCAGGCGAATTGCTTGAACCCAGGAGGCAGAGATTGTAGTGAGCCAACATTGCACCACTGCAACCTCTACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTATCTGGGACTGCAGGCATGCACCACCACGCCCGGGTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCAGGTTGGTCTTGAACTCCTGACCTCATGATCTGCCTTCCTCAGCCTCCCCAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCAGCTAATGAAAAATATTTTGAAAAATAATCAGGCCAGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTACGGAGACTGAGGTGGGTGGATCACCTGAGGTCGGGAGTTCGATACCAGCCTGACCAACATGGAGAAACCTCAT;SVTYPE=DEL;CHR2=3;END=128605019;SVLEN=-194	GT	./.	E2591256	contig1	size488	16	cov4.95	130	15	42.9333333333333	11	49.8181818181818	39	0	0	0	0	91	9	39.3333333333333	9	39.3333333333333	26	0	0	0	0	523	170	597	194
3	130081127	N	.	<TRA>	30.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCGGCCACTGGGGAGTCTGGGTCGGCAGAGACACGTGAAGCGAGGGTTGGCGGGCCGGAGGTGGGGTGGGACTGCTCACCTGCATTCCAGCCTGCTTGTCCGTGCGAGCTCTTGTCTCAAAAAAAAAAAAAAGAAAAAAAAAGTTATCCAGGAAAATCTGGACCCTCGCCTAATTCTTCTCCATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTAGGAAAAATAGCTTCAAAATAATACACTT;SVTYPE=TRA;CHR2=7;END=131257722;SVLEN=0	GT	./.	E3976122	contig6	size266	2	cov1.14	143	1	0	0	0	30	1	0	0	0	154	14	36.7142857142857	10	48.7	33	3	41.6666666666667	2	51	5	0	3	0
3	137861723	N	.	<TRA>	38	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACATTTCGCAAAAGAAGATATACAAACAGCCAAGAAACATATGAAGAAATGCTTGGCCGGGCGCAGTGGTTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTAGATCACCTGAGGTCAGGAGTTTGACACCAGCCTGGCCAACATGATGAAAC;SVTYPE=TRA;CHR2=X;END=40391849;SVLEN=0	GT	./.	E2882740	contig2	size162	2	cov1.86	176	18	47.9444444444444	15	55.4666666666667	51	1	60	1	60	99	2	46.5	2	46.5	24	0	0	0	0	1	0	2	0
3	149292637	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGGTAGCCAGGATGGTCTTGGTCTCGATATCCGGCCCCCTGATCTGCCCACTTCGTCTTCTCAGAGTGCTGGGATTAGAGGCGTGAGCCACCGCCCCCGGCCTGTTCTATAAATTTCTAAGTGATACACATAAAGTTTATTTTAAAAATTACATCACACTACATTAAAATTTACTCTTTCTCCAGGTGTATTCCATCTATCTATCTATCTATCTATCATCTATCATCTATCTATCTATGACAAGGCCTTGCTCTGTCACACAGACTGGAGTTCAGTAGCTCAATTATGGCTCACTG;SVTYPE=TRA;CHR2=4;END=167499654;SVLEN=0	GT	./.	E2236877	contig1	size335	3	cov1.35	650	54	0	0	0	183	11	0	0	0	152	2	0	0	0	49	1	0	0	0	6	0	4	0
3	152178421	N	.	<INV>	9	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGTGAGGCAGCCTGACACTTGCTGATCTTGTCTTTTAAGTGTGGAGTCCTCTATGGAGTGGGTTGGGTACTTACTAGCTGGCCTCTGCCAGCTGTTTGGCTGCCTCAGTTTCTGCCCTTCACAGACATGCTGGCCACCTGGTGTGACATTCAGTGGCCTTGTTTGCAGCTAGTATGATGAGACAAGTGGATCAGGTACATTATAAACTGAAAAAGCACACAACATGCAGAGGGAAAGGATAAATGACCATGTGTATCCTGCTCTGCTAAAGTCCACATCACATGACTGAGATGATGAACTTTTTTTCTGTTTTTTTTTTTATACTTTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGTACTGCACCCACTCACT;SVTYPE=INV;CHR2=3;END=197851256;SVLEN=45672834	GT	./.	E960541	contig1	size410	11	cov4.05	238	36	1.55555555555556	1	50	72	9	0	0	0	401	2	2	0	0	84	0	0	0	0	10	0	7	0
3	152896617	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGTCTCGGTGGCGGGTGCCTATAATCCCAGCTACCCACGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAAATGGTGCAGTGAGCCAAGATCGTGCCATTGCACTCTAGCCTGGGCAACAGAGTGAGACTTCATCTCAAAAACAAAACAAAACAAAAAACTTGGTTGGCCTAGTGGCTCAATCCCAGCACTTTGGGAGCCCAAGGCAGGTGAATTGTTTGAGCCCAGAAGCTCAAGACCAGTGTGAGC;SVTYPE=TRA;CHR2=7;END=87441819;SVLEN=0	GT	./.	E2951981	contig2	size254	2	cov1.19	206	10	1	0	0	55	1	0	0	0	172	34	0.647058823529412	0	0	37	9	0	0	0	5	0	5	0
3	178111037	N	.	<TRA>	39	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCTTGCAGGGACCCGAGATTGCGCCACTGAAGGCCGCAGCCAGGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAATAAAAAAATAAAAAAAAAAAAAAAAATGGGAAGAAGTAGATTTCGGCAGGCCAATGCTGCCCCTGAGAATAAAAAGAAAAAAAGCCACATAACATATGGTAATCATCTGTTTGAAGTCTTCACACTGCTACAACAGAAAAGAGAAATG;SVTYPE=TRA;CHR2=6;END=101596143;SVLEN=0	GT	./.	E43475	contig1	size235	2	cov1.29	143	56	45.6071428571429	41	59.7073170731707	38	23	45.0434782608696	17	60	154	5	25.8	2	46	59	2	30	1	60	3	0	11	1
3	180554119	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCCCACTCTTCTTCTATATAGTACTGGAAGTCATAGCCAGAGCATTCAAGCAATAGAAAAAATAAAAGACATCTAAATACATTAAAAATGTCAAACTATCTTCACAGATGATATAATTCTATGCCTAGAAAACCCTAAAGACACCTCCATAGGCTCTGGAACTGATAAACACACTTCAGTCAAGTCTCAGAACACAAAATCAATGCACAAAAATCAGTAAGACTTCTATACTCCAATA;SVTYPE=TRA;CHR2=1;END=69322210;SVLEN=0	GT	./.	E2885880	contig8	size239	2	cov1.26	165	9	13.3333333333333	2	60	43	0	0	0	0	123	14	0	0	0	46	2	0	0	0	5	0	6	0
3	195056986	N	.	<TRA>	57.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCCAGGCCGCTCTCGACCCCCGGACCCCAGGTGCTCCACCCGCCACAGCCTCCCAAGGTGCTGGGATTACAGGCATGAGCCACCACACCCGGCCTTCGTTAGTTTTAAAACCAAAAATAGGGCCCCCCCCCGCAAAAAAAAAAAAAAAATTTTTTATGACGCTTCAAGAACATAGTGAAACCCTGTCTCTACAACGGAATTAAAAATTAGCGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCATGAGTTCAGGAGA;SVTYPE=TRA;CHR2=1;END=150438496;SVLEN=0	GT	./.	E810396	contig1	size286	2	cov1.06	132	5	60	5	60	32	0	0	0	0	220	9	57.7777777777778	9	57.7777777777778	70	0	0	0	0	0	0	1	2
4	6257278	N	.	<TRA>	12.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GACAATAAAACAATCTTTTTTATTTTTATTTTTTAGTGACAGGGTCTCACTCCGTTACCCAGGCTGGAGTGCAGTGGTGCAATCATAGCTTACGGTAGCCTTGAACTCCTGGGCTCCAGTGATCCTCCCACCTCAGTCTCCTGAGTGGCTAAAACTACAGGTGC;SVTYPE=TRA;CHR2=1;END=88473124;SVLEN=0	GT	./.	E897774	contig2	size164	2	cov1.84	75	15	13.7333333333333	0	0	50	6	16.1666666666667	0	0	81	12	0	0	0	41	1	0	0	0	6	0	4	0
4	9973697	N	.	<TRA>	8	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGAGTCTCTCTAAAAGAAAGAAAATACTCTTGTTTGGGAATAGAGCATTGAATAGAAATATGTGTGCCATAGTAAACCATGTGCATATGCAGGGAGGTAAAGACTCTGCTAGAACATTTGTATGTTGCTGTAAAGAAATGCCTGAGGCTGAGCTATTTATAAAGGAAAGAGGTTTAATTGGCTCATGGTTCTACAGGTCTGATAGGATGCATGGTTCTGACATCTGCTTCTGGTGAGAGCCT;SVTYPE=TRA;CHR2=7;END=94641503;SVLEN=0	GT	./.	E3059411	contig2	size242	2	cov1.25	598	25	7.88	0	0	211	5	8.6	0	0	230	0	0	0	0	64	0	0	0	0	5	0	5	0
4	12785174	N	.	<TRA>	35	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCATCGCGGGCTGAGGTAGTAAATACTCACACCCGTCCAACCAGCGCAAACAACCCCAACCCAACCTAAAAAAAAAAAAAAAAAAAAACCTAAAGATCCATAAAACAAGCTAATGTTTTTGTTTCTGTGTGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTTGGTTTTCCTTTTTTTGCCCCGGCTGGGGGGGAGGGGCACGATCCCGGCTCCCCGCCACCTCTGCCCCCCGGGTTCAAGTGTTTCTCCTGCTTCCCCCTTCCCTGGTTGCTG;SVTYPE=TRA;CHR2=14;END=104278398;SVLEN=0	GT	./.	E2003421	contig2	size283	2	cov1.07	84	1	0	0	0	53	1	60	1	60	99	20	59	20	59	35	8	52.625	8	52.625	4	0	3	0
4	37231764	N	.	<TRA>	22	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGAAGGAGAATGGCGTGAACCCAGGTGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCAATCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAGGTTTAACTCTATAGGTTGAATCCACACATCACCAAGCAGTTTCACAGATAGCTTCTATCTAGTTTATATCTGGGGATATTTTCTTTATCACCATAGGGCTATAAACATTCTCAAATGTC;SVTYPE=TRA;CHR2=11;END=50072654;SVLEN=0	GT	./.	E1401568	contig1	size263	2	cov1.15	109	4	10.5	0	0	48	0	0	0	0	267	17	5.17647058823529	0	0	59	4	0	0	0	7	0	8	0
4	37231766	N	.	<TRA>	5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTCGGGAGGCTGAGGAAGGAGAATGGCGTGAACCCAGGTGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCAATCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGGGTTAACTCTATAGGTTGAATCCACACATCACCAAGCAGTTTCACAGATAGCTTCTATCTAGTTTATATCTGGGGATATTTTCTTTATCACCATA;SVTYPE=TRA;CHR2=11;END=50072654;SVLEN=0	GT	./.	E697553	contig2	size224	2	cov1.35	110	13	4.92307692307692	0	0	48	7	3.71428571428571	0	0	267	17	5.17647058823529	0	0	59	4	0	0	0	7	0	8	0
4	37510915	N	.	<TRA>	6	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGGGCAGAGGGTCTCCTCACTTCCCAGAAGGGGTGGCCAGGCAGAGGCGCCCCCCACCCCCCAGACAGGGCGGCTGACTGGGCGTGGGCTGCTCCCCACCTCCCTCCCTGCCGGGGTGGCTGGCCGGGCGGGGGCTGCCCCCCAACTCCCTCCCAGATGGGGCGGCTGGCCGGGAAGGGGCTGCCCCCCACCTACCTCCCAGATGGGGTGGCTGGCCGGGCA;SVTYPE=TRA;CHR2=6;END=87949118;SVLEN=0	GT	./.	E1972434	contig1	size222	2	cov1.36	120	41	2.39024390243902	1	37	41	5	0	0	0	142	50	14.64	14	39.6428571428571	56	24	9.70833333333333	2	38.5	5	0	4	0
4	38656803	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAACTAGCCGGGTGTGGTGGGACATGCCCATAATCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATCACTTGAAGCTGGGAGGAGGAGGTTGCAGTGGCACAATCTCGGCTCACTGCAAAGTCGCCTCGCAGGTTCAAGCGATTCTTCTCCCTCAGCCTCCGGAGTAGCTGGGATTATAGACACGTGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGG;SVTYPE=DEL;CHR2=4;END=38657160;SVLEN=-357	GT	./.	E4326884	contig1	size230	4	cov2.63	44	3	59.3333333333333	3	59.3333333333333	26	0	0	0	0	58	6	58.1666666666667	6	58.1666666666667	38	0	0	0	0	368	202	390	204
4	43882577	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTCCATTCCAATCCATTCCATTAAATTCGGGTTCATTCCATTCCATTCCTTTCCATTCCGTTCAGTTCCATTCCATTCCATTCCATTCCTCTCGTGTTGATTCCACCCCATTCCATTCCATTGATTCCTTTCCATTCCATTCCATTCCATTCCATTCCATTCCACTCGGGTTCATTCCATTCCATTCCATTCTATTCCATTCGTTTCGTTTCCATTCCTTTCCTTTCCATTGCATTCTTTTCCGTTGCTTTCCATTTCTTTCCTTTCCTTCCCTTTCCTTTCC;SVTYPE=INV;CHR2=4;END=49101580;SVLEN=5219002	GT	./.	E3245838	contig1	size286	2	cov1.06	392	38	1.28947368421053	0	0	115	16	0.5625	0	0	39516	12	1.66666666666667	0	0	12753	3	0	0	0	6	0	4	0
4	49251731	N	.	<TRA>	4	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATCACGGGGGTGTGGACAGCGCCTGCAATGGGGGGATCCAAACGTTTTTCCCCCCCCCGGATATGAGGAACAATATCACAAGGGGGTTGTACAACCCCTGTGATATTGGGAGTAACTTTATACCCTTTCCACATGGATATTAGGAACAATATCACAGGCGGAGTTTACACCCCCTGCTATTTTACCTGTAATATTATTCTCTTCCAACCTGGATATTAGGAATAATATAACAGGAGGGGTGACAACCACCTGTGATATTGGGAGTAAACTCATTCTCTCCCCCCC;SVTYPE=TRA;CHR2=Y;END=13285111;SVLEN=0	GT	./.	E410303	contig2	size285	2	cov1.06	590	3	17.3333333333333	1	33	227	0	0	0	0	392	1	0	0	0	124	0	0	0	0	4	0	18	1
4	57914181	N	.	<TRA>	41	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGCTAAATTTTGTATTTTTTTAGATATGGGGTCTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGAGCTCAGGCAACCTGCCTGCCTCGGCCTCTCAAAGTGCTGGGATTATAGGTGTGAGCCACCACGCCCGGCCTCCCCTTCGCCCCCCGCCCGCCCCC;SVTYPE=TRA;CHR2=3;END=49368469;SVLEN=0	GT	./.	E3864709	contig1	size164	2	cov1.84	188	5	57.6	5	57.6	43	0	0	0	0	113	12	54.0833333333333	11	59	25	0	0	0	0	0	0	3	0
4	63016359	N	.	<DUP>	3	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGAGAGAGAGAGAGAGAGAGACAGGGAGAGAGAGAGAGAAAGAGAGAAAGAGACAGAGAGAGAAAGACAGAGAGAGAGAAACAGACAGAAAGAGAGACACAGACAGAGACAGAGAAACAGCCGACAGGGGGGAGAGAGAGAGAGAGACAGACAGAGAGAGACAGACAGACAGACAGGCAGAGAAAGACAGTAAGACAGAAGACAGACACACAGAGAGAGAGAGAGACAGAGACAGAAAGAAAGACAAAGACAGAGAGAGAGAGAGAGAGAGAGAGA;SVTYPE=DUP;CHR2=4;END=80273897;SVLEN=17257538	GT	./.	E3074008	contig2	size277	2	cov1.09	216	7	34.2857142857143	4	60	66	3	21.3333333333333	1	60	10019	43	2.2093023255814	1	40	3337	10	3.8	0	0	13	1	10	0
4	63016407	N	.	<DUP>	3	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGAGAGAGAGAGAGAGAGAGACAGGGAGAGAGAGAGAGAAAGAGAGAAAGAGACAGAGAGAGAAAGACAGAGAGAGAGAAACAGACAGAAAGAGAGACACAGACAGAGACAGAGAAACAGCCGACAGGGGGGAGAGAGAGAGAGAGACAGACAGAGAGAGACAGACAGACAGACAGGCAGAGAAAGACAGTAAGACAGAAGACAGACACACAGAGAGAGAGAGAGACAGAGACAGAAAGAAAGACAAAGACAGAGAGAGAGAGAGAGAGAGAGAGA;SVTYPE=DUP;CHR2=4;END=80273897;SVLEN=17257490	GT	./.	E3074008	contig2	size277	2	cov1.09	364	10	2	0	0	125	4	2.5	0	0	10019	43	2.2093023255814	1	40	3337	10	3.8	0	0	13	1	10	0
4	64069041	N	.	<TRA>	11.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACATATGATATATCTATACTATATATACTATATATAGTATATATAGTATATATAGCATATCTATACCACATATACTATATATAGTACATATGTAGTATATCTATACTATATATACTATATATAGTATATATGTAGTATATATAATACGTATATATAGTATATATGTAGTATATATACTACGTAT;SVTYPE=TRA;CHR2=X;END=81772538;SVLEN=0	GT	./.	E1881422	contig2	size185	2	cov1.63	15	1	56	1	56	4	0	0	0	0	37	9	49	7	60	9	3	60	3	60	9	0	6	0
4	83762621	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTACTCCAGCCTGGGTGACAGAATGAGACTCCATCTCAAAAAAGAAAAAAAAAATTTTATATATATATATATATATATATATATATATATATATATACACACACACTAAAAATACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATC;SVTYPE=TRA;CHR2=1;END=182899674;SVLEN=0	GT	./.	E39669	contig2	size189	2	cov1.60	35	7	33	4	50	10	1	60	1	60	57	0	0	0	0	23	0	0	0	0	3	0	11	1
4	83786512	N	.	<TRA>	2	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATATATATTAGAAAATAAGAAGTGTGGGGGAAGATGTGAAGAAGTTGGAAATTCCCATTATTGGTGGGAATGCAAAATGGTGCAGCCACTGTGCAAAACAGTATGGCGTTTCCTCAAAAAAGTAAATAGAATCATCCTATGATCCAGCAATCCCACTTATGTGTATATATCCCAAGGAGTTTAAATTAGACTATCAAAGAGATATTTGCACACCCATGTTCATAGCAGCACTATTCACAACAGCCAAGAGGTGGAAGCAACCCAAGTGTCCATCAACAGATGAAT;SVTYPE=TRA;CHR2=16;END=71050417;SVLEN=0	GT	./.	E996260	contig1	size286	2	cov1.06	130	11	0.363636363636364	0	0	30	0	0	0	0	222	3	0	0	0	75	1	0	0	0	3	0	7	0
4	100031730	N	.	<TRA>	59	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTCCAGCTTTTAGCCGACTTTAGAGCAGAAGAAGTCTCTTTATTTGGTCTAAAATTTTCGAAGAATATCTCTGATGCCTTCCTTCTATGGAATAAATGGTTTTCTTTTCTTTTCTTTGTTCTTTTTTTTTTCTTTGTTTTTTTTTTTTTCTTATTTTTTTTTTTTTGCTTTGTTTGTTTTTTTTTTTGTTTGTTTTTTTTGTTGTTGGGGTTTTGTGTTCTTTGTGTGTGTGTACCACTCTACCCATCCTATATTTATTGTCCTGTATTCGGTCTGTTCTGCCT;SVTYPE=TRA;CHR2=7;END=55103982;SVLEN=0	GT	./.	E2764855	contig1	size286	2	cov1.06	151	0	0	0	0	33	0	0	0	0	144	24	59.8333333333333	24	59.8333333333333	48	1	60	1	60	1	0	3	1
4	125391736	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGCTCAGTCCGTGGCTGGCGTACGAGCGCGCGTCCTGCCTCTCTTCCTGCCTTGTGTTCTTCCGTCCTTCCTTCCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCCTTTCTGTTTCCTGCCTTTGTGGCTCCTTGTGTGCTTCGTGTGTGTGGCCGGTTCTTTCTGATGGTCT;SVTYPE=TRA;CHR2=17;END=13951684;SVLEN=0	GT	./.	E1460639	contig1	size275	2	cov1.10	186	2	0	0	0	58	0	0	0	0	124	4	0.5	0	0	53	5	7.2	0	0	3	0	6	0
4	158907289	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAGCTGGAGGCGTACGATCACTGCGAGGAGAGGTGGGGAGGGGGGCGGGTCGGGAGGGGCATAGCATTGGGAGGTATACCTAATGCTATATGACAAGTTAGTGGGTGCAGTGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGCGCACATGTACCATAAAACTTAGATTATAATAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAATGGTTACCCACTGCCTGCAAATCCTTGGCAAG;SVTYPE=TRA;CHR2=11;END=85041860;SVLEN=0	GT	./.	E474657	contig2	size267	2	cov1.13	232	92	51.0434782608696	78	59.7179487179487	61	24	43.1666666666667	17	60	146	7	1	0	0	51	1	4	0	0	13	1	11	1
4	178270194	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTCTATCCCTGTCCATCTGTTCCTCTCTGTTGTTGTCTCTTTCTCTTTTCGAGTGTTTCTATTTATAGCTGGGTGTGTGCCTGTTCCCAGGTCTCTGTCTCTAGCTCTGTGTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACACGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTCGTGGGTCA;SVTYPE=TRA;CHR2=19;END=49151462;SVLEN=0	GT	./.	E3648161	contig2	size286	2	cov1.06	115	0	0	0	0	41	0	0	0	0	78	13	57.6923076923077	13	57.6923076923077	29	1	60	1	60	0	1	0	0
4	186748531	N	.	<TRA>	2	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTATCATCACTGTCACCAACAGCACCATCACCACCATCATCATCACCATTACCATCCTCATCATCACCATTACTATCATCACCATCATCACCACCATCACCATCATCACCATTATCATCACCATCATCATCACCATCACCATCATCATTACCATCATCACCATAATCATTACCATCACCACCACCACCAGCAGCAGCAGCACCATTATCACCATCATCATCACCATCATCATCATCACTGCCATCACCATCATCACCATCATCAGCACCATCATCATCATCACCATCATCATCGTCATCACCACCACCACCACCACCACCACATCCTCCCCACCACCCTCACCCTCCTCCTTATCCTGATCGCGCTCATCACCCACCGCCGCCGCACCCACCACGCCA;SVTYPE=TRA;CHR2=5;END=97651602;SVLEN=0	GT	./.	E1694257	contig1	size401	3	cov1.13	685	2	4.5	0	0	236	1	40	1	40	87	0	0	0	0	29	0	0	0	0	9	0	3	0
4	187033865	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTGACGGGTTGATGAATGTTGTCAAAGGCTTTTTCTGCATCTGTTGAGATAATCGTGTGGTTTTTGTCTTTGGTTTTGTTTAAATACTGGATTACATTTATTGATTTGCAACCCAAAAAATAGGAGAAAGTTTTTGCAATGTACGCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACT;SVTYPE=TRA;CHR2=X;END=75897463;SVLEN=0	GT	./.	E57323	contig1	size185	2	cov1.63	275	204	0.42156862745098	0	0	68	52	0	0	0	87	80	0.025	0	0	16	8	0	0	0	12	0	7	0
5	28787995	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCATTTTATGTTTCCAATTTCTCCCTTTTGGAACGTGAGTGCTATCTTATTTCTGTCTTATCACACTGTAAAGTTTTTTTTTTTTAAGTTTAGTCACACAAAGTATGTTACTGGAGTAAAACACAATCTCCTGAGTAGCTGGGATTACACGTGTGCACCACCACACCCAGCTAATTTTTGTATTTTTGTAAAGATGGGATTTTGCCATGTTGCCCCGGCTGGGCTCCAACTCCTGA;SVTYPE=DEL;CHR2=5;END=28963096;SVLEN=-175101	GT	./.	E2879700	contig3	size237	3	cov1.91	83	20	49.9	19	52.3684210526316	47	0	0	0	0	36	19	41.2631578947368	14	52.0714285714286	36	0	0	0	0	12	0	7	0
5	28787996	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTTTTTTTAAGTTTAGTCACACAAAGTATGTTACTGGAGTAAAACACAATCTCCTGAGTAGCTGGGATTACACGTGTGCACCACCACACCCAGCTAATTTTTGTATTTTTGTAAAGATGGGATTTTGCCATGTTGCCCAGGCTGGTCTCCAACTCCTGACCTCAAAGTCATCCGCGTTCCTGGGCA;SVTYPE=DEL;CHR2=5;END=28963096;SVLEN=-175100	GT	./.	E2879700	contig2	size188	5	cov4.02	83	19	51	18	53.6666666666667	47	0	0	0	0	36	19	41.2631578947368	14	52.0714285714286	36	0	0	0	0	12	0	7	0
5	31930312	N	.	<TRA>	35	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACCCGGGGGGCAGAGCTGCCAGGGGGCAGCGATCGCCTCCCTGCACCCCAGCCGGGGCGACAGAGCGAGACTGTCTCCAAAAAAAAAAAAAAAAAAAGACTAAATGTACGACATATCTTTAAAAGGTAATAGCATATCAATTTGGTTAGATTTTTAAAACCAGTGCCACGTATGTTTATTTACTACTATGCCACTACTATGTAGAGTTCC;SVTYPE=TRA;CHR2=9;END=31029111;SVLEN=0	GT	./.	E3022846	contig3	size211	2	cov1.43	79	1	30	1	30	34	1	54	1	54	252	37	49.1621621621622	31	57	93	1	60	1	60	1	0	7	8
5	31930368	N	.	<TRA>	35	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACCCGGGGGGCAGAGCTGCCAGGGGGCAGCGATCGCCTCCCTGCACCCCAGCCGGGGCGACAGAGCGAGACTGTCTCCAAAAAAAAAAAAAAAAAAAGACTAAATGTACGACATATCTTTAAAAGGTAATAGCATATCAATTTGGTTAGATTTTTAAAACCAGTGCCACGTATGTTTATTTACTACTATGCCACTACTATGTAGAGTTCC;SVTYPE=TRA;CHR2=9;END=31029111;SVLEN=0	GT	./.	E3022846	contig3	size211	2	cov1.43	74	0	0	0	0	39	0	0	0	0	252	37	49.1621621621622	31	57	93	1	60	1	60	1	0	7	8
5	43377818	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGATACTACATTAGACTTAGTTGTCATCCTCATTAGTTTCCTCTTGGCTGTGACAATTTTCCCCACTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAAG;SVTYPE=TRA;CHR2=10;END=92227511;SVLEN=0	GT	./.	E4297876	contig1	size164	2	cov1.84	55	4	0	0	0	37	2	30	1	60	179	68	53.1617647058824	61	58.8852459016393	40	12	60	12	60	3	0	6	0
5	45996244	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTAATTAGATCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCGTTTGGTGTTTTAGACATTAAGTCCTTGCCCATGCCTATGTCCTGAATGGTATTGCCTAGGCTTTTTTCTGATTCTTATCTGAAGATATTTTCCTTTTCCCCACAGGCCACAATGCACTCCCAAATATCCCTTTGTGGATTCTACAAAAACAGTGTTTCTAAACCACTGAATGAAAAGAAATGTTTAAGTCGGCGAGACAAATGCACACAT;SVTYPE=TRA;CHR2=1;END=79480651;SVLEN=0	GT	./.	E3078726	contig1	size256	2	cov1.18	168	14	10.7142857142857	0	0	75	0	0	0	0	141	1	0	0	0	54	0	0	0	0	5	0	4	0
5	63979148	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAGACAGAGACAGACAGAGAGAAACAGGCAGAAAGCGAAAGAGAGAGAGAAAAACAGGCAGGACAGGAGGGAGAGAGAGAGAAAGAGAGAGAAAGAAAGGACAGAAGGAGCGAGAGAGGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCAATCCCACCACGAGGACCCGGAAATAGTGTGTGATCTGTGTCCCGGCCTAGTCCCCTGTCTGGTGTGTCGCTGACTGAGGATTCCACAAATGAAGGGCAGCGGGGTCGCTT;SVTYPE=TRA;CHR2=12;END=33135502;SVLEN=0	GT	./.	E3942439	contig13	size285	2	cov1.06	71	1	53	1	53	37	0	0	0	0	117	8	0.625	0	0	33	2	0	0	0	3	0	4	0
5	68317876	N	.	<TRA>	1	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCATTGCATTCCATTCCATTCCTTTCTGTTCCATTCAATTCCATTCCATTCCATTCTATTCGTGTTAATTCCATTCCATTCTATTCCATTCCATTCCATTGAAATCGAGTTGATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCTTTCCATCCCATTCCATTCCTTTCCCTCCCCTCCCATCCCCTCCCCTCCCATTCCATCCCATCCCATCCCCCTCCCTCCCCTCC;SVTYPE=TRA;CHR2=10;END=42375150;SVLEN=0	GT	./.	E1986233	contig8	size262	2	cov1.15	66	7	9	1	60	35	2	8.5	0	0	6421	29	0.275862068965517	0	0	2275	6	0	0	0	3	0	15	0
5	94594988	N	.	<TRA>	5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACTAGTAATCAGTACCTGGGTCATCATGTCTGAGGTGGAGAGTGAATTCATCAACTGGGCAGCAACCACGGCAACAGAAGCCAACCGCAGTCAATGCTGGCTATGCATCAAATTGCCAGAGACCACAGGAAATGGACTGCCTTGCAGAGTTGTCCTTGCCAATATTTCTGAATGGCTCTGTCACTACAAATGGGGCCAAAACAACAACACTTGCAATCCAACCTGGACTTCCTTTGCTACTTTAATAACATCTTAATACACTATAATTGTA;SVTYPE=TRA;CHR2=11;END=99052297;SVLEN=0	GT	./.	E1963720	contig2	size272	2	cov1.11	620	324	23.5925925925926	87	54.8045977011494	189	102	23.578431372549	28	53.4285714285714	156	12	9.75	1	40	43	3	9	0	0	16	0	15	0
5	97651568	N	.	<TRA>	2	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTATCATCACTGTCACCAACAGCACCATCACCACCATCATCATCACCATTACCATCCTCATCATCACCATTACTATCATCACCATCATCACCACCATCACCATCATCACCATTATCATCACCATCATCATCACCATCACCATCATCATTACCATCATCACCATAATCATTACCATCACCACCACCACCAGCAGCAGCAGCACCATTATCACCATCATCATCACCATCATCATCATCACTGCCATCACCATCATCACCATCATCAGCACCATCATCATCATCACCATCATCATCGTCATCACCACCACCACCACCACCACCACATCCTCCCCACCACCCTCACCCTCCTCCTTATCCTGATCGCGCTCATCACCCACCGCCGCCGCACCCACCACGCCA;SVTYPE=TRA;CHR2=4;END=186748254;SVLEN=0	GT	./.	E1694257	contig1	size401	3	cov1.13	97	0	0	0	0	40	0	0	0	0	468	0	0	0	0	174	1	60	1	60	3	0	8	0
5	97651602	N	.	<TRA>	2	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATTATCATCACTGTCACCAACAGCACCATCACCACCATCATCATCACCATTACCATCCTCATCATCACCATTACTATCATCACCATCATCACCACCATCACCATCATCACCATTATCATCACCATCATCATCACCATCACCATCATCATTACCATCATCACCATAATCATTACCATCACCACCACCACCAGCAGCAGCAGCACCATTATCACCATCATCATCACCATCATCATCATCACTGCCATCACCATCATCACCATCATCAGCACCATCATCATCATCACCATCATCATCGTCATCACCACCACCACCACCACCACCACATCCTCCCCACCACCCTCACCCTCCTCCTTATCCTGATCGCGCTCATCACCCACCGCCGCCGCACCCACCACGCCA;SVTYPE=TRA;CHR2=4;END=186748254;SVLEN=0	GT	./.	E1694257	contig1	size401	3	cov1.13	87	0	0	0	0	29	0	0	0	0	468	0	0	0	0	174	1	60	1	60	3	0	8	0
5	105522555	N	.	<TRA>	32	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATCCCCCAGCAGTTCTTGTGAGAAACAGAGTCTCATTTCTATTAGATAAAGCCACCTTTTCTTTCTTTTCTAGGGGAGAATATTTGCTTTCTAAGTTTATCATGAGAAGAGGAAGAGGAGCCTTCTTTTTTTTTTTTTTTTTTTTTTAGATGGAATCTTTCTCTTTCACCCCGGCTGGAGTCCAGTGGCCTGGTCTTGGGTGACCTCCAGCCCCCCCCCCCCCGTTCCCCCCCTTCTCCTGCCCCCCCCCCCCGAGTAGCTTGGACCACCGGCC;SVTYPE=TRA;CHR2=7;END=73740969;SVLEN=0	GT	./.	E2814295	contig1	size275	2	cov1.10	79	8	60	8	60	25	1	60	1	60	121	4	48.75	3	60	45	0	0	0	0	0	0	2	1
5	128211062	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACCCCAGCAACGCGGAAGGCTAAGCCAGAACAATGGTGGGCACCCGGAAGGCAGAGCTTGCAGTAAGCCGAGACCGCGCCACTGCACTCAAGCCTGGGGCAACAGAGCAAGACTCCGTCTAAAAAAAAAAAAAAATCACAAATGTTTATAGAAGCAGTATTCACAATAGCCAAAATATAGAAACAACACAAATGTTCATCAACTGATGAATGAGCAAACAAAATGTGTTATAGCCATATAATGGAATATTATTTGGCAATAA;SVTYPE=TRA;CHR2=4;END=151093680;SVLEN=0	GT	./.	E2983312	contig2	size264	2	cov1.14	83	7	3.28571428571429	0	0	37	1	0	0	0	133	0	0	0	0	38	0	0	0	0	5	0	5	0
5	156202979	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTATTCAATAAAAAACTGAGTCACTCAATACCTAGTACTGGGAGACTTTGTGAAGACTTCCTCTGTCATAGACCTGATAAGGCACATGGATATGATTCTAAATATAAAGAGAAAGTACTAGAAAGTTGAATTCCTGTATTAGATCATTCTCATACTGCAATGATGGAGTACCTGAGACTGGGTAACTTATAAAGTAAAGAAGTTTAATTGACTCACATTTCCACATAATTGTGGGGGCACCTCAGAAACCTTCCAATTACAGTGGCTGACAAGTGAAGTGAGTGAGAGCATGGGATGTACCAGATGCTTATGAAACTATCAGATCTCGTGAGAACTCACTATCACAAGAACAGCATGAGGAGAACCCGTCCCCATAATCCAATCATCTCCCCTCAGGTTTTCCCTTAACACCTAGGGGTTATA;SVTYPE=TRA;CHR2=11;END=102440440;SVLEN=0	GT	./.	E3733736	contig3	size424	4	cov1.42	592	29	0.172413793103448	0	0	174	5	0	0	0	156	11	0.636363636363636	0	0	49	1	1	0	0	8	0	9	0
5	160422522	N	.	<TRA>	51	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGGATTCCCCGGTCCAGGAATCAAGGGTTGGAAGTGAAAGTGGCACCACCCACAATCACCCCTAATGATCCACTGGCAACATTTTTGCTTCCTGTTTCCAAGACATTATGTTCTGCTGGCCTAGAGGTCTTTTTTTTTTTTTTTTTGAGACCGGGGCCGCCTCTGTTGCCCAGGCTGGGGCGCCGGGGGGGGGTTCCGGCCCCCCGCCAGCGCCGCCTCCCCGGCTCACCCCATTCTCCCCCCCGCGCCCCC;SVTYPE=TRA;CHR2=16;END=58794445;SVLEN=0	GT	./.	E976241	contig1	size253	2	cov1.19	64	12	56.25	12	56.25	30	1	60	1	60	77	0	0	0	0	37	0	0	0	0	1	0	1	0
5	162104002	N	.	<TRA>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCAGATGCCGTCAACATGTTTTTTTTACGGCCTGTAGACCGCGGGCCACTACACTCTCTCCTCTGACTACACTCCCCCGTCTTCGGGATTTCTCTATATCAATTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACTACAGTATATATACAGTATATATATATATAGTATGTATATATACAATATATATATATAGTATGTATATATACAGTATAGATCGAGAGAGCGTCGTGTAGGGAAAGAGTGTAGCTCTCGGTG;SVTYPE=TRA;CHR2=7;END=147119163;SVLEN=0	GT	./.	E4075694	contig4	size258	2	cov1.17	104	0	0	0	0	54	0	0	0	0	142	13	51.6153846153846	12	55.9166666666667	26	1	60	1	60	1	0	1	0
5	169514230	N	.	<TRA>	30.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGAGTTCAGACGTGTGCTCTTCCGATCTCACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAAGAGTGATAAATGCCATTCACAAGTTTGGGGATTTGGAGTTAATATAATATCAAATAACCAATTTAGACATTGTGTAGACATAGATCGGAAGAGCGTCGTGTAGGGAAAGA;SVTYPE=TRA;CHR2=3;END=169294627;SVLEN=0	GT	./.	E4322019	contig2	size180	2	cov1.68	76	0	0	0	0	47	0	0	0	0	144	11	60	11	60	32	1	60	1	60	1	0	0	2
5	169514261	N	.	<TRA>	30.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGAGTTCAGACGTGTGCTCTTCCGATCTCACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAAGAGTGATAAATGCCATTCACAAGTTTGGGGATTTGGAGTTAATATAATATCAAATAACCAATTTAGACATTGTGTAGACATAGATCGGAAGAGCGTCGTGTAGGGAAAGA;SVTYPE=TRA;CHR2=3;END=169294627;SVLEN=0	GT	./.	E4322019	contig2	size180	2	cov1.68	86	0	0	0	0	50	0	0	0	0	144	11	60	11	60	32	1	60	1	60	1	0	0	2
5	178758588	N	.	<TRA>	30	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGGGGGAGGGAGAGGATGGGGAGAGTGAGGAGGGGAGGGGAGGGGAGGGAGAGGAGGGGAAGGGAGGGAGAGGAGGGGGAGAGAGGGGAAGGGAGGGAGAGGAGGGGGAGAGAGGGGAAGGGAGGGAGGGGAGGGGGAGGGAGGGAGAGGAGGGAGGGGAAAGGAAGAGAGGGGAAGGGAAGGGAAAGGAGGGGAATGGAGGGGAGGGAAAGG;SVTYPE=TRA;CHR2=1;END=34330531;SVLEN=0	GT	./.	E1231148	contig1	size214	2	cov1.41	27	0	0	0	0	22	0	0	0	0	46	29	53.4137931034483	26	59.1153846153846	20	7	60	7	60	15	1	8	0
6	20232263	N	.	<TRA>	25	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGTTTAGGTACATGAATATACATGTATATACATGAGATATATATATATATATATATAAAATATATATATATATATTATATATATATATATATAATATATATATATATATATTTGAGATGGAGTCTCACTCTGTTTCCCAGGCTGGAGTGTAGT;SVTYPE=TRA;CHR2=X;END=42828498;SVLEN=0	GT	./.	E3251915	contig1	size154	2	cov1.96	32	1	23	0	0	13	0	0	0	0	23	5	45.2	3	60	7	2	46.5	2	46.5	5	0	4	0
6	20232336	N	.	<TRA>	25	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGTTTAGGTACATGAATATACATGTATATACATGAGATATATATATATATATATATAAAATATATATATATATATTATATATATATATATATAATATATATATATATATATTTGAGATGGAGTCTCACTCTGTTTCCCAGGCTGGAGTGTAGT;SVTYPE=TRA;CHR2=X;END=42828498;SVLEN=0	GT	./.	E3251915	contig1	size154	2	cov1.96	38	2	20	1	40	9	0	0	0	0	23	5	45.2	3	60	7	2	46.5	2	46.5	5	0	4	0
6	27410686	N	.	<INV>	30	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGCCGTGGAGCTGGGACCACGCGGAACTCCCTCTCCTACATTTTTTTCAGCCCCACCGCGAGTTTGCATCCGCGGGACTTTTAAGAGGGAGTCACTGCTGCCGTCAGCCAGTAATGCTTCCTCCTTTTTTGCTTTTAGGTTTTGTCTTGCCTTTTTTTTTTTTCTTTCTTTTTTTCTTTCTTTTTGTTTTTTTCTTTCTTTCTTTCTCTTCCCCGCACTCTCCCTCCCCTGCGCTCTCTCTCTTTTTCTCCCCCTTCCCCTCCCGCTC;SVTYPE=INV;CHR2=6;END=119558697;SVLEN=92148010	GT	./.	E2271620	contig2	size268	2	cov1.13	237	10	19	2	56.5	68	6	4.5	0	0	126158	28634	45.0062862331494	21758	58.5136041915617	42571	10087	44.8543670070388	7618	58.583880283539	5	0	3	0
6	32555165	N	.	<TRA>	35.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGAGGGTTGGAGGGAGGCGGGATGGCGCCAGTGCACTCCAGCCTGGGCAAGAAAGCGAGACTCCATCTTAAAAAAATAAATAAATAAATAAATAAAATAAATAAATAAATAAATAAATAAATAAAATAAAATTCAAATTTTTTACCGTGGACATCAGAGCCTATAATGATGAGGCTCCTGACTTTCTCTCTGTGTCCTACCTCATCTTCTGCCTCTCCATTTCCTTACTTTCTATACATCAGCCCCTCTA;SVTYPE=TRA;CHR2=17;END=34187454;SVLEN=0	GT	./.	E2554224	contig5	size252	2	cov1.20	110	0	0	0	0	40	0	0	0	0	78	1	0	0	0	29	0	0	0	0	12	1	15	0
6	33800609	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCGTCTGGGAGGTGAGGAGCGTCTCTACCCGGCCGCTCCGTCTGAGATGCAAGCAGACGCCGGCCTACGCGACCGGCCCGTGTCTGGAGTGCGGACGTGTGCCCCCCCGATCCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCAGGAGGGAGGTGGGGGGTCAGCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGATCGGAAGAGCACACGTCTGAACTCCCGTCACGACCAGCGCTCGTATGC;SVTYPE=TRA;CHR2=2;END=71388453;SVLEN=0	GT	./.	E2889849	contig2	size264	2	cov1.14	138	2	4.5	0	0	41	0	0	0	0	123	3	12	1	33	63	0	0	0	0	4	0	4	0
6	44012281	N	.	<TRA>	18.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCACGCACATCCACACACACCGGTCCACGCACATCCACACACAGGTCCACACACATACACACACATACGTCCACACACATCCACACACACACCCACACACACACACACACACACACACCCACCCACACGCCCCCACACACACACACACACACCCACCCACACGCCCCCTCACACCCACACACACATTCATATACACCTTCACACACACCCACGCTCACATACACACACACACATTCATATACACATTCACACACATCCATATACACCTTTACACACACATTCAT;SVTYPE=TRA;CHR2=2;END=15921077;SVLEN=0	GT	./.	E3150652	contig1	size285	2	cov1.06	480	24	17.4166666666667	4	57.5	123	4	27	2	47.5	104	0	0	0	0	31	0	0	0	0	6	0	4	0
6	57267473	N	.	<TRA>	30	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGAATGGCGGGAACCCGGGAGGGGGAGGTTGCAGTGAGCAGAGATCCAGCCACTGCACTCAAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGAATAGCAGAAGATCAAATTGTCAAAGTAAGTATTACCAAGCTTATGACTTTGAATTTTAGTGTGTGTGCTGGTGGTTTCCAAACTTTTGATTGTGTCCCCTCAGTTAAAA;SVTYPE=TRA;CHR2=2;END=238590316;SVLEN=0	GT	./.	E3783855	contig1	size222	2	cov1.36	306	38	50.4473684210526	32	59.8125	93	15	40	10	60	112	5	0	0	0	33	0	0	0	0	9	0	3	0
6	58777422	N	.	<TRA>	32	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCAATTTTTGAACACTCTTTTTTTTAGAATCTTCAAATGGGTATTTGGACAGCTTTGAGGCTTTGATTGGAAACGGGAATATCTTCACATAAAAACTAGACAGAAGCATTCTCAGAAACTTCTTTATGAAGTTTGCATTCAACTCACAGAGTGGAACTTTCCTCTTTATAGAGCAGTGTTGAAACACTCTTTTTGTAGAAACTGCAAGTGGATATTTGGACCTCTTTGAGGCCTTCGTGGGAAACGGTATTTCTTCCTATAACCCTAGACATAAGAATTTTCAGAA;SVTYPE=TRA;CHR2=21;END=14339564;SVLEN=0	GT	./.	E1112706	contig4	size286	2	cov1.06	135397	123	51.8943089430894	111	56.1981981981982	40979	39	53.7179487179487	37	55.9189189189189	312	25	9.72	3	57.6666666666667	120	4	32.75	2	57	29	2	26	1
6	64384188	N	.	<TRA>	30.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATCCACACAGTATTCAAGCTTTTTTAGTAACCATGTTTCTTTTAAAAATCTGAAATTAGTGCTAGTGAGTTCTTATTGAGACAATATGAAGCCCTTTGCACTGTAAATATTTTATATTTTTGGAGAGACATTTGATGATATCTAAGAGTAAAAATGAATATATATGTGTGTGTATATATATACACACACATATATGTGTAATATATGTGTGTGTATATATATACACACACATATATGTGTATGTGTGTATATATACACGTGTGTGTATATATACACACACACACATATATGTGTATGTGTGTGTATATATACACACACACATATATATGGTGTATATATATACCATCTTCAACTCAGTGAACCTGTGTTTTAAAATGTATCGTAAAGAAGGAATAGAAGAGGGGAAGAAAAGCATTATTTATATAGCATTGTTAATTTTTTTCAAATTAAGAACATGATAATATCTACAAGGATAAATTCATTCCCAAATAGTTAATTGTATGTAACATACAACTCGATGTAGTGTATCATACCTCAGCCTCTTTTTGGAGTGAATCTGTTACTCATTCATGAAGGAAAGAACTCTTACCAACGGGTGGTCAAGTAGAGACTGGTGATCTCCTGCGATGTTAGAGGGGTAAGGTGTAGGGGCTCTGTTAAGAGGAGGTGTTCACATATTTTCTTACTATACTTAACAC;SVTYPE=TRA;CHR2=2;END=110347592;SVLEN=0	GT	./.	E612490	contig1	size700	25	cov5.39	123	16	51	14	56.8571428571429	26	4	54.75	4	54.75	112	0	0	0	0	42	0	0	0	0	4	0	17	0
6	65298377	N	.	<TRA>	40	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACCCTCTAAAGACTAGAGATCAATTCAAAGGACTGGCTTTAGCCTCCAGCTACTGAACAGCTTTGGTTAATAAGAAGCACCTGCAGAAGACTAGAAGACAACAGGAAAGGGGTTGTCTAGTGTTTTTTTCTCTGTGTTGTCTTTTTTTTTTTTTTTTTTTTGAATTCCGTGTAAACAAAAACACGCAGTATTTAGCCTTTTTGGTTTTATTTTTGTTTGTTTAATAGAAAAGGGGGGGTTTTTTTGTTTTCCTTTGTTTG;SVTYPE=TRA;CHR2=15;END=20942026;SVLEN=0	GT	./.	E4105744	contig4	size260	2	cov1.16	151	28	43.9642857142857	20	60	45	0	0	0	0	277	0	0	0	0	82	0	0	0	0	56	0	51	0
6	69947981	N	.	<TRA>	1	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGCCTATCTTCTGTCTTACTCTCTTTCTCTGCCTGTCTATCTGTCTGTCTCTCTCTGTCTCTCTCCCTGCCTTTCTGTTTCTCTCTCTCTCCCTCTCTCGCTCTCTCTGTCTTTCTCTCTTTCTCTCTGTTTCTCTGTCTCTCTCTGTCCGTCTCTGTCTTTTTCTGTCTGTCTGTCTCTCTCTTTCTTTCTGTCGTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTGTCTCTCCCTCTCTGGGTGTATCTTTGGTCTTGGTCTCCTTCTCTTCCTTTCCGTCTGTCTGTCTGTCTCTCTCTCTCCCTGTCCCTCTCTCTTTCTGTCTGTTTCTCTCTCTCTCTCTCTC;SVTYPE=TRA;CHR2=7;END=8031725;SVLEN=0	GT	./.	E76592	contig1	size355	3	cov1.28	239	638	0.105015673981191	0	0	79	213	0.0516431924882629	0	0	274	1098	0.388888888888889	0	0	75	376	0.526595744680851	1	40	38	1	15	1
6	76487192	N	.	<TRA>	3	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCCAAGTGTGTTAATACACATTTGTGGTCCCATCTGCTCAGGAGGCTGAGGCAGGAGAATTGCCTGAGCCTGAGTGGTCAAGGCTAGAGTGAGCTGTGATTATGCATTGCATTCCAGCCCAGGTGACACAGTGAGACCCTGTTTAAAGAAAAAAACAAACA;SVTYPE=TRA;CHR2=12;END=70997975;SVLEN=0	GT	./.	E3656124	contig1	size162	2	cov1.86	441	36	1.61111111111111	1	58	143	15	0	0	0	799	66	10.5606060606061	0	0	171	8	11.75	0	0	3	0	35	1
6	95008249	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGAAAAAGGAAATAAAATAAGACAAAAAGAGAAAAAAAAGAAAAGGAAGGAAGGAAAGAAGGAAGCAAGAAGAAGGAAGGAAGGAAGGGGAAGAAAAGAAGAAGGAAGGGAGGGAGGAAAGAAAAGAAAGAGAAAAAAGAAAGAAAGAGAGAAAGAAAAGAAAGAAGGGAGGAAGGAAGAAAAAGAAAGAAAAGAAAGAAAAAAGAGAAAGAAAGGGAAAATCTAAGAGTAAATCTTGATCTAGGAAAGCCTTCTTAGATACAACAGCAAAAGCACAAGTAGGT;SVTYPE=TRA;CHR2=11;END=69782213;SVLEN=0	GT	./.	E1541643	contig4	size285	2	cov1.06	121	12	60	12	60	39	1	60	1	60	127	1	18	0	0	46	0	0	0	0	0	0	9	1
6	96918879	N	.	<TRA>	8.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTAACACATACACATACACACATACTAACACATACACACACACTAACACATACACATACATATATACAAACATACACATACACACATACAAACACATACACACACACATACACATACACATACAGATATACTAACACATACACACACACACATACTAACACATACACATACACACATACTAACACATACACATACATATATACTAACACACACTAACACATACACACATACTAACACACACACACACTAACACACACACACACTAACACATACACATACACACAA;SVTYPE=TRA;CHR2=1;END=5220237;SVLEN=0	GT	./.	E216809	contig14	size285	2	cov1.06	136	0	0	0	0	42	0	0	0	0	195	1	27	0	0	78	0	0	0	0	21	2	22	2
6	105398392	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTAATAAAATAAATGAATGTTAGAATGTGTGGGAAAAGGCAAAGTAAAACAAAAAAAAATTTTAAGAAAGAGAAAAAGGATAAATAAGTGTTGCATTTTTAATTATTTGCAAAGCCACTAAATCTTTGGTGTTTTTTTTTTTTTTTTTCAATTTTTTGTTTAATTAATGTTTTAAAAGATCAAGATCGCTAGAGGCATATGAGAACCTGACAGCACTCAGGAATTCTCCATCCTTTCTACTTTGGCAAGACAGGTACCAAGTCCTCCTATACTTCGTCCT;SVTYPE=TRA;CHR2=1;END=200208314;SVLEN=0	GT	./.	E1596017	contig1	size281	4	cov2.15	107	1	60	1	60	55	0	0	0	0	179	15	60	15	60	44	1	60	1	60	0	0	0	0
6	107380286	N	.	<TRA>	57.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAAGAGGATAAGGGGGAAGAGGGGTGGTTACAAGAGGTCGGGAGGGGAATGGAGGGGGGCGGGGTGGGGTGGGGGGAGATGGTTAATGGGTACAAAAAATTAGGGGCTGGGTGCAGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGACGTGGCAGGAGCGTCGTGTAGGGAAAGAGTGTAGATCCCGGTGGTCGCCGCATCGTTAAACAACATCTCTATTAAAAATATAAAAAATTAGCCAGGCGTGGTGGTGGACCCCTATAATCGCAGCAATTCA;SVTYPE=TRA;CHR2=14;END=91913932;SVLEN=0	GT	./.	E3393029	contig1	size282	2	cov1.07	100	1	60	1	60	30	0	0	0	0	93	10	60	10	60	41	0	0	0	0	0	0	0	0
6	134724037	N	.	<TRA>	23	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTTGTTTGTTCCCTTCCTCCCTCCTTTCCTCCTTCCTTCCCTCCTTCCCCCCCTCCCTCCTTCCTTCCCTCTCTCTCCCCCTTTCCTTCCTTCCTTCCTCCGTCCCTCCCTCCCTCCTTTCCTTCCTTCCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCCCCCCCCCCCCCCTTTTTTTCTTCCCCCCCTGCCGCTGCCACCTCCCGCGTTTTTCTT;SVTYPE=TRA;CHR2=10;END=8339288;SVLEN=0	GT	./.	E189093	contig1	size286	2	cov1.06	105	1	40	1	40	34	0	0	0	0	105	1	59	1	59	28	0	0	0	0	3	0	4	0
6	138774182	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCTCCATGTTGGTAAGGCTGGTCTCAATATCCTGACCTCAGGTTATCCGCTCTCTTCGGCCTCCCGGGGTGCTGGGATCGCAGGCGTGAGCCACCGCGCTCAGGCCAATTTATTAATCAGACAGGAATAGGTCGGCCTGGTGTTTTACATACATCAGTTAGCTCAAGTTCACTGATGATGTTGGTCAAACTTTCCAAGGCTTGCTGAGTTTTAGAAATTATTCAATCATTTGCTTACAGGGACACCTAGTGGTTCAAAATACTACTAAGTTAACCCAAGTTATTACACACTGGATATTCAATGAAGATCAATTAGTTTGGTTATTGGTGAATGATTTTTCTCCCTTTTGAAAAATAATAGCCACAAATATTTTGATGAGGAAAGGGGACAGAAAATGCACTAGGACATATTTTACAAGTATTTTAACCTCTTATTTTAACAAAAATCTCCCAGGAGGCACAATATGGATTAATTCTGTTGATTCTTACTCTGTGGCCTTTCCAGTGCAAGATTGCGCCACTACACTGCACTCTAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAGAAAAAAAGAATGAACAATTAAAGTTACTTAATAATATGGATGTGGAAGTCACCTGTTGGCCAGATAATATACCAGAGAAGTATATTATCAGACCTCTTTCTCAAACATCTTTGTCACCAATTTTTCAACAATTTTCCTTCCAAGTCCCTGAATATCCTGCCAAACCATTGGCAGCAGCCCATGAATCAGTATATAATTGCATGTCTGGCCATTTTTCCTTCCAAGAAAGTGCACAACTAGGTGCACTGTCTAAAGGTCTGCTGACTAGGCAGATTTCTCTTCACCATTGTCCTCCAGAGATGTCCCAAACAGAGGCTGTAGTGTTGCAAATGCCCACCATTGTGTAGTGCCTGCATAGTATGCAAAACCATCTGTAGACAGATCCTAGCTTTTAATTTCTCTGTTGACTGGTCATAGGAAGTTCCCTTAAGACCATGCATTCAGTGGGGAAAGAGAAGGCCGTTTAGTAGGAGTGGAGACCATGGCATTTTGACCACTTTTTCATTTAACTTATTTGTGCCTTGGGGCCTGTTCTGGCTCAATCATATATAAACCCCTTGCATTTCATAATGTTGCTGCTGTCTACCTGAAATTTCTGGCCAGGTGGGTCAGATGACACATAGTTCACCATGGGTAGCTGAGGTTGCATGGTAAGTGTTCTGCTAACACCCAACTGCAGACCAATAACTGTTTCTCAAAAAAAGAACAGTTATCTGAGGAGAATGATAGAACTTT;SVTYPE=TRA;CHR2=15;END=23712615;SVLEN=0	GT	./.	E2801615	contig1	size1304	75	cov8.68	172	30	46.4333333333333	26	49.6923076923077	34	0	0	0	0	226	1	60	1	60	45	0	0	0	0	47	0	15	0
6	149575303	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTCAATTCCATTCCATTCCATTTGATTCCATTCCCTTCCATTGCATTCTACTCAGCTTTATTCCATTCCATTCCATTCCGTTTCGATCCATTACACTCAATTCCACTCTGGTTGATTCCATTGCATTCCATTCCATTCCATTCCATTCCATTCAATTCCTTTCCATTCCATTCCACTCGTGTTGATTCTATTGAATTCCACTCCATTCCTTTCCATTCCATTCCATTCCACTCGTTTTGTTTCGATTCCTTTCCTTTCCTTTTCTTTCCTTTCCTTTCCAT;SVTYPE=TRA;CHR2=10;END=42363498;SVLEN=0	GT	./.	E2778609	contig1	size283	2	cov1.07	118	10	0.7	0	0	47	3	0.666666666666667	0	0	44951	1299	5.68206312548114	90	40.2666666666667	14730	431	5.56844547563805	28	38.0357142857143	17	1	9	0
6	167365347	N	.	<TRA>	20	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTATAATTGTAGAGCAAGGATTATTATAATATTGGAATGAAGAGTAATGCTACAAACTGATTATTCATAATATTTGTATACCATCATATCTATAATCTATTACTAGTATAACTATTCTTATTTTATATATTTTCTTTATTATACTGGAACAGCTCGTGCCCTCGGTCTCTTGCCTCAGGACTTGGGTGGCTTACCGCCCACACAAATGGGAGTGGACAGAGGCACATTTGCTGCCTGCGGGGTTCAGAGAAGGTGTCTGTGAGGGATATGGAGCTTTGATCA;SVTYPE=TRA;CHR2=7;END=142014575;SVLEN=0	GT	./.	E1126693	contig1	size282	2	cov1.07	122	1	60	1	60	35	0	0	0	0	336	8	7.5	1	60	80	2	0	0	0	10	0	9	0
6	170802311	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGGGCGGAGGGGAGGAGGAAGAGAGGAGGAGGGGAGGGGGGGGAGGGGGGGAGAAGGGGAGGGGGAGGGGGAGGGGAGGGGGAAGGGGGGGAGAGGAGGGGGAAGGGGAGGAGAGGAGGAGGAGGAGAGGAGGAAGAGAGGAGGAGGAGAGGAAGAGGAGAGGAGGAGAAGAGGAGGAGGAAGGGGAGGAGAGGAGGAAGGGGAGGAGAGGAGGAGGAAGGGGAGGAGAGGAGGAGGAGGAGAGGAGGAGGAGAGGGGGAGGAGAAGAGCGGAAGAG;SVTYPE=TRA;CHR2=7;END=65564037;SVLEN=0	GT	./.	E4217826	contig2	size278	2	cov1.09	75	0	0	0	0	20	0	0	0	0	147	1	0	0	0	41	0	0	0	0	12	1	8	0
7	1357039	N	.	<TRA>	3.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACATGGTGGTGTGCGCCTGTAATCCCAGCTACTCAAAAGGCTGAGACAGGAGAATTGCTTGAATCTGGGAGGTGGAGGTTGCATTGAGACAAGATCATGGCACTACACTCCAGCCTAGCCCACAGAGCAAGACACTGTCTTGAAAAAAAATAAAAACAAAAATAAAGAAAGCTAGCCAGTCATGGGGGTTCATGCCTATAGTCCTAGGTAATTAAGCGGTTGATGCACGAGGACTGCGCAAACCCAAGAGGTTAAGGTTACCGGGAACGATTAGTATG;SVTYPE=TRA;CHR2=13;END=99353921;SVLEN=0	GT	./.	E202835	contig1	size278	2	cov1.09	311	76	4.67105263157895	0	0	76	21	3.47619047619048	0	0	125	17	0	0	0	31	6	10	1	60	5	0	4	0
7	6012115	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTAACTGGAATGTTCTACAGTTCACATCCTGAGGAAACCAAATCACAGCATTAAATTATGGGAAATCAAACTCTTTTTGTTCCCCTGCAAGGTCACATCCTGAGGAAACCAAATCACAGCATCAAATTATGGGAAATCAAACTCTTTTTGTTCCCCTGCGAGGACAGCATTTTGCGACCTTGGCCGCACAGAGGAATGTTTCAAATAGTGACCCCTGTCCCATCCAGTCC;SVTYPE=INV;CHR2=7;END=6791873;SVLEN=779759	GT	./.	E151091	contig3	size230	2	cov1.31	130	37	0.72972972972973	0	0	19	0	0	0	0	177	29	8.75862068965517	5	40	37	0	0	0	0	43	1	44	0
7	6012181	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAATGCTGGCCGCGCAGGGGAACGAAAAGAGTTTGATTTCCCAGAATTTGATGCGGTGATTTGGGTTCCTCAGGATGTGACCTTGCAGGGGAACAAAAAGAGTTTGATTGCCCATAATTTGATGCTGTGATTTGGTTTCCTCAGGATGTGACCTTGCAGGGGAACAAAAAGAGTTTGATTTCCCATAATTTGATGCCGTGATTTGGTTTCCTCAGGATGTGAACTGTAGAACATTCCAGTTACTGGCCTTGAATGGTTCTGGGAATA;SVTYPE=INV;CHR2=7;END=6791939;SVLEN=779759	GT	./.	E151091	contig5	size269	2	cov1.12	155	35	0.771428571428571	0	0	20	0	0	0	0	234	23	8.1304347826087	4	40	48	0	0	0	0	43	1	43	0
7	8192253	N	.	<TRA>	32	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCACCACCACCACCCCCTCCCCCACCACTACCACCACCACCACCACCTCCTCCACCACCACCACCACCACCACCACCATCTCCTTCATCACCACTACCCCCACCACTACCACCATCACCTCCTCCACCATCACCACCACCACCACAACCACCATCTCCTTCATCACCACTACCCCCACCACCACCACCACCACCACCTCCGCCACCACCACCACCACCTCCACCACCACCACCACCACCACCACCACCACCACCACCCCCACCACCACCCCCATCCCCTCCC;SVTYPE=TRA;CHR2=2;END=46590098;SVLEN=0	GT	./.	E2799639	contig1	size283	2	cov1.07	351	15	37.0666666666667	9	54.5555555555556	99	1	22	0	0	183	10	19.4	3	60	70	0	0	0	0	8	3	15	6
7	20824948	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCAGGTGCGAGGAGGCGCCGCTGCTGAAGGCCGAGTGACTCAGGCCCGAGTAATCCGAGTTGTAGCCTCCGAGCGGCGAGTGCAGCGAGGTTTGGAGCCCCCCGGCGGCAGGGTGCAGCGAGCCGGGCAGCGCAGCCGCGCTGTTCGGGTTCTGCACGTCGATCCAGCCGGCCCCCACGTCCCACCAGCTGGAGGCGCCGGCCGAGCCCACCTCGCCCGCAGCACCCAGGCCCGGGTGCGAGGGCTTAAACCACGACTCGTACGGGTGCGCCATGCCCACCCGCGGGTAGATGCCCTGCAGCCCGTCCACAGAGGTGTGCACCTTGGAGATGAACACCGGCTGGTGGGAGCCGTCCTGCGAGTGCGCGGAGGAGCCGCCGCAGCTGAACGAGTCGGACACCAGGGCCGCGGCAGCCGCGGCTGCTGCCGCGGCCGCCGCAGCCGCCGAGGACGAGCCGCCGTTCCTGGAGGCCCCGGACACGCCGAAGCTTGAGAGACTGGAACCCACTACGTTGCAGCTGGCGGAAGAAG;SVTYPE=DEL;CHR2=7;END=20825107;SVLEN=-159	GT	./.	E1060653	contig1	size532	15	cov4.26	99	14	59.3571428571429	14	59.3571428571429	33	1	60	1	60	81	11	60	11	60	9	0	0	0	0	426	119	432	131
7	21703767	N	.	<TRA>	41.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCATAATGGCTGCACTAACTTACATTCCCACCAACAGTGTACAAGGATTCCCTTTTTAAGCACTTCAATTTACATACCCAATTCATCAGTTTAATTTCAGTTATTATATCTCAATTTCCCAAAGTTTTTTTTTTTTTTTTTTTTGCTTTTTTTAAAAATTTATTGTCAACTGTTTTTTTTTTTTTGTTTTTATTCTTTTATTTTTTTTTTTTTTTCTAATATGTGTTT;SVTYPE=TRA;CHR2=1;END=47318325;SVLEN=0	GT	./.	E1544637	contig1	size229	2	cov1.32	191	24	59.1666666666667	24	59.1666666666667	47	0	0	0	0	123	2	60	2	60	51	1	6	0	0	0	0	6	1
7	39070144	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTATAGAAATGCTAATCCTTTTTATATATTGATTTTATATCCTAAAATTTTGCTAAAGTTGTTTATCAACAGAAGAATAAACGGGCCAAGACTATGACTTTTTCTATATATATGTATATGTATGTGTGTGTATATACATATATATATATATATATATATATATATATATATATATATATATATATATATAGTATTTTTTGAAAGTTCAATACAGGAGATTAGCAAAAACTGTTCCTTTGAAAAAGCTAATAAATAATCAGATCTCA;SVTYPE=TRA;CHR2=9;END=76501453;SVLEN=0	GT	./.	E3770773	contig1	size267	2	cov1.13	78	5	30.8	2	58.5	28	1	60	1	60	140	10	60	10	60	59	1	60	1	60	0	0	0	0
7	45292457	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGAGAAAGAGACAACCAGAAAGAAAAAGAGAGACACACAGAGAGAGAGAGCGAGAGAGACAGAGAGAGAGAAAGAGAAAGAGAGAGACAGAGATAGACAGAGAGACAGAGACAGAGAGAGAAACAGACAGACAGGGAGGGAGGGACGGAGACAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGGCAGCCAGCCAGAGAAAGAGAGAAAGACAGAAGAAAGGCACAGACAGAGAGAAAGGCACAGAGAGAGACAGAGAGACA;SVTYPE=TRA;CHR2=18;END=53647413;SVLEN=0	GT	./.	E2495324	contig1	size271	2	cov1.11	414	9	26.6666666666667	4	60	134	4	0	0	0	164	4	11.75	1	47	64	0	0	0	0	7	0	4	0
7	55103982	N	.	<TRA>	59	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCTCCAGCTTTTAGCCGACTTTAGAGCAGAAGAAGTCTCTTTATTTGGTCTAAAATTTTCGAAGAATATCTCTGATGCCTTCCTTCTATGGAATAAATGGTTTTCTTTTCTTTTCTTTGTTCTTTTTTTTTTCTTTGTTTTTTTTTTTTTCTTATTTTTTTTTTTTTGCTTTGTTTGTTTTTTTTTTTGTTTGTTTTTTTTGTTGTTGGGGTTTTGTGTTCTTTGTGTGTGTGTACCACTCTACCCATCCTATATTTATTGTCCTGTATTCGGTCTGTTCTGCCT;SVTYPE=TRA;CHR2=4;END=100031730;SVLEN=0	GT	./.	E2764855	contig1	size286	2	cov1.06	144	24	59.8333333333333	24	59.8333333333333	48	1	60	1	60	151	0	0	0	0	33	0	0	0	0	3	1	1	0
7	55955411	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCGGCGGCGTCAGGGGGCGGAGCCTGCCGAAGCGCCCTTTGTCTGCGGAGGTGAGTGCGCGCCGGGAGGAGGCGGAGGCGGGAGGCGGCGGGCGGCGGGCGGCGGGCGGCGGGCGGCGGGCGGCGGCGGCGGCGGGAGGCGGCAGGTGGCGGGAGGGGCGGCCGCTGTCCCCGCTGTCCCCATTCCTGTCACCCGCCCCGTGTCCCTTTCAGATTTTTGGTCTTTTATAGGAAGGTCTTACCCGTTCCAATATT;SVTYPE=DEL;CHR2=7;END=55955542;SVLEN=-131	GT	./.	E2550414	contig1	size255	4	cov2.37	8	3	44.6666666666667	3	44.6666666666667	7	0	0	0	0	4	2	37	2	37	2	0	0	0	0	527	131	541	128
7	56087686	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TATGTAACACACCAATAGCATCCAGTAGAGTGTATATAAGGTACAACAAATAATTATTAGAAGAACCAATCAGCTGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAAGCCAGGAGTCTGAGACCAGCCTGGCCAACATGATGAAA;SVTYPE=TRA;CHR2=6;END=34332592;SVLEN=0	GT	./.	E485938	contig1	size178	2	cov1.70	111	1	5	0	0	54	0	0	0	0	155	15	52.4666666666667	14	55.8571428571429	32	0	0	0	0	2	0	0	0
7	56881746	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACGTGTGCTCTTCCGATCTAGACCTGGGCCTGTACAGGCCACCGGGAGGCAGGAGGTGGAACTGAGGAGCTTCGCTGGAGAAAGTTCAGGGTCTACAAAAGCCGGCGGGAGCTGGGCAGGCACTGAGTCCAAAGAGGTTGTTGGGAGGCAGAGATCGGAAGAGCGTCGTG;SVTYPE=INV;CHR2=7;END=63213812;SVLEN=6332067	GT	./.	E2305708	contig3	size170	2	cov1.78	168	2	0	0	0	47	0	0	0	0	136	2	17	1	34	35	0	0	0	0	4	0	6	0
7	57471578	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGCTCACGCCTGCAATCCCAGCACTTTGAGAGGCTGAGACGGGCGGATCACTTGAGATCAGGAGTTCGAGACCAGACTGGCCAACATGGCGAAACCCCATCTGTACTAAAAATACAAAAATTAGCCCGGCAAGGTGGCGGGTGTCTGTAATTTCAACTACTGGGGAGGCTGGGGCAGAACAATTGCTTGAACCCAGGAGGCGGAGGTTTCAGTGAGCCCAGATCGAGTCAGTCACTGCACTCCAGCCTGGGCTACAGAGTGAGACTCCGGGTCAAAAAAAGAAAAAAGAAAAATGGATTCAAAGAATTATCACTGTTAAGTTCCACCAGCAAATTATTAAACGTGGTTCCAAAGGGATATTTAAAAAGGGAAATTAAGTGTTTCCATGAAGGTCCTATTCACAGCAGAAACGCAGACACTGTTCATGACCTCACCACACAAACTTCCCTTATGTGTTGGGAGGGACCAAGGGGCTCTCTGGCCCTGCACCTGCGTTAATTACGGCCGGGAGGTCCACACTAGGACCCCAAGGTCTGGGAACCAGCCTGGATCGGGGGCAGAGAAGCGGTGGATGTGGCTCCCAAAGTGTCTTAGGTGCTCCCTTCCCTGTGGCTGTTTCCTGACTGGATGCAGCAGGGTCAGGCCTTTCGCTGTGACGTTTTCAACTCTTTGTCAGAGTGGCAGGAGCGTCCCTGTGAGAGGCGAAAATACAAACCAGTAAATTATCGAATTGTTTTAACTTTAGATTATTCTCTATATTAAGTATTCTTGTCTAATGTAAAGTTTGAAAATTATAGTGCCTTTGTACTTTCTCGTGGGAATTCTCTGAGGTTTAGTTAGACTTGATTTTTGAATACTCCCTCACACTTATTGCATTTGAAAAGTTTCCCTGTGGAAGAATTCTTTATGAATTCTGGTTATTTCTAAGGTTTATATTTAAGATAAAACTCTATCTACATCCATTACATGTATAGTGATCTTCTAGTATGAATTATCTGATGTTGAGTAAAGTGTGAACAGTTGTTAAAGGCTTTGCCACATTTTTTACATTGTATTTAAAACAGCACATAGAAAGCAAATCTGTTTTATTCATTAAGACAAATTAATAATGTTTTCCATTTTAAAGAAAGTGTGAAGGATTTTTTTTTCTAGCTAGTCGTCATCCTTTATATAGACAGCTTAGGGGTCCCTGGGTGCTGGAGACAGGGGTCCCTTGCCCACTCATATCTAAGAAGGTTCTGGTTGGCATTCATTCATTTAACACAGAAATATTAAGCAATTAACTTTGTGTGGTTACTTTGCTAGAACCTTGGCATAATTCAATGACTACAGCATACAGATCTCTGGGCCTCAATTCTATTCAAGGAGTTAGACACTCCTTCAAAGTAGATGGACATCATAGCAGGTCATGTCCACGGAATGTGAGATGAGATGCCCAATGGCCTCTTCTAGGTAGGGAGCCATCCGCTTAGATTCT;SVTYPE=DEL;CHR2=7;END=57496109;SVLEN=-24531	GT	./.	E1293175	contig1	size1478	98	cov10.01	143	63	52.9206349206349	57	56.5964912280702	45	0	0	0	0	79	73	58.9315068493151	73	58.9315068493151	39	0	0	0	0	33	0	25	0
7	57546769	N	.	<DUP>	4	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAATGGAATTGAATCATCATGGAATGGAATCGAATGGAATCATCATCGAATTGACTTGAAAGGAATCCTCATTGAATGGAATTGATTGGAATCATCATTGAATGGAATCCTCTTCACATGGAATCAAATTGAATCATCATCAAATTGAATCAAAAGGAATCATCAACAAATGGAATTGAAAGGAATCATCATCGAATGGAATCGAATGCAGTAATCATTGAATGGCATCAAATGGCATCATCATCA;SVTYPE=DUP;CHR2=7;END=61740290;SVLEN=4193521	GT	./.	E3288052	contig2	size246	2	cov1.23	1164	16	8.625	1	60	372	2	3.5	0	0	476	13	20.4615384615385	5	46.4	139	9	18.3333333333333	3	54	8	0	13	0
7	57685614	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTTGGTGTTACCTGTGCCTTGATTTCTACCTCAGCCTGCTGTACACCTGGGGCCTGGGTGTCCACCTGTGAGCCTGATGTACACCTGGAGTCCAGTGTCCCCTTGGTTACTAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG;SVTYPE=INV;CHR2=7;END=57899799;SVLEN=214184	GT	./.	E1585364	contig2	size192	2	cov1.57	226	0	0	0	0	48	0	0	0	0	314	2	13.5	0	0	79	2	0	0	0	19	0	15	0
7	57949286	N	.	<DEL>	6.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGAGAAGTTTCTAAGATTGCTTCTGTCAAGATTTTATATGAAGATATTTCACTTTCACCTTAGGCCTCAAGGTGCTCGAAATGCCCCCTGGCCGATTCTACAAAAGGAGTATTTCAAACCTGGTACATCAAAAGAAAGTTTCAACTCTTTGAGATGAATGCACATATCACAAACAAGTTCCTCAGAAAGCTTCTGTCTAGTTTTTATGTGAACATATTTCCTTTTCCACTGTAGGCCTCAAAGCACTCCCAATGTCAGTTTGCAGA;SVTYPE=DEL;CHR2=7;END=58038450;SVLEN=-89164	GT	./.	E2318824	contig1	size266	2	cov1.14	322	124	14.991935483871	9	44.3333333333333	98	34	13.2352941176471	1	60	578	17	8.11764705882353	3	44	154	2	0	0	0	4	0	5	0
7	57958883	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCGTTTTCCAGGTTCTGCAAGTAGATATTTGGCGAGTTTTGAGGCCCATGGTGGAAAAGGAAATACCTACACATAAAAACTAGGCGGAAGCACTCTCAGAAATATCTTTGTGATGAGTGCATTCAACTCACAGAGTTGAACATTTATGTTGATAGAGGAGTTTTAAAACACTCTTTTTCAGGAATCTGAAAGTGGATA;SVTYPE=DEL;CHR2=7;END=62000668;SVLEN=-4041785	GT	./.	E638240	contig2	size199	2	cov1.52	1504	30	0	0	0	497	10	0	0	0	4947	877	14.0410490307868	138	43.2608695652174	1525	296	12.777027027027	38	44.1842105263158	13	0	12	0
7	58037636	N	.	<DUP>	4	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACTTGCAGATTCAACAAAAAGAGTGTTTCCAAACGGCCCAAACAAAAGAAAGTTTCAACTCTGTGAGAGGAACGCACACATCACAAAGTGGTTTCTCAGAATTTGTCTTTCTAGATTTTATGAGAAGATAAATCCTTTTTCACCATAGGTCACAAAGCCTTCCAAATGTACAAATGCAGATTCGACAAAAAGAGAGTTTAAAAACTGCTCAATCAAAAGAAAGGGTTAACTCTGTGAGATCAATACACAAATCACAAAGAAGTTTCACAGATTGCTTCTTGCAGATTCTACAAAAAGAGTGTTTCCAAAATGCTCAATCCAAAGAAAGGTTCAAATCTGTGAGATGAACATACACATCACAAAGAAGTTTCCCAGAATGCGTCTATATAGTTTTTACGTGAAGATATTTCCTTTTCTACCATAGGCCACAAAGCGCTCCAAATATCCACTTGCAGATTCTACAAAAAGAGTGTTTCCAAACAGTTCAATGAAAAGAAAGTTTCAATTCTGTGAGATGAACTCACACATCACAAAGAAGTATCTCGGAATTCTTCTGTCTACCTTTGATGTGAAGATATTTCCTTTTCCACCATAGGCCTCAAATCACTCAAAATCTCCACTTGCAGATATTACAAACATAGATTTTCAAAACTGCTCCAACAAAAGAAAAGTTTAAATCTGTGGGATGAATGCAAACATCACTAAGAAGTTTCTCAGATTTCTTCTGTCTAGATTTTATGTGAAGATATTTCCGTTTCTACTGAAGGCCACAAAACTCTGTCTAGGATATTTCATATTCCATT;SVTYPE=DUP;CHR2=7;END=58044792;SVLEN=7156	GT	./.	E3038266	contig2	size803	33	cov6.21	941	21	15.9047619047619	7	37	312	8	15.625	2	35.5	202	14	0	0	0	52	8	0	0	0	9	0	8	0
7	61229546	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTGTGCCTTCAACTCACAGAGTTGAAGCTTCTTTTTGATAGAGCAGTTTTGAAACACTCCTTTTGTAGAATCTGCAGGCGGATATTTAAGTACTCTTTGAAGCATTCTTTGGAAACGAGAATACCTTCACCTAAAACCTAGACAGAAGCATTCTCAGAAACATCTTTATGATGTGTCCATTCATCTCACAGAGTTGATAGAACAGTTTTGATAGAGCAGTTTTGAAACACTCCTTTTAAAGAATCTGCCAGTTCATATGTGCAGTGCTTTGAGGCTTATGGTAGA;SVTYPE=DUP;CHR2=7;END=61242897;SVLEN=13351	GT	./.	E2759495	contig1	size286	2	cov1.06	298	2	0	0	0	81	0	0	0	0	1600	9	12	1	40	454	1	37	1	37	5	0	5	0
7	61978563	N	.	<DUP>	9	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGCCTGTGGTACAAAAAGGAATGTCCTCACATAAAATCTAGACAGAAGCATTGTCGGAAACTGCTTTGTGATACCTACCTTCATCTCTCAGAGTTGAATATTCCTCTTGATGGAGCAGTTTTGAAAAACTCTTTTTGTTGAATCTCCAAGTGGATATTTGGACCTCTTTGTGGCCTTCGTTTGAGACGTGACTGCTTCATACAAAAGTAGACAGAAGAATTCTCATAAACTTCTTCGTGATGTGTGCTTTCAACTCGCGGAGCTGAAGCTTC;SVTYPE=DUP;CHR2=7;END=61995484;SVLEN=16921	GT	./.	E3470672	contig1	size273	2	cov1.11	17573	1789	18.4449413079933	337	44.7715133531157	5005	572	18.8374125874126	110	43.9363636363636	599	33	6.90909090909091	3	54.3333333333333	174	15	0.466666666666667	0	0	4	0	4	0
7	62665125	N	.	<TRA>	3	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATACACAACACACACTCACATACACACAACACACACACATACACACCACACACACACACATACACACAACACACACACACACACCACACACACACACACACACACCCCAACAACACACACACACACATACCCAACACACACACATACACACACCACCCACCCACACACACACACCCCACACAACTACCCACAACACACACCTAAACACACCCCACCCACCGCGGCACACTCACATATACACACCACACACACACATATACACACAACACACTCATACACAACACA;SVTYPE=TRA;CHR2=4;END=24110622;SVLEN=0	GT	./.	E2743770	contig1	size285	2	cov1.06	152	1	60	1	60	36	0	0	0	0	79	3	40	2	60	51	0	0	0	0	8	0	6	0
7	63211754	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAAGCTCCGGCCCCTCCGCCGCTTCGGCAGGCGCAGCTCCCGTAAGCCAGCGGCCACCTCCGAGACCTACAGCCCATCCCTACCCGACGCCCTTCCCAGCTCAGCTCCGCCCTCCCGGCGGCCTCTCCAGGCCCAGAAGCTCCTCAAGTCGGCCTCTCCAGACCCACTTGCAGCCTCCCGGCGTCCTCTCCGGGCCCAGCTCTTCCTCCCGGCTGCGTCTGCAGGCCCGGCTCTCGCCTCCCGGCGGCCTCCCGGGACCCAGTCCCTGCCCGCCTCCCCGC;SVTYPE=DEL;CHR2=7;END=63219190;SVLEN=-7436	GT	./.	E2449077	contig7	size282	2	cov1.07	46	0	0	0	0	12	0	0	0	0	306	2	18.5	0	0	65	1	24	0	0	3	0	3	0
7	64751648	N	.	<TRA>	15	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTTAGCTTTCTATGTTCTTCTTTAGCTGAATGAGCATCTTTAAGCTAGGTGTTTTAGCCAGGCACAATGATATGTGTGTCTAATTCCAGCTACTTTGAAAGCTAAGGCAAGGGGATTACTGTATTAATAAATTCTCATGCTGTTAATAAAGACATAACCAAGACTGGATAATTC;SVTYPE=TRA;CHR2=11;END=27905258;SVLEN=0	GT	./.	E1239992	contig2	size175	2	cov1.73	488	73	19.2054794520548	21	39	158	19	25.3684210526316	10	38.8	118	25	0.96	0	0	47	10	1.5	0	0	4	0	3	0
7	65045619	N	.	<TRA>	2	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAAAAAAGAAAATAGCCTTATTCTATACATAATAAACTCAAGATGTGTTACAAATTTATATGTGAAATCCAAAATACTATAATATTTAAGGAATAGCTCAGTAGAATAACACTAAAATTTATTTTTTTTTTTTTTTTTTTTAAATTTATTTTTTTATTGATGATTCTTGGGTGTTTTTCTGTGGGGG;SVTYPE=TRA;CHR2=17;END=64266121;SVLEN=0	GT	./.	E4364032	contig3	size188	2	cov1.61	244	43	19.2325581395349	12	53.25	46	12	28.25	6	53.3333333333333	126	5	0	0	0	50	2	55.5	2	55.5	8	0	6	0
7	65564139	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGGGCGGAGGGGAGGAGGAAGAGAGGAGGAGGGGAGGGGGGGGAGGGGGGGAGAAGGGGAGGGGGAGGGGGAGGGGAGGGGGAAGGGGGGGAGAGGAGGGGGAAGGGGAGGAGAGGAGGAGGAGGAGAGGAGGAAGAGAGGAGGAGGAGAGGAAGAGGAGAGGAGGAGAAGAGGAGGAGGAAGGGGAGGAGAGGAGGAAGGGGAGGAGAGGAGGAGGAAGGGGAGGAGAGGAGGAGGAGGAGAGGAGGAGGAGAGGGGGAGGAGAAGAGCGGAAGAG;SVTYPE=TRA;CHR2=6;END=170802311;SVLEN=0	GT	./.	E4217826	contig2	size278	2	cov1.09	213	3	18.6666666666667	1	51	62	0	0	0	0	75	0	0	0	0	20	0	0	0	0	8	0	12	1
7	66028234	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAACACTGTAATTTAAATGATATTTTAAGTGTTTATACTGACCTGCAAAGTTTGTTTGCTTGTTTTGAGATGAAGTCCCAATCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGCCCACTGAAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGAATA;SVTYPE=DUP;CHR2=7;END=129038234;SVLEN=63010000	GT	./.	E3199553	contig2	size189	2	cov1.60	163	7	2.57142857142857	0	0	56	3	2.66666666666667	0	0	196	7	1.42857142857143	0	0	39	1	0	0	0	7	0	5	0
7	69490764	N	.	<TRA>	39.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGGCGGAGGGGTGGGGGGCAAATCCGGGCCAAGCACAATTCCCCACCCGGGGCTCACGCCCCTCCCCCCCCTCGCCCCCCGGGGCCGCTGGGCCAACAGGCCCCCCCCCCCCTCCCCCGCAACTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAGGATGCTGAAGGAGCTGAGGCAGTGCTGAAGGATGTTAAAAGCACACACAGTGGAGAGCTTATTGTTGTTCCAAGGCCTAATTGGAGATCTAGGTTGGCATTTCCTACAGCTTTCAAAGTGTACAACTAAA;SVTYPE=TRA;CHR2=19;END=15418927;SVLEN=0	GT	./.	E477040	contig4	size286	2	cov1.06	132	13	57.1538461538462	13	57.1538461538462	44	1	60	1	60	39	0	0	0	0	16	1	40	1	40	0	0	2	1
7	77981839	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGAATAAATGGAAAAATGGCATCTATTTTACTTGGAGCATTTTTTAAAAACAGAATAATTGAATCCTGCCTCTTGAAAGATTTCTTCCCAATTCTAACACTTAAGTGATAATTTTCCTTCTATAAACGTCCATTCATTATTTCAGGTTTCTCCTGAAAAAAAAATCACACTTGCTTTTATGTCAAAACTAAAGAAATAATTTTTGAATTTTTTTTTACTTGTAATGTATATATCATCATGTTCACTGTAAGTTGAATGTTAATAGCCTCTTTCCTCTGTTCTTTGTATTCTCTGAGGTTTTATTTTTAGTTTTCAATGGGTAATCTCACAATGTCACAGCTCTCCTGACTTTGCCACATCCAGACCTAAATCTGCCAGATCTCCTTTGCATAATGAACAATGTGAATATTTCTCGACATGTACAGCAGTTAAAACACCAAGGTACTGCAGGGACAGGTGCAATGCAAATACACAGATGGAGAAACTGAAAGACTTCATTAACGTCATATAATCTCACTAATGATCAACTCTTTAAGGGAAGCTCTTTCTTCAGGGATAAAAGGAGAGAAAGCAACTGGAACAATTCTGTATAAAGGAATCGCTGTTTCCCCAGGCTCTTGGCATTAGGTACCTGCCAGAATGGCAAAAGCTTTGTATCTGTTCATTTCTTTCTTGCAATAATGTCCTTGGGTAGTTCTTCCTCCTAGTCTTTTCAGATGATATCTTAGGCCTCTTCTCTTTTGCTCTGTATGTGTCCTCAGGTGAGCTAGTCAACTTGCCCAAATGTCACTTC;SVTYPE=DEL;CHR2=7;END=78082249;SVLEN=-100410	GT	./.	E3037666	contig1	size793	55	cov10.47	145	42	57.7857142857143	42	57.7857142857143	35	0	0	0	0	117	50	56.7	50	56.7	44	0	0	0	0	19	0	25	0
7	78190207	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGAGAGGTGAGAGTTACAGATTGGTTTTGAGGAGTATTCTGGAGGTGATAATTGAAGCCATGAAAGTGGATAGAGTTTCCAAGGGAGAATGAATAAAATAGCATGGAAAAATGTCAGATCTGATGTGGCAAAACGTAATCATTGGAACACTTAAATTATCATCTTCTAAGATAATTTATGATGTAAACGTTAATCTAAATACTTTAAAATTTTTTTAAAATTATGTTTAAAAACATGCAAAAAATTATTTTGTAGTTTCAAAAGACAGGTGTTACAGAAATTGAACCTTTATTTTTATGAGAGCATCAACAATAATATACAACTAGAAATTATTTGTGGGCTTCAGCGGTAGGCAGAGCTGGGTTTGAATTTCTGTTCTTCCCTTTGATAGCCTTTTGTCTGCTTTCTGATAGCATGCTCTTAACCATTACACAATCATCCTGCTCTTATAAAGCTGGATTATCTGCTGAGAGCATCAGGAATTGACATCTAGGATAATGAGAGAAGGCTGATCATGGACAACATATAGCCTTTCTAGTAGATGCAGCTGAGGCTAAAAAAGTATTTTAAATCCTTAAATTTTATTTTTGTTCTCTGCATTTGAAATCTTTATCAACTAGGTCATGAAAATAGCCAGTCGGTTCTCCTTTTGGTCTATTAGAATAAAATCTGGACTGCAACTGAGAAGCAGAAGGTAATGTCAGAATGTATAATATGCCAGGGAAATTTGATTTTGGATAAAAATGAATAATTCCTATTGAAAACATTTTTTAAGATTTGAAGTTATTATTTTCTAAAATCAAGTTTTATAACTCATCTTTGGGGGCTGCAAAAACAATTTTTTTCCATAATCATGTTTAATGGCTTTCCCTGAATTGGTTATTTTGTTTAGCTGAGTCACATTTTGCAATATTTCCTGCTGCTTTTATGCTATAAAATATAAACCACCTACATCTAGTATGCATAATATTGTCAAGTTAATGTTTCTATGAGAACCTTAACTTTCAATATTCTGACTTTTATGTGCTTAACCCTTGTGAATTAAAAGTGCATTAACATGGTTTTTGGCAATCAATTTGTTTTTCTGTTTATTTAGAACACACTCCAATCATTAAGAAAAAAATCA;SVTYPE=DEL;CHR2=7;END=78257685;SVLEN=-67478	GT	./.	E3434697	contig1	size1127	39	cov5.23	148	33	58.0606060606061	33	58.0606060606061	37	0	0	0	0	137	32	58.09375	32	58.09375	44	0	0	0	0	20	0	19	0
7	80867125	N	.	<TRA>	2.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTTCCTTCCTTCCTCCCTTCCTTCCTTCCTTCCCTCCTGCCTTCCCTCCCTCCTTCCCTCCTTCCTTCCTCCCCTCCTGCCCTGCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTTCCTACCTTCCTTCCTTCCTTCCTCCCTCCCTTCCCCCTCCCCCCCCTCCCCACTCCCGTCCCCCTCCCCTCCCCTCCCCCCTCCTCCGCTCCACCCCCCCCCCCTCCCTCCCCCC;SVTYPE=TRA;CHR2=6;END=834343;SVLEN=0	GT	./.	E3003191	contig3	size282	2	cov1.07	159	0	0	0	0	26	0	0	0	0	148	41	14.8048780487805	8	43.75	32	14	13.2857142857143	2	35	3	0	14	1
7	85844668	N	.	<DUP>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGGCACAGTTCAAGACATATCAGTAAATGTCCCATGTTTAATTCAGAAGCATTTGTATTCTCTGGGTGTTGGAAATAGTCTTCTATAAATGTTATCAGATATAATGATCAATAGTGACAATCAGGTGTTCCATATTCTTTAATAAGGTTTTGTCTAGTTGGTCTGACAGTGCTTTAAAGATTCCAACTATACTTATGAATTTTTCCCTTTAGCTTGCTAGATCATATTTCACTTATTTTGTGGTTCTATTATTATTTATATAGTCAACATGCATTACTAGTCAAAGGGTTAGTGGTGTATTCAAATACAGCTATGCTTTTTTTTTGTAGCCTTGGCAATAGCCATAGGGATGTAAAAACACATTTTGTAGCAGCTAGTGTAGAAACTATGGAGCACTCACCAGTAGTACAGA;SVTYPE=DUP;CHR2=7;END=85853700;SVLEN=9032	GT	./.	E1629456	contig2	size413	21	cov7.68	215	24	59.8333333333333	24	59.8333333333333	42	0	0	0	0	211	26	57.3461538461538	25	58.68	40	0	0	0	0	18	0	16	0
7	87441926	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGTCTCGGTGGCGGGTGCCTATAATCCCAGCTACCCACGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAAATGGTGCAGTGAGCCAAGATCGTGCCATTGCACTCTAGCCTGGGCAACAGAGTGAGACTTCATCTCAAAAACAAAACAAAACAAAAAACTTGGTTGGCCTAGTGGCTCAATCCCAGCACTTTGGGAGCCCAAGGCAGGTGAATTGTTTGAGCCCAGAAGCTCAAGACCAGTGTGAGC;SVTYPE=TRA;CHR2=3;END=152896583;SVLEN=0	GT	./.	E2951981	contig2	size254	2	cov1.19	392	39	3.17948717948718	0	0	89	7	2.85714285714286	0	0	139	0	0	0	0	33	0	0	0	0	5	0	5	0
7	94641432	N	.	<TRA>	8	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGAGTCTCTCTAAAAGAAAGAAAATACTCTTGTTTGGGAATAGAGCATTGAATAGAAATATGTGTGCCATAGTAAACCATGTGCATATGCAGGGAGGTAAAGACTCTGCTAGAACATTTGTATGTTGCTGTAAAGAAATGCCTGAGGCTGAGCTATTTATAAAGGAAAGAGGTTTAATTGGCTCATGGTTCTACAGGTCTGATAGGATGCATGGTTCTGACATCTGCTTCTGGTGAGAGCCT;SVTYPE=TRA;CHR2=4;END=9973697;SVLEN=0	GT	./.	E3059411	contig2	size242	2	cov1.25	163	17	2.23529411764706	0	0	46	4	5.5	0	0	598	25	7.88	0	0	211	5	8.6	0	0	5	0	5	0
7	99038316	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCATCATGTTTCCCAGGGTTGGTCTTGAACTCCTGGGCTCAAGTGATCCTTTTACCTCGGCCTTCGGAAGTACTGGGATTATAGGCATGAGCCACTGCACCTGGCATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTCTTCCAGATTCTCAGGACCCTTTTTCGCTGAAATGTGGACCCGCGGACTTCATGGATTTATAGAACCCTAATACACCTTTAATCACCAGCAAACCCATTTGAAGGGCCCACTCGATCTGGCTGGG;SVTYPE=TRA;CHR2=22;END=28056252;SVLEN=0	GT	./.	E862609	contig2	size271	2	cov1.11	86	13	54.8461538461538	13	54.8461538461538	24	1	60	1	60	27	0	0	0	0	11	0	0	0	0	0	0	0	0
7	99273303	N	.	<INV>	30	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATGCTTTGGGTGGAGCCTACACACCTTTTCCTCTCCTCTCCTCTCTCCTCTCCTTTTCTCTCCTCTCCTCTCCTCTCCTCCCCACTCCTCTCCCCTCCCCCTCCCCTCTCCCCTCCCCCTTCCCCTCCCCTCCTCTCCTCTCCCCCTCCCCTCCCCTCTCCTCTCCCCTCCCCTCC;SVTYPE=INV;CHR2=7;END=104613748;SVLEN=5340446	GT	./.	E2570352	contig2	size178	2	cov1.70	100	0	0	0	0	32	0	0	0	0	127	0	0	0	0	32	0	0	0	0	6	0	9	0
7	100388995	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=;SVTYPE=TRA;CHR2=X;END=81316121;SVLEN=0	GT	./.	E2890572	contig1	size548	15	cov4.13	145	0	0	0	0	42	0	0	0	0	83	2	0	0	0	19	1	40	1	40	3	0	4	0
7	100616823	N	.	<TRA>	34	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGCCCCAGCCCCTGCTATGGGCCACGGTGTGAAAATGTGAGTGCTCACCATGCACTAAATCAGCCAGCACCTTGGTCTTGAACTTTGCAGCCTTCAGAGCTGTGAAAAATAAATCTCTATTTTTTTTTTTTTTAGACGGAAGTCTTGCTTTGTTGCCCAGGCTTGCCTCAAACTCCTGGGCTTAAGCTATCCTCCCACTTCAACCACCCCAAGTGCTGGGATTACAGGTATGACACACTG;SVTYPE=TRA;CHR2=12;END=49459678;SVLEN=0	GT	./.	E4217255	contig1	size240	2	cov1.26	268	4	35.25	4	35.25	91	0	0	0	0	133	0	0	0	0	43	1	40	1	40	4	0	3	0
7	104485067	N	.	<DUP>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTTAAAAACATGTTTAAAATGGTACTTCCAGACCAATGATGAGAATGTGTCCTGAAACAGGTATTATTACTGATTTAATTCTGTGCTCCTGAAGTTTATTTTAAAAATAGCATATTGTAAAGGAGATAATCCTAGATTGTGTGGGTATAGTGTGTGCATTTCTATATGTACATAGCAGTCATAAAGTAATATTCTGGGCACCACAAATCTAAAAAACGTCCAAGTCATGGAATCATAGTAGAGATGTCAAAGGGAGGGAAAGGGTGAGAAAAGGGTGAACTGAAAAAACCTGATAGTATTATTTCTTCCTGCTCAGGGTTAATAATATAGTAAAAAGAGATTTTTATTACATACAACTAGAAAGGACCAATTAGAGTGTGGAAAGTGTTCCTTTGCATAGTCAAATGATAGGCAGGGGAATATAATTTCACCAGAAATTACTATAGCGAGTTTCAATAAAGGACTGCAGAACAATAAGGCCTTGTTAATCCCATACTGGTCTGTTCAAATAGTGTGTAATTCAAAGCAATTGCTGCTCCCTAGGCAGGAATTTACAATTGCTACATGTGAAGGGAGGATAATGTGTCATTCCAAGGGTATTGCCTGAGGAAACCAAAGATAAAATAAAAACAACAATGATGTCTAACTCTTAGATAATGCTTGGTATTGACTAGGAATATTCTTTCCTTGTAGAATAATAGAGATATTCTAAGTCT;SVTYPE=DUP;CHR2=7;END=104612302;SVLEN=127235	GT	./.	E258002	contig2	size717	33	cov6.95	142	53	58.8490566037736	53	58.8490566037736	40	0	0	0	0	221	47	59.1063829787234	47	59.1063829787234	34	0	0	0	0	38	0	38	0
7	105311729	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCCCGCGCCTGTAATGCCCGCTGTACAGGTGGCTGACGCACCAGGATCACTTGAACCCAGGAGCCTGAGGTAGCAGTGAGCTGAGATCGCACCACTGCACTCAAGCCTGGGTGACAGAGCGAAACCCTGTCTAAAAAAAAAAAAAAAATTTATTTAAAAAGTGATTCAGAATTATTTCCTTGAGGTATAATTCCCAAAGTGAAAGGCTGCAGCTTTATAGCTCTTGCTACACATTTCTTTCCAGGCCGTGTAACAGAAAGCCCAAACCAATCTACTGTGCTAATA;SVTYPE=TRA;CHR2=15;END=101512173;SVLEN=0	GT	./.	E900092	contig2	size286	2	cov1.06	115	14	58.5714285714286	14	58.5714285714286	46	1	60	1	60	175	1	60	1	60	43	0	0	0	0	0	0	3	3
7	111239299	N	.	<TRA>	44	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGCTACATTGTGATGTTTGGTAGGTTAGATATAATAATGCATTTTTGCCTTACAATATTTTCAACTGTTGAAGATTTATTGGGACATATCCCACATTGTATGAACATCTGTATTCCTGCATCCTCCATATATTCCTTTTTTTTTTTTTTTTTTTTGGGAAGGAGTCTCGCCCTGTTCCCCAGGCTGGGGTTCACTGGCGCACTCTCGGCCCCCTACACCCTCCGCCTCCCTCGTTCCCGCCCTTCCCCTCCCCCCCCCCCCCGCGGAGCCGGGACTCCGGGGCC;SVTYPE=TRA;CHR2=3;END=182805680;SVLEN=0	GT	./.	E2461637	contig1	size284	2	cov1.06	144	14	58.5714285714286	14	58.5714285714286	39	1	60	1	60	133	1	60	1	60	28	0	0	0	0	0	0	0	0
7	112337515	N	.	<TRA>	2.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGATGTGGGGAGCGCCTCTGCCCTGCCGCCCCGTCTGGGAAGGAGGTGGGGGAGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTCGGATCGCGTATGCCGTCTT;SVTYPE=TRA;CHR2=12;END=49236159;SVLEN=0	GT	./.	E1595249	contig1	size208	2	cov1.45	126	0	0	0	0	34	0	0	0	0	54	4	32.75	3	42.6666666666667	21	1	0	0	0	3	0	6	0
7	112880349	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTCCCCTCCTCTCTCTCCCCCTCTCTCCCTCCCTCTCTCTCTCTCTGTGCCTGTCTCCTCTCTTACTGTCTTTCTCTTCCTGTCTGTCTGTCTGTCTCTCTCTGTCTGTCTCTCTCTCTCTCTCCCCCCTGTCGGCTGTTTCTCTGTCTCTGTCTGTGTCTCTCTCTCTCTCTGTCTCTCTCTGTCTGTCTTTCTGTCTCTGTCTCTCTGTCTCTGGCTCTCTCTCTCTCTCTCTCTCTCTTTTT;SVTYPE=TRA;CHR2=20;END=22742904;SVLEN=0	GT	./.	E1351023	contig2	size246	2	cov1.23	281	2	30	1	60	80	0	0	0	0	178	0	0	0	0	65	0	0	0	0	4	0	3	0
7	112916365	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCTTTCTTTCTTTCTTTTTTTTCTTTCTTTCTTTCCTTTTTTCTTTCTTTCTTGTTTTCTTCTTTCTTTTTCTTTTTCTCTCTTTCTTTCTTTCCTTTCTTCCACCCTTCCTTTCTTCTTCCCTTCTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTTTTTGTCTTTTTTTTTTTTTTTTTTCTTTTCTTCGTTCTTTGTCCTTG;SVTYPE=TRA;CHR2=11;END=133442878;SVLEN=0	GT	./.	E3068212	contig4	size286	2	cov1.06	104	11	5.45454545454545	1	60	37	2	0	0	0	146	2	0	0	0	44	0	0	0	0	6	0	5	0
7	114269923	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCAACAAAACAATAACAACAACAACAAAAACAACAACAACAACGACAACCACCAGCAGCAGCAGCAACAACAACAAAAGCAACAACAGCAGCAATAGCAGCAACAACAACAAGAGGAGCAACAAAAGTAGCTGCAACAATAACAAAAGCAACAACAGCAGCAATAGCAGCAACAACAACAAGAGGAGCAACAAAAGTAGCTGCAACAATAACAAAAGCAACAGCAGCAACAACAGCAGCAGCAACAATTATAACAGCAGCAACAACAGCAACGGCAGAAAAAGCAG;SVTYPE=TRA;CHR2=10;END=99804179;SVLEN=0	GT	./.	E1806984	contig4	size286	2	cov1.06	208	0	0	0	0	43	0	0	0	0	78	6	11.6666666666667	0	0	88	3	16.3333333333333	0	0	11	0	12	1
7	116070523	N	.	<TRA>	30.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCCCTTCCCGCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTGTTTCTCTCTCTCTCTCTCTCTTTTTGTTCCTGTCTCTCTCTCTCTCTCTTTCTCTCTCTCCCTCTCTGTCTGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTGTTCCTGTCACACTGGCCTCCTTTCTTTTTTTAAGATAAAATTCATCTACAAATATTCTCTTACATATATAAATATATATATCTATAAAAATAAATTTAT;SVTYPE=TRA;CHR2=13;END=63900053;SVLEN=0	GT	./.	E1971127	contig1	size265	2	cov1.14	412	3	0	0	0	135	1	0	0	0	115	14	55.7142857142857	13	58.8461538461538	45	0	0	0	0	3	1	0	0
7	125103018	N	.	<TRA>	33	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTCTTGCTTGCTTTCTTGCTTGCTTGCTTGCTTTCGTGCTTTCTTGCTTTCCTGTTTTCTTTCTTTCTTTCTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTCCTTTCTTTCTTCTTTTTTTCTTTTCTTTCTTTCTTTCTTTCTTTTTCTTTCTTTCTTGCTTTCTTTCTTTTTTTTCTTTTTTTCTTTCCTTTCTTTCTTTTTCTTTCTTTCTTTCCTTCCTTTCTTTCTTTTTCCTTTTTTTCTTTTATTTCTTCTTTTCTTCCTTTCTATTTTTT;SVTYPE=TRA;CHR2=10;END=13985656;SVLEN=0	GT	./.	E4240042	contig1	size284	2	cov1.06	217	7	60	7	60	62	0	0	0	0	79	17	56.5882352941176	17	56.5882352941176	33	1	60	1	60	4	1	3	0
7	125746123	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCAAAAATTGAACATATGCTAACCACAATTCAAATATCAATAAACTTTTAAAAATTGAAATCATATCAATTATCTTCTCAGACCACAGTTAAATAAAACTGGAAATCAATACCAAGAAGAACTCTCTCACAACTGTTATATGCATATGTGTAAATTAAACAATCTGATTATGAATGCTCTTTAGATAAAAAATGAAATTAGGTAGAAATACAAAATTTTAAAAACAAATGAAAATAGAGACAAAGAATACCAAAACGTCTGAGATACAGCAAAAGCAGGACTCTATTTTATAGCATTAAATGTCTATGTCAAAAAGATGAAAAGATCTCAAATTAAGAACCAAATGTCCCACCTCAAGGGACTAGAAAAATAAAAACAAACCCAATCCAAAGCAACCAGAGAAAATAAATAACAAAGATCAGAGCAGAACTAAATGAAACTGAGACCAATAAAAAACAAAGAATCAATAGAATGAAAAGTTGCTTCTTTGAAAAGATAAATGAAATTGTCAGACTGCTAACTAGACTAATGAAGAAGAAAAGAGAAATTTTTAAATAGGTAGTAGCAGAAATTATAAATGCATATCATTTAAATTAAGAGCATAAATGAGGCCACATAAATGCTTTCTTTTCCAGTTTTTTTAAAATTTACTTCCCCCTTCCAGAGCAGATTGCAACAGTCTGGTATAATTGATCTTGTCCACAAAAAATCGACCGTAATACATTAAATAGTTCTGTAATGTGGCACCGTTAAAAAGGATCTGCTTCAAATGACTGTGAACTGACAAGGAAAGAAAATGTTATATAGTTGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAATTAGCTGGGCATAGTGGTGCACATCTGTAATCCTAGCTACTTGAGAGGCTGAGGCAAGAGAATCGCTTGAACCTGGGAGGCAGATGTTGCAGTGAGCCAAGATGGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTTCATCTCAAAAAGAAAAGAAAAGAAAAGAAAATGGTATATGCTTCTCTTTAGGTGTTCCAAAGGCCAGAGACTATGTCTGTAACTATTATACTAAGTTATACCAATCTCCTCCAGCCTGGACATATGGAGTCTTTTCTACCCATGATTAAAAGCTTGAGAAAAATGAGCCTGAATTTTTGACTGGCCTGAAATTTCATCCTAAGAAAGAGGATAGTAATGCAGCTAATATATTTTAACATAGGTGAAAAAACCAAAAGGGTAATACACAAATCCATGAGAAAAATGGACAAAAATATGTAGATACAGACAACAGGAATCCTCCTATGTCCAGTAGAAGAAAGAAGTAGAAATAAACATGAAAATACCTTTGACCAGCAAATATCTCCACCCTCCAGGGAGAGGTAGTAGCTTCTAGGGAAACCATCTTGGAGAGGGTCCTGTCTTCCCCTGAGGTGGGCTCTGAATCCAGCACTCTTCCCCTTTCAGAATAAAGATTAGAGAATAATTCTAATACACGATCTACAGTGGTGGTTTGTGTCTTAGGAG;SVTYPE=DEL;CHR2=7;END=126166901;SVLEN=-420778	GT	./.	E3555082	contig2	size1631	192	cov17.78	155	66	58.5	65	59.0615384615385	22	0	0	0	0	177	63	59.015873015873	63	59.015873015873	38	0	0	0	0	34	0	41	0
7	126098488	N	.	<INV>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAATTTTCAGCTGTACCTTGTCTCCTGACATTTCTCCATTTCCTTAAAGGAGGGCAGTAAAAATGATTATCAGTATCCACATTGTATGTTTGTAATCGTTAATCACTGCATATAACTATCTTAGGCTACCTGTTGGTAAACTATATGCAAAGAATATATATACACACATACAATTAATCCATTATCACAATGTATGTAAGCAACGCATTATAGAAATGCAAGGATAGACAAATCCATAACCATCATGAGAGATTTTAATTCATCTTTTCAAAGATAGAAATTTGATTATACAATATATAATTAAGAATAGTTTGAATAAGTCAGTAATAAAATTATCATTTTCACTGCATTATTTTAAAACATAAATGAGCTTCACAGAGATCAATTATGAATTAGGTTATCCAGCAACAAAAATAAAATTTTCATAACAGGAAACATGAGACTATATCCTTTCACCTAAAAAGGTAATCAAATTAAAATTATAATTTATAAATAAATATGAGTTTTTATTTGGAAACCAAATATCATCCCTGTAAGTAACTCCTATAAAAAGGAAAGTACAAACTATTTAGAAATTGAATAATCATGAAAACAGTATGTATGAAAACTTGTGGATACAACCTAAGTGGTGCTTGAAGGAAAATTTAAAGTCCAAAATGGCAATCTTAGGATGCAGGAAATCTCAAAAATTAATCATGGAACTAGGTAAACTTTAATA;SVTYPE=INV;CHR2=7;END=126167441;SVLEN=68954	GT	./.	E649711	contig2	size718	72	cov15.14	77	56	56.875	55	57.4181818181818	47	0	0	0	0	218	61	59.7049180327869	61	59.7049180327869	36	0	0	0	0	129	0	129	0
7	126167431	N	.	<INV>	30	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AACAATACAAAATTAGCTGGGCATAGTGGTGCACATCTGTAATACTAGCTACTTGAGAGGCTGAGGCAAGAGAATCGCTTGAACCTGGGAGGCAGATGTTGCAGTGAGCCAAGATGGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTTCATCTCAAAAAGAAAAGAAAAGAAAATGGTATATGCTTCTCTTTAGGTGTTCCAAAGGCCAGAGACTATGTCTGTAACTATTATACTAAGTTATACCAATCTCCTCCAGCCTGGACATATGGAGCCTTTTCTACCCATGATTAAAAGCTTGAGAAAAATGAGACT;SVTYPE=INV;CHR2=7;END=143939814;SVLEN=17772384	GT	./.	E3555082	contig3	size320	3	cov1.42	225	1	2	0	0	36	0	0	0	0	237	28	0	0	0	53	0	0	0	0	69	0	84	0
7	131272555	N	.	<TRA>	24	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCCGCCCCCGCCCCCCACCCCCCCCCCCGCCCCCCCCCCCCCCCCTCCACCCGCTCCGCCCACCCCGCCCACCCCCCACACCCCACACGCCCCACACCCGCCCCACACTCCACACACTCCACACACTCCACACACACCACACACTCCACACACACCACACACTCCACGCTCCGCACACCCCACACCCACCCCACACTCCCCACACTCCCCACACCCCCCCCACCCCCCACACCCCACACACCCCCCACACCCCACCCACCCCACACCCCCCAC;SVTYPE=TRA;CHR2=4;END=151172070;SVLEN=0	GT	./.	E4010007	contig1	size276	2	cov1.09	449	5	25.6	2	60	133	2	46	2	46	72	0	0	0	0	31	0	0	0	0	3	0	11	1
7	131272597	N	.	<TRA>	24	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCCGCCCCCGCCCCCCACCCCCCCCCCCGCCCCCCCCCCCCCCCCTCCACCCGCTCCGCCCACCCCGCCCACCCCCCACACCCCACACGCCCCACACCCGCCCCACACTCCACACACTCCACACACTCCACACACACCACACACTCCACACACACCACACACTCCACGCTCCGCACACCCCACACCCACCCCACACTCCCCACACTCCCCACACCCCCCCCACCCCCCACACCCCACACACCCCCCACACCCCACCCACCCCACACCCCCCAC;SVTYPE=TRA;CHR2=4;END=151172070;SVLEN=0	GT	./.	E4010007	contig1	size276	2	cov1.09	451	2	60	2	60	130	3	14.3333333333333	1	43	72	0	0	0	0	31	0	0	0	0	3	0	11	1
7	134897470	N	.	<TRA>	35	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGAGGAACAAGGGAGAAACTCTGTCGAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTGGTGGTGCTGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATCACTGGAGCCCAGGAGGTCGAGGCTGCAGTGAGCTGTGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCAGGACACCGTCTCAGTTTAAAA;SVTYPE=TRA;CHR2=12;END=25141069;SVLEN=0	GT	./.	E2870970	contig1	size202	2	cov1.50	171	12	55.5833333333333	11	58.0909090909091	20	1	60	1	60	120	1	4	0	0	44	0	0	0	0	0	0	1	1
7	142028760	N	.	<INV>	22	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCATAGCCTTGGCCTTCATGGGGTTTAAAGTACTTGGAAGATTCCAACTGTGCTAAATTCTACTGATTAACAGACACATGATACCATGAGAGATTATGAGAGGGAAACTGACCTCAGCTGGGAGCCAAGGGAAGCATAATGGTGATTATCACTAGGGCTGATGATGCTGAGATCTGAAGCACAGGTAGGTGTTGACCACTACAGAAAGGAAGGCTCCAGCCCAGGGCACAGGAAATGGACTTTGGAGTCTCTCAACATGGCTGGAGTAGAGAAGGGCAGGGAGGTCGGGGAGGAGAAACCCAGCAAGGCCTTGGAGGGCGACTGTGAATATAGGAAATGCAGGCTGCAGCTGAGACCACCGTAGGGTTCAACATGAGGAAAAATCATAGAGAGAGGAAAGCACGTGGTACCCAGGTAGAGACGGGAGTCTAGATGGATCTGAAATACAAATCCTATTTCACCTAGGAGGCCTCAGACTCAGGTGAATGACTAGGAAAGTCAGAGCTGGGAAACCCCTGGCACTAGCCCAAAAGGACACCTCAGAGGAAAGCCCGGAGGGCAACA;SVTYPE=INV;CHR2=7;END=142103453;SVLEN=74692	GT	./.	E1088079	contig1	size564	5	cov1.34	229	41	22.5365853658537	20	40	40	7	20.4285714285714	4	35.5	236	71	41.9859154929577	58	46.7241379310345	47	11	38.8181818181818	9	44.1111111111111	3	0	3	0
7	142588297	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACACACACACACCTGCAGACACACACACACCTGCACACACACACCTGCAGACACACACACACCTACAGACACACACACACCTGCAGACACACACATGCACACACACACCTGCAGACACACACACCTACAGACACACACACCTACACACACACCTGCAGACACACACACACCTGCACACACACACACCCACACACACACCCGAAGACACACACACACACACACCCGCCGACACACACGCCCACACACACCCCCCCACACGCACACCCCCCCGCACCCAC;SVTYPE=TRA;CHR2=2;END=195104298;SVLEN=0	GT	./.	E3924131	contig1	size278	2	cov1.09	593	2	60	2	60	106	1	22	0	0	117	1	0	0	0	41	0	0	0	0	23	2	12	0
7	143936532	N	.	<INV>	1.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTCTATTTCTGTTCTTAACCCCAGCAGGATGCACAATTAACAAACACCGACAGCCACAGAGCACACCTCTGAGACAACATCTTTCATTATAGTCCCGGAATGCTTGGATTTCATGAATCCCAGCACTGCCCTTGTTCCCCAAGCTTCAGATGGTTCAAGTGAACCTGTCAGGAAGCAGAACCAGTGTGACAATGAATAAGCTCCTGGCAGGAACCTCTGTAGCTCAGCCTCTCCCTGATGTAATCTGGGTTACTTGTGTTGCAGCAGAACTGGGAAGAAAGGACCCTGAAAAGTTAGCTGGTTCCAAGTGACCCTCCAAGGTATGGAGATGCTTTGGGGAGCTGGTGAGGGAGGCACAGAGCAGACTGGGGAGTCAACGGAGGGGCCAAGGTGTCCCGGTGGGGCTTATTAGAACCTGCCTGAAGGGAGGGTCTCCTAAGACACAAACCACCACTGTAGATCGTGTATTAGAATTATTCTCTAATCTTTATTCTGAAAGGGGAAGAGTGCTGGATTCAGAGCCCACCTCAGGGGAAGACAGGACCCTCTCCAAGATGGTTTCCCTAGAAGCTACTACCTCTCCCTGGAGGGTGGAGATATTTGCTGGTCAAAGGTATTTTCATGTTTATTTCTACTTCTTTCTTCTACTGGACATAGGAGGATTCCTGTTGTCTGTATCTACATATTTTTGTCCCTTTTTCTCATGGATTTGTGGATTACACTTTTGGTTTTGTCACCTATGTTAAAAGATTTTCGCTGCATTCCTATACTGTTTCTT;SVTYPE=INV;CHR2=7;END=144005619;SVLEN=69088	GT	./.	E3555082	contig1	size779	36	cov6.98	190	36	3	0	0	41	0	0	0	0	253	32	0	0	0	33	0	0	0	0	66	0	78	0
7	143936535	N	.	<DUP>	1.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTCCCAAATGTTATACTTACTTACTAATTATTTTCTATCTTTTTAATTTTTATACCCTCAAATGTGTGTTTATAACCAATGTTCCTAAGGTGTTGGTTATATAGAAATGAATTCTCTAAAGCCATTATTCACAGAACTTTCAGCTGAGGAATTTTATATTAAGCAATTATGCAATTTACAAACTAATGAGTTTATTACAATGTGGTCTTTGACCTGCTGGGGTTATGGTATAAACCCAAGGAAAATCTTGCCCAGGTAATCAGGGTGTGAGAACACGCTCACCTGTGTTCCAGCTGTATATGTCCACAGTGAATTGCTTTGGGGACACACAAAAATGCTCCTGATCATATGAAAAGTCTAGTGCCTAGTAGGCCATCCATAAACATTAGAATCTTTTCTTTATTTTTCTTTCCACACCCCGGTGAAGTGCAACAGATATAAATGACAAGCCTGTGAAAACAACAATTTTAGAACTTTTTTCCATATTCCTCATCATATGAACATCAGTTAGAAAAAGTCATTTTAAGGTAGAAAACAGAAAATGTGAGCTAAAACAAGTTAAATATAAGGTTTTTATGATGCCAAACAAACTAATTTAGGAAATGCATCGCCTCAAATTACATGATTTATCACATATCAAGTTGAAGAAGCTTAAGCTTCTAAAAATGGTCAGAGTAAACACATACAAAACGTAAAAGTATACGAAGGAAAATAACACAGACAGAACAGTCCGATCTTAGTAGAAATGGATATGCTTACAGATGTTTGCATGATACGCCAGTATGCAGAAATCAGGAAACTGCCTTTTGGGAGCAAGTAGTCAGCTG;SVTYPE=DUP;CHR2=7;END=144007958;SVLEN=71423	GT	./.	E1606361	contig1	size829	63	cov11.48	176	26	5.19230769230769	0	0	37	0	0	0	0	240	38	0	0	0	30	0	0	0	0	14	0	10	0
7	143938341	N	.	<INV>	3	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTACATGATCTTCCAGCATTGGGCATTTGATTTCATTGAACATTTATAACTTCTATGCTTAAAGTACTTTTAGAATTTGACCACAGAGTTCATTTGAGAGTAATACAGACAAAAGCTAACATAAGATGGGTGGGTTTAGCCACCTTACAGAGTAAATTATCCTAAGAGATGTTTTATAAAAGAGCAGCTAATAATGTTCGGAGAAACAGCCAAGACATAGGTAAATATATCTTCAGGATGGCATGACAGAAGTGGAATGAGAAGAGAGTGAAAATGCTAATGTTCTCAATTATATTTCATGAATAATTATGAGTTAAAAGGGCAGAAGTTCATCTGAAATCCTTTGAAACAGAGAACAAAAGAGAAATAATTGTAAGGACTTACTTTTAGGGTTTGTTTCAGCTGCTAGTGTTACCTTAACTAAGACAAATTCCTTAAAAGATGTGGGGTCTTCTTCCCTTGCACAATTGTCTCTGGACTTAACTGCCAGTGTGGGATTGCATTTCCCAGCCCTCTTATATTTAGGTGGGGTCATGTTCTTACAAAAGGTATACAAGCAGAAGAGATTTGTGCAGCTTCCAGGGCTGCAGTGGAAGGAGGGCATGCATGGAGGAGGAGGGCATGCCTCCTCCATGTTTGGCCTTCCCATCACTGGCTGGAAGTGAAGGCCTACAGGGCTCTAGGATGGCGGGACCATGCGATGGAAGGTGCCTGGGTCCCTGCATCACCAGTGGAAGGCTGTCTGTCATCCCTGCCTAGGACTTTACATGAGCAAGATGTAAAGTTTTATTTTGTAAAATATATTTGTAAACCTAAATATATAACAAATGAGACAGATTAGCTTAGAACACCTGTTGTCTTTTCTGGCTAATTTTTACCTAAGTGTTCATAAGCCATTTTTCAAGAATCTCATAGAATTCCATAAGATTTTACATTAAATTTATTGTCCTTTAGTTTCAACAAATCATGTCATTGGAAATTAGGATATTTGCCTCTAGTAAGTCTTAGAAACCCTCTCTTGTCCTGTACTAGAAAACATATAGGATGATTTAAAAGTTATAA;SVTYPE=INV;CHR2=7;END=144090465;SVLEN=152125	GT	./.	E1911773	contig1	size1062	63	cov8.96	231	30	0	0	0	36	0	0	0	0	240	60	42	42	60	39	0	0	0	0	93	0	97	0
7	143959226	N	.	<DEL>	7	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTGGCTGAGTTTACTGATGGTGCTGGGAACTCTGCTGCCCATCTGAGAAATGCCAAGGAAGGATCTTGCTTCTTCAAGTGCTTTTGAGAAGGGAAGGTGTTATTAAGTCATCACCTCCACAGAGTACCTTCCAATTATCATGAGAGCTTTGTGTGACGCATGAGAAAATAGGCTTCACTTGCACCAGCATGATTTCCATAGAGGCAAGATATCCAAATAGTGCAGGGAACAGGCTTATGCTACAAAATTATTTGTTGTTTTTCTGAAATTCGAAGTTAACTGCACATCCTTTTTTATCTGGAAAACCAAGCTATAACCCAAATGACTTCAACAACTTTGAGCCCGATATTATTGACAGGATGGGGCTCTGGGGCATTTTGGGGAAAGAATTGA;SVTYPE=DEL;CHR2=7;END=144088794;SVLEN=-129568	GT	./.	E568772	contig2	size394	42	cov16.10	223	43	5.02325581395349	0	0	51	0	0	0	0	154	34	14.1176470588235	8	60	59	0	0	0	0	14	0	21	0
7	146035843	N	.	<TRA>	30	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGAAAGTATAAAACTCATTGGTAAGAGTAAGTACATAGCCAAATTCAAAATATTCTAATACTGAAATGGTGGTATGCAAATCACATATACTTAGCATGAAGGCTAAAAAATAAAACTATTAAAAATAATTATAGTTACAATAATTTGTTAAGGAATACACAATATAAACAGATGCAAATTGTGACATCAGAAACATAAAAAATGGGGGTGGAATAAGAGTATAGAGTCTTTAATGTGGTCAGAATTAAGTTGCTATCAGTTTAAAATAGCCTGTTATAAGTGTATTTTATATAAGCCTCATAGTAACCACAAGCAAAATCTATATCAAATACAGAAAAGATCTTTTTAAAAAAGGTTTTAG;SVTYPE=TRA;CHR2=17;END=38916114;SVLEN=0	GT	./.	E1649543	contig3	size361	6	cov2.51	182	152	51.7302631578947	133	58.9473684210526	56	28	50.7857142857143	24	59.25	123	42	1.5952380952381	0	0	47	4	2.5	0	0	6	0	11	0
7	150203478	N	.	<TRA>	0.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ACGGCAGCCTCCGCCCGGCCGCCGCCCCGTCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGCCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCACAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGTGGTGGGGGCGTCAGCCCCCCGCCCGGCCAGCCGCCCGGTCGCGGCCGGATGGGTGGGCGCCAGCCCCCCGCCCGGCCCGCCGCCCCGTCCC;SVTYPE=TRA;CHR2=10;END=104889669;SVLEN=0	GT	./.	E1916178	contig1	size275	2	cov1.10	296	4	0	0	0	89	0	0	0	0	96	1	0	0	0	30	0	0	0	0	3	0	5	0
7	150746657	N	.	<TRA>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTCCCCCAAAGCCAGGGGACCTCTTCCTTCCTACCAGCCATGGACTCCCCACCCCCCAGTGCCGATAAGACCTTTTCCTGCATTGACATAGCCTCTCCCTAATTGTACCTGTTTTTGGAGTTGGGATTTGGAGGTGGAGGGATGTGAGAGGGGGAGG;SVTYPE=TRA;CHR2=15;END=84810725;SVLEN=0	GT	./.	E1736138	contig2	size157	2	cov1.92	122	59	54.8474576271186	57	55.9122807017544	39	0	0	0	0	72	61	42.1639344262295	46	51.1739130434783	38	0	0	0	0	116	0	108	0
7	155050748	N	.	<TRA>	30	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCTCCCCCCCCGCCCCCCTCCCCCCCCCCCCTCCTCCTCCCCCCCTCCTCCCCCTCCGCCTCCCCTCCTCCTCCCTCCTCCTCCTCCCTCCTCCTCCTCCCCCCTCCTCCTCCTCTTCCCCTCCTCCTCCTCCTCCCCTCCTCCTCCTCCTCTCCCCTTCTTCCTCCTCCTCCTCCTTTGAAACACAGCCTTAGCTAGTCTTTCCGAAGCATCCAATTTAGCTTTCACAGAAACATGAAGTCTTTCTTTTTGTACTTACAGTTAAT;SVTYPE=TRA;CHR2=8;END=124682433;SVLEN=0	GT	./.	E2300564	contig1	size269	2	cov1.12	97	8	40.75	5	60	37	3	60	3	60	144	0	0	0	0	31	0	0	0	0	14	0	16	0
7	158510035	N	.	<TRA>	30	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAGAAGAAGAAGAAGAAGAAGAGGAGGAAGAAGAGGAAGAAGAGGAAGGAGGAGAAGGAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAAGAAGAAGAAAAGAAGAAGAAAAGAGAAGAAGAAGGAAGAAGAAGGAGGAAGGAGGAAGGAGGAGGAGGAGGAGAAGGAGG;SVTYPE=TRA;CHR2=1;END=197514068;SVLEN=0	GT	./.	E1898078	contig1	size171	2	cov1.77	86	1	52	1	52	43	0	0	0	0	137	70	36.7285714285714	41	56.0975609756098	38	22	42.6363636363636	16	54.9375	15	1	4	0
8	14088735	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAACAAAGAGAGAGAAAGAAAGAGAGAAAAAAAGAGGAACGGAGGGAAAGAGAGAAAGAAAGAGAGAGAGAGACAGACACACAGACAGGCAGGCAGGCAAGGAAACAGAGTAAGACAGAAGATAGGAACAGAGAGAGAGAGAGAGAGACAGAGAGACGCAGAAAAAGAAAGAGAGAGGCAGACAGACAGAGAAAGACAGAGACAGACAGAGAGAAACAGGCAGAAAGAGAGAGAGAGAGAGAGACATGGAGGGAGAGAGACAGACAGACAGACAGAGAGGCAGGCAGAGAAAGAGAGTAAGACAGAAGACCGACACAGTGAGAGAGAAAGGCAGAGAGAGAGAGAGAGAGAGAGAGACACAGAGAGAGAGAGAGACAGATAGAAACAAACAGAAAGAGAGAGAGAGACAGAGAAAGAGAGAGAAACAGAGAGACACAGAGAGAGAGAGAGAGAGAGACGGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGGGGG;SVTYPE=TRA;CHR2=15;END=36813690;SVLEN=0	GT	./.	E3124325	contig1	size509	4	cov1.19	365	1	0	0	0	136	1	0	0	0	80	0	0	0	0	48	1	0	0	0	9	0	3	0
8	18401664	N	.	<TRA>	42.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGGAGGCCAAGATCGTACAACTGCATTCTAGCCAGGACGACAGAGTAAGACTATGTCTTAAAAAAAAAAAACAAAAAAAAACGGCTCAGATTGTCCCCTCCTAAGTCATTGCCCTCACCACAGGCATTTCCTAATTTTATTTGATTTTTTTTTTTTTTTTGGTTTGTTTCTTTGTTTTTTCTTTTAATAAAGGTATTAGTTTCGTG;SVTYPE=TRA;CHR2=7;END=133731320;SVLEN=0	GT	./.	E380754	contig2	size207	2	cov1.46	121	1	60	1	60	27	0	0	0	0	271	10	58.1	10	58.1	48	1	60	1	60	1	1	0	0
8	18768173	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAGAAATGTAAATCTGGACAAAAGCAGGAAGAAGA;SVTYPE=TRA;CHR2=21;END=29069171;SVLEN=0	GT	./.	E4319795	contig2	size159	2	cov1.90	158	16	0	0	0	47	0	0	0	0	150	52	45.4807692307692	40	59.125	45	13	32.3076923076923	7	60	5	0	4	0
8	26167656	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGATATCTAGACCATCTTGGCCAACATGATGAAATCCCGCCTCTACTAAAAATACAAAAATTAGCTGGGATTACAGGTGCTGACCACCACACCTGGCTAATTTTTTTGTATGTTTAGTAGAGACGGGGCTTCATCGTGTTGGCCAGGTTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCCCTGCACCTGACGACAAACTTTCAATT;SVTYPE=TRA;CHR2=X;END=53762398;SVLEN=0	GT	./.	E668396	contig2	size250	2	cov1.21	63	2	47.5	2	47.5	25	0	0	0	0	65	16	3.9375	0	0	17	0	0	0	0	13	1	16	1
8	43604917	N	.	<TRA>	12	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTCAGCAGGCTGGAAACACGCTTTTTGGAGAATATGCAATGGAACATTTTGGAAAGCATTGAGGCCTATGGGGAAAAATGAAATACCCCAAGATAAAAACTAGAAAGAATCTATCCATAAAATGCTTTGTGATGTGTGGATTCATCTCACAGAGTAAAACCTTTCTTTTAGATCGGAAGGGCGGCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGGATCATTAAAAAGCCTCTGGAAAAAAACTGAATATCCCCAAATAAAAACTTGAACAACC;SVTYPE=TRA;CHR2=11;END=51207934;SVLEN=0	GT	./.	E3077059	contig2	size281	2	cov1.07	172	12	5.25	0	0	55	3	6.33333333333333	0	0	163	2	60	2	60	51	2	44.5	2	44.5	9	0	3	0
8	69488212	N	.	<TRA>	33.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCTAGTGACAAAGTAAATTATTTACCTGTTTAAACTTTGATTGATTTCCTAATTTGGACAAGTTGAATCATAATATATGCTTACTTTTTGGTATGATGAGCTGACATAATGCTAGTAGATGGTTGTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTTTTTTTTTATATTTTTTTTTT;SVTYPE=TRA;CHR2=3;END=33154671;SVLEN=0	GT	./.	E4130839	contig2	size185	2	cov1.63	128	15	59.4	15	59.4	39	0	0	0	0	176	7	9.85714285714286	1	60	66	1	2	0	0	1	0	1	1
8	70915408	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGGGTGCCTGTAGTCCCAGCTACTCGGGAGGTTGAGGCAGAAGAATGGCGTGAACCTGGGAGGCGGAACTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGGCTGGGTGACAGGAGCGGACCCCCTCCCCAAAAAAAAAAAAAAAAAAATTAGCTTGACGCAGTGGTGTACGCCTACAGTCTCAGCTACTCTGGAGACTGAGGTGGGCACATTGCTTGAGGCTAGGAGTTCAAGGCTGCAGTGAGCTATGACTGAGCCACTGTGCTCCAGCCTAGGTA;SVTYPE=TRA;CHR2=7;END=140117036;SVLEN=0	GT	./.	E3981954	contig2	size281	2	cov1.07	108	1	60	1	60	35	0	0	0	0	171	16	55.6875	16	55.6875	30	1	60	1	60	1	0	0	0
8	78518240	N	.	<DEL>	54	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAAAAGGTATCAAAACCAAAGAACCCATACAGAGAGTTGGTCCCTTGAAAGTACCCAGAAACAAAACTAAATGATGATACATAACATACATCACAGTCATATCCTTAAGGAAAAAACAATAAAACCTGTTTTATCAGAGACTAGGATGGCAACCCCTGCCTTTTTTTGTTTTCCATTTGCTTGGTAGAATCAAAAATTCTAGGAGGATTTATTGCTGAAGTATACCAAACATTTAAGGGATAAATTATACCTATTTTTTTTTACAATCTCTTCTAGAAAACGGAAGCAGAGGGAACATTTTCTAATTCACAATATTGATTCTTCCTATCCATGAGCATGGAATGTTCTTACATCTGCTGAGGAGTGCTTTATCTCTACATCTGATTGGTATACCTGAAAGTGACAGGAAAAATGGAACCAAGGTGGAAAACACTCTGCAGGATATTATACAGGAGAACTTCCCCAACCTAGCAAGGAAGGCCAACATTCAAATTCAGGAAATATTGAGAATGCCACAAAGATACTCCTCGAGAAGAGCAACTCCAAGACACATAATTGTCAGATT;SVTYPE=DEL;CHR2=8;END=112063330;SVLEN=-33545090	GT	./.	E3936399	contig4	size565	11	cov2.94	141	3	51	3	51	38	0	0	0	0	166	4	49.75	4	49.75	52	0	0	0	0	5	0	5	0
8	98114145	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTTTCTCTCCCCCTTGCTCTCTCTCTCTCTTCCTGTTCCTCTCTTCCTCCCTCTGTCTTTCTCTGTCTCTCTCTCTCTCTCCCTGTCTGTCTCTCTCTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTTTCTCTTTCTCTGTCTCTCTCTCTCTTTCTGGGTGTTTCTCTCTCTCTCTCTTTCCATCTCTGTCTTTCTATGTCTTTCTCTCTCGTTCTGTCTTTCTCTCGGTTTTCCTCGCTCTGCCTTTTTGTCTCTTCCTCTTT;SVTYPE=TRA;CHR2=10;END=95591004;SVLEN=0	GT	./.	E984011	contig3	size281	2	cov1.07	122	7	39	5	49.2	35	2	20	1	40	532	2	0	0	0	198	0	0	0	0	5	0	8	0
8	108635388	N	.	<TRA>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTTCAGTGAGGCAATGGGAACATGCACGAACTGTCCAGATCCTGTGAAACTATGATAGAATTAAATCTTGTCTGCAGTCATCTATTCCAGGCTAAAATCTCATCAGGAAAAGGCATCAATTCAGTGTAGATCTCGGGGGGCGCCGTATCATTAAAACATTCTGGACTGAGTCCACAAGAATAACTTTTTGAGGTGGGGAAGAAAATGTGTTTAGGAATTCAACAAGTACTGAACAGATTAATGAACTGATAAAGGGAGAATGCTCTGAAT;SVTYPE=TRA;CHR2=1;END=112985160;SVLEN=0	GT	./.	E3064265	contig1	size271	2	cov1.11	146	19	56.2105263157895	19	56.2105263157895	40	0	0	0	0	103	1	60	1	60	43	0	0	0	0	1	0	0	0
8	112168293	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTTTTTTTTTTTTTTTTTTTTTGCGGTTTTAACTAAATCCTAAATTTTTTTTGGGTTACAAGTCCCCAAACTAATGCTTTCAAATTTTTTTTTTTTTTTTATTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTATTTTATTTTTTTTTTTTTTAATTTTTTTTTTTTTTAATAGTTTTGGTAAGATATAAATATTTAAAAAGAGGGTATTAATATTTAAATAGTATAGAAAAAAAATATAGCAGTATTT;SVTYPE=TRA;CHR2=X;END=79792424;SVLEN=0	GT	./.	E3371248	contig1	size286	2	cov1.06	170	0	0	0	0	62	0	0	0	0	111	1	0	0	0	43	0	0	0	0	11	1	6	0
8	124682433	N	.	<TRA>	30	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCTCCCCCCCCGCCCCCCTCCCCCCCCCCCCTCCTCCTCCCCCCCTCCTCCCCCTCCGCCTCCCCTCCTCCTCCCTCCTCCTCCTCCCTCCTCCTCCTCCCCCCTCCTCCTCCTCTTCCCCTCCTCCTCCTCCTCCCCTCCTCCTCCTCCTCTCCCCTTCTTCCTCCTCCTCCTCCTTTGAAACACAGCCTTAGCTAGTCTTTCCGAAGCATCCAATTTAGCTTTCACAGAAACATGAAGTCTTTCTTTTTGTACTTACAGTTAAT;SVTYPE=TRA;CHR2=7;END=155050748;SVLEN=0	GT	./.	E2300564	contig1	size269	2	cov1.12	144	0	0	0	0	31	0	0	0	0	97	8	40.75	5	60	37	3	60	3	60	16	0	14	0
8	131248115	N	.	<DUP>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGAGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGACAATAGCTTGAACTCGGGGGATGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGTGAGACTCCATCTCAAAAAAAAATAATTTCATGATGATAAAATTAAGAGGAACATGCATTTACTGAACTCCCATAACCTGGCAGACCCTTTACAGATATGAGATCATTAAATCCCTTCAACA;SVTYPE=DUP;CHR2=8;END=131274647;SVLEN=26532	GT	./.	E2726305	contig6	size236	8	cov5.12	142	15	44.2	11	54.0909090909091	54	0	0	0	0	207	12	30.1666666666667	6	49	49	0	0	0	0	7	0	8	0
8	134206863	N	.	<TRA>	7	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCCAGACCCACCCCCCCCCCCTCCACCACGCGCTCCCCAGCTATACACACCCCCCACACCCACACCCCCCACACACCACATAACCCTCTGCACACGCACACACCCCACACACCCCACACACAGCACACACCACACCATGTGCACACACACCCCACACACAGACACCACACACTGCACACACACCCCACCCCCCCGCACACGCCACACCGAGCACATGCACACACCACACACACCGTCTACACAAGCACACAAGCCCCACACATACACCACAGACACCCCACACA;SVTYPE=TRA;CHR2=22;END=40099594;SVLEN=0	GT	./.	E3036402	contig2	size286	2	cov1.06	185	6	52.1666666666667	5	60	55	4	13.75	1	41	134	0	0	0	0	47	0	0	0	0	10	0	5	0
8	144018247	N	.	<TRA>	5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTCTGTGTGTGTCTGTGTGTCTGTGTGATTGTGAGTGTGCGCGTGTGTGCTCGAGTCTCGGTCAGTGCGCGTGTGTGTGCTTCTGCGTGTATACGTGTGTGTGTGTGTGTGTGTGTGT;SVTYPE=TRA;CHR2=18;END=34473463;SVLEN=0	GT	./.	E478655	contig1	size284	2	cov1.06	146	1	12	0	0	45	0	0	0	0	106	5	38.4	3	60	45	3	33.3333333333333	2	50	5	0	4	0
9	12354700	N	.	<TRA>	10.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAGACAGAGATAAAAAGAGAGAGAGAGAGAGAGAGAGAGAATTCACCTTTCCTCTGACTTTTTGTTCTATTTGGGCCCTCAGTTGATTGATTGAGAGAGGGTGGGTCTTTCTCACGCACCCCACTGAGATAAAAAGAGAGAGAGAGAGAGAGAGGCAGAGACAGAGACAGAGAGAAAGAGAGAGACAGACAGAGAAAGAGAGAGAGAGACAGAGAGACAGAGAGAAACACCCAGAGCGCGCGAGAGAGACAGAGAAAGAGAAAGGGAGGGCGCGACAGAGAGAGAG;SVTYPE=TRA;CHR2=7;END=4443028;SVLEN=0	GT	./.	E1017420	contig1	size286	2	cov1.06	98	0	0	0	0	66	0	0	0	0	440	80	1.85	0	0	124	22	1.77272727272727	0	0	3	0	11	1
9	28031835	N	.	<INV>	60	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACATAAGATACCCAAAGTAGTTTTACACAAGAGAGTGAGTGCTACAATACATGGGTATAAAAATGACATAACTCATTCTTTCTTTTTCCGCAGCACATGCTTAAATAAACTTATAGTTTCTCTTACTGGACTTACACTAAATAAATGTTATGAAGTAGATAAATGACTTTAATAAATTCCTTCCAAGCACACCAGTTTGAAGATAAAGCAAAATGTAAGTTATACAAACACCAATGAACAAGAAAATTAAAGAAGTAATTTTCTCTAATTTCTATTATAAACATTCAGCCAATTTATAAGGTAAATATAGTAACAGTCTAATCAGAAAATAAAACCATAAAATTCCAAACTTATCAAAAAATATTGCACTATGGACTTAAGTCCACTCATAATAAGTTAGCTGGGATTAATGATAGTATAAAGACATTGCAATTTCTAAGATATTAAAAATATAGCTAATTCCAACTTAATCTAAACTACTGTTAAAACTTTGCATTTTTCTTAGGTATGAACACTTGTACATGCATGCAATTTATAAGTAAACAATTATATATAAATTGGTGTGCATGCTCACATTTTATTTCCTGTTATGATGGTGTATATCAAAAAAGATTCAGAGCTCACAACTTCAATTATACCAAGTATTTTATAATAGAAGTGTTTCCTAGTAGTTAGGCTGTTGGGAAAAAGCTGAGTGTTGGGAGGGAAACTGAGGCAGGGCTTGCATAATGTCCTCTGGAATGTGTCTAGACTTTCTGACTATTTCACTAATATCTCTCTGTAATGATCTGTTTTCCTTTGATAGACAAGTGTGTGTTCTGGACAGCTTGCTGCCATACAGCACTGAAAGGGAGCTGGTAGAGGTCTCCCAGGTATTCCCAATCAGCCCTGGACAAACAATAATCGGCTTAG;SVTYPE=INV;CHR2=9;END=28059140;SVLEN=27304	GT	./.	E1277970	contig1	size913	40	cov6.62	87	35	42.5428571428571	23	55.6086956521739	43	0	0	0	0	107	39	27.9230769230769	16	53.9375	50	0	0	0	0	62	0	63	0
9	28031863	N	.	<INV>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATATTATCCTCGTTTTCTAGGCTGACTTGCAAAGCCCTATCCTTCAAATATCACACATAAGGATATTTGAGTTCTTTGTGAGTTGCTGAAATTCTGGGCTTCTGGGCCACAAAAGCCAGGCTGAGCTTTCTTTTCGGAATTCACGCTTCACCATGATGCTCCAAATCCTCCTTAAAATACCTTCAATCTGGTGTATTATTGTGACAGCCAACTGTGTGCCAGGCAGGCAGTACCTATTAAAAGTTGTTTGGAGATTAGGGCTCAGAGAACAGCTGGGTACCTTTGTTA;SVTYPE=INV;CHR2=9;END=28034467;SVLEN=2605	GT	./.	E1238205	contig1	size288	25	cov13.11	51	33	58.8484848484849	33	58.8484848484849	47	1	60	1	60	41	33	59.5757575757576	33	59.5757575757576	31	0	0	0	0	60	0	57	0
9	28034299	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGTGTTTCTATTCTGCCCCAATTTAATACCATCCTTACAAAGCTCACATCATGTGTGAAACTTATTGAAAAGTATAACCAGGATAATCTGCTAAATTCGTTAGGAAGACAGAAGATGTAGCTGACTTCAGTGAGAGTTTGAAGTGAATGCAACCCAAGTCATGTATAGTTCACTTGAAGGACATTTGTTCAGTCAACAAGGATTTCCCATCCCCCACACCCAAGTCCAGCCCTTTCCAGTGGGCCCTTGTGCGTTTTATTCTTGTAAACACACTTCAATATCACCTTCTCTAAGAAGGGGCTGTTCATTTGTATGAGCTTCTGTAGGTCTCCCTTCTAAGAGATGCCTTAGCAAAGCTTCATGTGCTCTGGAGGTCTCGGGCCCTCCTCCCTGTCTAGGAGGCTCCTCCAAAGTGAATTAGCTTCATTTCCCATTTTCATTCTACCTTAAACCTGTGAGGTGTTTGTTTCCTGGGGCCAGGGCTTGCTGGGGCGTTCAGCAGCCTGCACACCAGCTGCTGCTCTGCTCCCCAGTGTGCATCTTGTAACAACGCAGCTCCTTTGCTGGTTGTTGAATAGGTAGAGGGGCAGCTGTGAAGGGCAGAAGAAAGCTGACTATTTCACTCACCTCTTGAATGCTTTGCTGCTTAGAAATTTCTTCCAAGAGATACCCTAAATCATCTCTCTCAAGTTCAAGTTCCACAACTCTCCAGGGCAGGGGCAAAATGCCACCGGTCTCAGGGAAGAGTCACCTTTGCTTCAGTTCCCAATAAGTTCCTCATCTCCATCTGAGACTACCTCAGCCTGGATTTCATTGTTGATATCAATATCAGCATTTTGGTCAAAGCCATTCAACATGTCTCTAGGGAGTTCCAAACTTCCCTACATTTTCCTGTCTTCTTCTGAGTCCTCCAAACTGTTCCAACCTCTGCCTGGTACCCAGTGTGAAAGTTGCTTCCACATTTTCGGGTATCTTTTCATCAGTGCCTTACTCTAATGGTACCAATTTACTATATTAGTCCATTTTCATGCTGCTAATAAAGACATGC;SVTYPE=DEL;CHR2=9;END=28157692;SVLEN=-123393	GT	./.	E2654634	contig1	size1049	42	cov6.05	71	29	50.3103448275862	24	58.2916666666667	54	0	0	0	0	39	22	27.2272727272727	9	56.5555555555556	32	0	0	0	0	14	0	15	0
9	35183587	N	.	<TRA>	28.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGCCTGCCTTGGCCCCCCAAAGCGCCGAGGTGGCGGCCGCCGCCCGGCCGCCGCCCCGCCTGGGAAGTGATGACCGCCCCTGCCTGGCCGCCCCTCGTCTGGGATGTGAGGAGTGCCTCTGCCCGGCCGAGACCCCATCTGGGAGGTGAGGAGCACCTCTGCATGGATGACACACCATCTGGGAAGTGAGGAGGGCCTCTGCCTGGCCACCCCTTGTCGGGGAGGTGGGGAGCGGCTCTGCCCGGCCACCCCGTCTGGGGTGGGGGGCGCGCCTGCGTCGTGGAGC;SVTYPE=TRA;CHR2=21;END=14752388;SVLEN=0	GT	./.	E2381868	contig13	size286	2	cov1.06	122	2	42.5	2	42.5	31	1	60	1	60	121	3	59.6666666666667	3	59.6666666666667	47	0	0	0	0	4	0	8	0
9	42265244	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGATATCAGGCCTCAAGAGGATGGCAGTCACCAGGTAGACATCAGGCCTCAGATAGACACCAAGGTCCCAGATGTACAGCAGGCCCCAACTGAACCCCAGACTCATGTGGACATCAGGCCACAGGTAGACACCAAGCCTTAGGTAGATACCTAACTTCAGGTAGTCATCAGACCCAAGGTGGACACCCAGTCCCCAGGTGGACATTAACCCACAGGTCAACCACAGTCCCCAGGTTGATACCTGGTCCAGATCGGAAGAGCGTCGTGTAGGGGAAGAGTGTAGATCTCGGTGGTCGCCGTAGCCTTAAAAAAGCA;SVTYPE=INV;CHR2=9;END=45426068;SVLEN=3160825	GT	./.	E2525464	contig2	size315	3	cov1.44	115	1	0	0	0	36	0	0	0	0	165	3	8	0	0	44	0	0	0	0	21	2	14	1
9	45105579	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACAGAATTGGTGCTCAATGAAGATTTGTCCATCCAGATGAAGAATGGATGGGTGGCTGGATGGGTAGGCAGATGGATGATGAGTGGGTAGATGGGTAGGTGGATGGGTAGATGGGGATAGATGGATGATGAATGGATGAGTGGGTGGGTGGATGGAT;SVTYPE=DEL;CHR2=9;END=47163267;SVLEN=-2057688	GT	./.	E173182	contig2	size158	2	cov1.91	70	0	0	0	0	19	0	0	0	0	233	1	25	0	0	71	0	0	0	0	7	0	8	0
9	66783285	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCGTTGGAAACGGGAACGTCTTCATGAAAAACCGCGACAGAACCATTCTCAGACACTTCGTTGTGCTGTGTGCATTCAAGTCACAGAGTTGAATATTCCCTTTCACAGAGTAGGTTTGAAACACTCTTTTTGTAGTATCTGGAAGTGGACATTTGGAGCGCCTTGACACCTACGGTGAAAAGGGAAATATCTTCCCATAAAAACTAGACAGAAGCAATCTCAG;SVTYPE=DEL;CHR2=9;END=67320763;SVLEN=-537478	GT	./.	E34900	contig1	size223	2	cov1.35	778	21	0.904761904761905	0	0	240	3	0	0	0	179600	9175	13.6767302452316	1872	43.6431623931624	67182	3139	14.5352022937241	686	43.963556851312	15	1	4	0
9	66783342	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCGTTGGAAACGGGAACGTCTTCATGAAAAACCGCGACAGAACCATTCTCAGACACTTCGTTGTGCTGTGTGCATTCAAGTCACAGAGTTGAATATTCCCTTTCACAGAGTAGGTTTGAAACACTCTTTTTGTAGTATCTGGAAGTGGACATTTGGAGCGCCTTGACACCTACGGTGAAAAGGGAAATATCTTCCCATAAAAACTAGACAGAAGCAATCTCAG;SVTYPE=DEL;CHR2=9;END=67320763;SVLEN=-537421	GT	./.	E34900	contig1	size223	2	cov1.35	1204	128	0.453125	0	0	337	31	0.709677419354839	0	0	179600	9175	13.6767302452316	1872	43.6431623931624	67182	3139	14.5352022937241	686	43.963556851312	18	1	4	0
9	66971318	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCAACTCTGTTACTTGAGTACACACATCACAAGGAAGTTGCTGAGAATGCTTCTGTGTGGGTGTCAGGAGTACATACGTCCGCTTTCCCCATCGGCCTCAAAGCGCTGCAAATGTCCACTTCCAAATATTAGAAAAAGAGTGTTTCAAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAGAATGCTTCCGTCTAGATTTTATATGAAGATATTCCCGTTTCCAACGAAATCCACAAAGCTATCGAAATATCCACTTGCAGATTCTACAAAAAGAGTGTTTCAAAACTGCTCTATCAAAAGAAAGGTTTTACCCCTTTAGTTGAGGACACACATCACGAGTA;SVTYPE=INV;CHR2=9;END=69985375;SVLEN=3014058	GT	./.	E3742385	contig8	size378	3	cov1.20	1258054	46247	0.0419702899647545	40	38.65	427135	14312	0.0461151481274455	12	40.8333333333333	1342	8	0	0	0	478	1	0	0	0	3	0	4	0
9	69792579	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGCCTGGGCAGCGCTTTGACATACTTCAAGATGGCTTCTCGGAAGACTGGAGATAGCATCTTCTACAAGAATAGCTGAAAAGCTCATGAGTCCTTTAGGTATCCCCCAGACCAGTCAGAACAGACACATAGTAATTTGCGAGTAACATCTTCTCTTGTTCCTTTCGACCATGGACCAGTGTTCCTCACTGGGAACGTGGGCTCCCGACACTTCAAAACTGCCAATTTGCTGGGGCA;SVTYPE=TRA;CHR2=2;END=91977417;SVLEN=0	GT	./.	E4208783	contig11	size236	2	cov1.28	403	23	0.260869565217391	0	0	139	0	0	0	0	440	39	0.153846153846154	0	0	125	0	0	0	0	9	0	15	0
9	70930486	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATACGGCGACCCCCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCTGCGATATGGCCAGTAATATCATCGTCTCTACCTTTGGATACTAGGAACAACATCACAGAGGGTGTGTACACCCCCTGCGATACTGAGAGTAATATTATGCTCTCCCCTTCGGGATATTAGGAACAATATCTCAGGAGGTGTGTACAACCCCTGTGATAGATCGGAAGAGCGTC;SVTYPE=DUP;CHR2=9;END=70934303;SVLEN=3817	GT	./.	E4135329	contig1	size229	2	cov1.32	285	10	17.7	3	46	71	0	0	0	0	149	0	0	0	0	51	0	0	0	0	3	0	3	0
9	83033241	N	.	<TRA>	18	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCTTCAAATGGCCACACTACCTCTCCAGTAAGTTTATAAATCAGTCCAAGATAGCTAAAATTACAGAAATCAAATTCAGAATATGAATAGAAATAAAGATCATTAAAATGCAGAAGTAACTTGAAACTCAATTCAAAAACGTTAAGAATCATAATGAAATGATACAGGAGCTGAGAGACAAAAGAGCAAGTATTAAGAGCATAACTAACCTGAGAGAGCTA;SVTYPE=TRA;CHR2=11;END=100400425;SVLEN=0	GT	./.	E4055928	contig1	size222	2	cov1.36	560	5	6	0	0	112	0	0	0	0	149	65	23.5846153846154	17	45.3529411764706	34	22	21.0909090909091	5	42.8	12	0	12	0
9	83033281	N	.	<TRA>	18	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TCCTTCAAATGGCCACACTACCTCTCCAGTAAGTTTATAAATCAGTCCAAGATAGCTAAAATTACAGAAATCAAATTCAGAATATGAATAGAAATAAAGATCATTAAAATGCAGAAGTAACTTGAAACTCAATTCAAAAACGTTAAGAATCATAATGAAATGATACAGGAGCTGAGAGACAAAAGAGCAAGTATTAAGAGCATAACTAACCTGAGAGAGCTA;SVTYPE=TRA;CHR2=11;END=100400425;SVLEN=0	GT	./.	E4055928	contig1	size222	2	cov1.36	631	63	4.6031746031746	0	0	134	15	2.6	0	0	149	65	23.5846153846154	17	45.3529411764706	34	22	21.0909090909091	5	42.8	12	0	12	0
9	102243322	N	.	<TRA>	60	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGGCTAAACAGCATGTAGGAAGTCATAGCTGGGGGGATTACACCCCAGGGCCAAGGCCTGGTGAGGTTTCAGGGAGGAGGCCTGCAGGATCTGGGAGGGGAGGGTGGGCGTTTTCTAATGATACGGCCACCACCGAGATCTACACTGATGATTCCCAAATTTACATCTTTAGCTCAGACATCTTAAAAGAATTCCAGGTTTACAAAGCCAACCTCTTACAGGACACCTCCATTTGAATGTCCCATCAGTATTCAAACTCAACACGTCAGAAGCTGAACTTATTA;SVTYPE=TRA;CHR2=15;END=89373300;SVLEN=0	GT	./.	E2142865	contig1	size285	3	cov1.59	145	16	56	16	56	28	0	0	0	0	125	2	60	2	60	42	0	0	0	0	0	0	0	0
9	102830541	N	.	<TRA>	18	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGCTCTCTCTGTGCTCTCCTCTTCTGCCAGTCCATGCCGCCCTGCGGTCCCCTTCTCTCCCTCCTCCCTCCATTCTCATCGGACGCTGTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGTCTCTGCCCAGCCGCCCATCGTCTGAGACGTGGGGAGCGTCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTACCCGGCCAGCTGCCCCG;SVTYPE=TRA;CHR2=8;END=64092895;SVLEN=0	GT	./.	E1037721	contig3	size252	2	cov1.20	102	1	10	0	0	32	0	0	0	0	115	5	38.4	4	48	50	2	55.5	2	55.5	6	0	3	0
9	103011837	N	.	<DEL>	52.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAATATCAATGTCAAATTTTTTTAAAAAATAAAATTTCAATTAAGTAAAAGATAAAATTAATGATCATATTAAAGGAAATTCCCCATTTATGACTATTTGAATTTATTTTTATTTATTTATTTATTTGAGACAGAGTCTCACTCTCTTGCCCAGGCTGGAGTGCAGTGACCTGAGATTGAACCACTGCACTCCAGCCTGGATGACAGAGTGAGACTCCATCTCAAAAAAT;SVTYPE=DEL;CHR2=9;END=103012325;SVLEN=-488	GT	./.	E1144265	contig1	size230	6	cov3.94	95	6	47.6666666666667	5	57.2	44	0	0	0	0	92	12	38.75	6	57.3333333333333	33	0	0	0	0	606	208	586	211
9	109131113	N	.	<TRA>	35.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTGGAGAATTTAATTCATTTTTATGTAAGGTAATTATTATAGGTAATAACTTACTATTGACAATTTTCCATTGTTTTTAAACTTTTTTTTCTTTTTATCTTGCTGTCTTCTTTTGTAATTTGATGTTTTTTTTTTTTTTTTGTGTTTTTTTTTGGTTTTTTT;SVTYPE=TRA;CHR2=6;END=107705880;SVLEN=0	GT	./.	E2694011	contig1	size163	2	cov1.85	171	17	60	17	60	29	1	60	1	60	92	5	48.6	4	60	53	0	0	0	0	0	0	1	0
9	132732525	N	.	<TRA>	54.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTGACGTGGGGTCCCACTCTGTGGCCCAGGCTGGAGTGCAGTGGCGCGTTCTCGGCTCACTGCAACCTCTGCCTCCTGCATTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTGCAGACATGCACAACCAAGCCCAGCTAATTTTTGTATTTTTAGTGGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCGCCACCTCAAGCAATCCACCCGCCTTGG;SVTYPE=TRA;CHR2=1;END=180444576;SVLEN=0	GT	./.	E1124725	contig1	size239	2	cov1.26	139	16	43	11	55.5454545454545	28	1	29	1	29	161	1	48	1	48	41	1	1	0	0	0	1	1	0
9	133448968	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TACTTGGGAGGCCGAGGTAGGAGAACTGTGCGAACCTGGGATGCAGAGGTTGCAGTGAGCTGAGATTTTGCCATTGCACTCCAGCCTTGGCAACAAGAGTGAAACTCTGTCTTGGAAAAATAAATAAATAATAAATAAATAAATGAACTTCAAACCACAATGAGATGCTACAACACACCTATTAGAATGGCTAAAGTTGGCCAGGCGTGAGCCACCACGCCCAGCAATAAAACTGTTTAAAGAAATATTGGAGCCAGGCGAGGTGGCTCATGCCTGTAATCCTAG;SVTYPE=DEL;CHR2=9;END=133449504;SVLEN=-536	GT	./.	E507862	contig2	size285	9	cov4.77	156	12	57	12	57	37	0	0	0	0	90	14	55.5714285714286	14	55.5714285714286	29	0	0	0	0	645	178	630	173
9	137577045	N	.	<TRA>	3	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCCCATCCACCCATCCACCCATCCATCCCTCCCTCCACCCACCCCCCCATCCATCCATCCATCCACCCATCCACCCACCCACCTATCCATCCGCCTATTCATCCATCCAACCATCTGTTCATCCATTCATCCATCCATCCATCCATCCACCATCCATCCATCCACATCCATCCATTCATACATCCATCATCCTCCCATTCATCCATCCATCCACCATCCATCCATTCATTCATCCATCCATCCATCCATCCATCCCTCCACCCACCCACCATCCATCCACCCC;SVTYPE=TRA;CHR2=19;END=32576039;SVLEN=0	GT	./.	E2029293	contig1	size283	2	cov1.07	365	1	60	1	60	114	0	0	0	0	183	2	15	0	0	51	1	12	0	0	4	0	3	0
X	2955017	N	.	<TRA>	30	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATATTATATATAATATTATATATTATATATAATATTATATATAATACATATAATATTAAAATATATATTATATTATATATAATATTATATATAATATATATTATGTATACTGACTCATAAATACATACTGACTCATATATATATTATATAATTATATAATATATATTAAATTTTATATGTATATTATATATAAAGACTTTAGGTTACTGTTGAGAAGGCATGA;SVTYPE=TRA;CHR2=17;END=66955093;SVLEN=0	GT	./.	E932339	contig2	size223	6	cov4.06	9	0	0	0	0	6	0	0	0	0	31	9	53.3333333333333	8	60	10	2	30	1	60	4	0	3	0
X	5654005	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTCCCTCCTTCCCTCCCTCTCTCCTTCCCTCTTTCCTTGCTTGCTTTCGTGCTTTCTTGCTTTCCTTTCTTTCTCTTTCTTCCTTTTCTTTCTTTCTTTCTTTCTTGCTTTCTTTTCTTTCATTCATTCCTTCTTTCTTTTCTTTCTTTCTTTTCTTTTTCTTTCTTTCTTGCTTTCTTTTCTTTCATTCATTCATTCTTTCTTTCTTTCCTTTCTTTCTTTCTTTCTTTCTATCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTTTCGTCCTTTTG;SVTYPE=TRA;CHR2=12;END=70487524;SVLEN=0	GT	./.	E3882819	contig2	size286	2	cov1.06	82	0	0	0	0	24	0	0	0	0	105	9	52.4444444444444	8	59	34	1	60	1	60	3	0	4	0
X	6270949	N	.	<TRA>	30	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATATATACAATATATATAATATAAAAAAAATATATAAACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATAGAAAGAGAGAGAGAGGATCCATTTGGAATATGTAGGAGAAAGAATTCTGATAGGTGGACTCTCAATTTCTTTTTACTATTCAT;SVTYPE=TRA;CHR2=18;END=10691781;SVLEN=0	GT	./.	E2638067	contig3	size203	4	cov2.98	57	0	0	0	0	17	0	0	0	0	71	41	36.219512195122	26	54.1153846153846	44	2	60	2	60	5	0	4	0
X	8789084	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCATCATCATCCCATTCATCACTGTCTTTGTCATCACCATCACCATCACCATCATCCTCATCATCACCACATTCACTGTCATCACTATGTTTGTCATCACCATCACCATCATCATCACATTCATCACTGTCTTTGTCATCACCATCATCACCATCACCATCATCCTCATCACATTCACTG;SVTYPE=TRA;CHR2=2;END=232443615;SVLEN=0	GT	./.	E4285867	contig1	size180	2	cov1.68	78	7	0.142857142857143	0	0	18	3	0	0	0	211	3	0	0	0	83	2	2	0	0	7	0	14	0
X	31196942	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATGGAAAGCAATAGCCAAACCAAGGTGTAAAGTGAATTAAAAGAAAAACACACAGTTGTGTGACTGCCATCAGAGTTAAGGCAAAAAAGAGGAGCAGGTTGAAAAGAGGTGAAGACGTCCCCTTTGATCTTGAGAATCATTACTACTTACTGTGAAGTAGTTTCCTGTGACTATATTTTCTTTTGAGTAGAAACAAGTGACTAGATATGACCACACAATGAGATACAAAAAGACACACATTTACTGATTTGTGAGAGAGGAAAATCAAAATGAAATACTGGAATCACTCATTTGTAAACAGTCCCATATTTCTTATAAGGCTTGTAAGGCAATTAGTGGCTGTATTGTGTTGTGGTTTTTTTTTTTTTTCCCCCTGTGAGATAAAGTTTAACTTTTGGAAAAAGAAATTGTCAAGTGACGTGGGAAAGTGGCAACTGGACATCAGCTTATTTTTCTCTTTTCAGCTAATGTAAATAAAAAGAAAGAAATAGAAGAGACTGTTTGCATTTGGGAGTGAAGGAGGGTGTTCAGCTGAGAGGAGTTCAAATATACATCAAACAAGAGTGTGTTCTGCTTTTGCTACTACTCACGTTTCCATGTTGTCCCCCTCTAAGACAGTCTGCACTGGCAGGTAGCCCATTCGGGGATGCTTCGCAAAATACCTTTTGGTTCGAAATTTGTTTTTTAGTACCTTGGCAAAGTCTCGAACATCTTCTCCTGATGTAGTCTAAAAGGGAGATCATGGTGAATGTAGTGAATGTAGTGAAGATCGGGGGATAAAAAAGGGATGGTTAATGGGTACAAAAATACAGTAAGAAGAAATATGATCTAGTGTTTGGTAGCACAATAAGGCCACTATAGTAATCAATATATTTTTAAATCTTTTTACAGATAGGG;SVTYPE=DEL;CHR2=X;END=31216211;SVLEN=-19269	GT	./.	E2517544	contig2	size898	50	cov8.41	85	48	59.2708333333333	48	59.2708333333333	17	0	0	0	0	47	44	57.9545454545455	44	57.9545454545455	20	0	0	0	0	23	0	19	0
X	31196943	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCACTGGCAGGTAGCCCAGTCGGGGATGCTTCGCAAAATACCTTTTGGTTCGAAATTTGTTTTTTAGTACCTTGGCAAAGTCTCGAACATCTTCTCCTGATGTAGTCTAAAAGGGAGATCATGGTGAATGTAGTGAATGTAGTGAAGATCGGGGGATAAAAAAGGGATGGTTAATGGGTACAAAAATACAGTAAGAAGAAATATGATCTAGTGTTTGGTAGCAAAATAAGGCCACTATAGTAATCAATATATTTTTAAATCTTTTTACAGATAGGGTCTCACTA;SVTYPE=DEL;CHR2=X;END=31216211;SVLEN=-19268	GT	./.	E2517544	contig3	size284	2	cov1.06	84	48	59.2708333333333	48	59.2708333333333	17	0	0	0	0	47	44	57.9545454545455	44	57.9545454545455	20	0	0	0	0	23	0	19	0
X	31301203	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATCATTATTTTAAAAGGCTTATCTAAAATAAGGTGTTCTTTGAACCAAGTGGAGTCTGATTTCCAATTTTAGAATGTTTCCACATTTAACACTGACATTCATTATCCTGAAAATGAAGGCAGATACACATAATATCTATATGTATTTTAAATAAAATTGGTTCAATAATTTTTCTCAAATTTCATAACTTTTTCTATGAATCAATGTGTCAACTCATTTTTTCAACTTTTCAAACTGAAAGAAATTCCATTGATCTTTAATAATAATGAATTTAATCAAATTATTCATTATTATAAACTCACCAGAAACCAACCCTGTCATCACCTTAATCTTAGACGTTCAACTTCCGGAACTGTAAGAAATACATTTCTGTTGCTTAAGCCACCCAGTGGGTGTTTACCTTGCTTAAGTCATGGATATTTTGAAATTTTTATATACAAACAAAAGTAATGCCAATTAATAATTATATCTATTTAACAACTAGCTATATATTTTATATATCCAAAGTTAATCAACCGAATTGACCCAGTAAGTGTAATCTTTGCTTATGTAAACAATACAAACCCTTAGCTCATTTAGATTGGCTCCAATAAAATATTTTTTAAATTCAGTTAAAGTCTTAAACATGGATCACTTACATAGCAAATATGTGTGCACTACAAATTGCAGCTAATCAATCATTTCTATTTATGTGTGCATACCCTATGACCTGACAATACTACTAGCGAATACTGTTGAGAAATTTTTAAACATGCACTATAAAACATATACAAGAACACATGTGTGTTGTGGTTTGTGATGAACAAAAACATAAAAACAACCCAAATGTCCATACGCATGTAAAATATATACATTGTGTTATATACATACAATGAGTTGCACATTGATCAACGTAAATATGTAAAACAT;SVTYPE=DEL;CHR2=X;END=32038750;SVLEN=-737547	GT	./.	E1064547	contig1	size910	43	cov7.14	83	32	57.84375	32	57.84375	31	0	0	0	0	41	32	51.75	28	56.7142857142857	19	0	0	0	0	16	0	16	0
X	32077855	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTCCCATGTTTATTGTAGCATTTTTACAGTAGCCAAGAGGTGTGAACAAACTAAATGTCTATTGACAGGGGAATGTATAAAGCTATGTTATATACATACAATGGAATATCATTCTGCCACAAAAAGGAAATCTTACCATATGCTACAATGTGGATGAATCTTGTAGCCATTTTGCTAAATAAAATAAGCAAGTCGTAAAAGGACAAATACTGCACGCATCCACTTACATGAGGTATCTAAAGTAGTCAAAATTATAGAAACAGAAAGTACAATGGTGGTTGCTAAGGGCTGGAGGAGGGAAGAAATGGTGAGATGCTGTGCAATGGGTATAGACTATCAGGCATGTAGGGTTAAAAAAATTATAAAGATCTGCTATGCAACATTTTGCTTATATTTAACAATACTGTATTGTGCACTTAAAATTTATTAAGAGGGTGGATTTCATTAAAAAAATAAAAACAAGTGCTTCATTAAGAAAAAAACATCTTTTTCAACACATACAATTCTTTGTTAATGAACTTAATCATTGAATGCCAACTGGTTGGGAAATGGTATACCTGACAACATAGAAAGCCATCAGACAGCTAACATGGTATTTGCAACTTCTCGTGAGGGTGGGAGCACCATAAACACATATATGAAGAGATAATAAAAGTCCAAGGCAACAATATAAGATGTAGCATAAGTGACCTCGTAATGAACTGAAATAGATATTAAGTTGATATTAAATGTTGTGTATCAACGGCAGTGTGAGATCATTGTGAACTAGAATAGTGTAGCATATCTTTTGGACTAAGGTAGATTATTCCAGGCTTTAAATTCCGAAATATTTAGAGAGTAAGAAGGACATAGAGAGACCATTCAGACAACAGTTGCAACGGAAGTAGACTTGAAGGCCAGAAAGAGCTCAGCATGCACAGGGATAAAACAGGAAGAGCCCAGTGGGCTCATTTTGGGTTGCTGGGTGGAAACAAAATCTCCTCTATTTGGCTCACAATCACTCTCTCAGTGGTGTGCAAAATGCAATGACTGGCCAGTGAATGATATTTACAATAGCTAGGGATTATCTTAGATTATACAGCCTTCAGCAGAAACATAAACACTTGAACAGAGCAGTGTGAAATAGAAGATAGT;SVTYPE=DEL;CHR2=X;END=32293097;SVLEN=-215242	GT	./.	E4423272	contig2	size1135	41	cov5.45	76	33	58.5151515151515	33	58.5151515151515	19	0	0	0	0	36	28	58.6428571428571	28	58.6428571428571	24	0	0	0	0	18	0	19	0
X	32098533	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGTTTACTTAATTCACAATGGCTAGGACTTGCCAATGGGTATAGACGCCACCAGAAACTGGTGAACTATTTTTTAAAATCTCATAATATAAGAGGAATCATATTATTAACTGGCCACTATTCTGAGTTTTGAAAAACATTTTACAACTTTAAAAAATGATTCAAATAAAGCAAGGAGACGAGTAATGCAAGTAATGCCAAGTATGACTTGTGTTTATCTAATAATGGACTTTGTTACTTATAGCCACATGGAATTTTAGGGCTGCAAACAACAAGGAGAGGCACCTCCTTCTGTAATCACAGTGTTGCTATAATTACAGACAAAGGTTTGTCAGCATTTCCATTAAAAGAACTTAACTAAGCTGTTAAATGTCCATTAGCCTAATATATGGCTTATAATATCTTAGCTAACTGCATATTAAAAACAAACCATAACATTTTCAAGAACTGTATTTTATCATTTCTTATGATCCCTGCCAACTTACTCACAATATTATCAGTAGCCTAGACATTCACTAAATGCCAACTGTGAACAAGTGAAGCCTTTAAGACTTGGATGGTGTT;SVTYPE=DEL;CHR2=X;END=32201251;SVLEN=-102718	GT	./.	E2968266	contig1	size563	22	cov5.90	30	24	56.7083333333333	24	56.7083333333333	20	0	0	0	0	4	31	57.4838709677419	31	57.4838709677419	10	0	0	0	0	18	0	19	0
X	34059778	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAAGATTACCCAATTTACTGGCTGAATAGCCTAAAGATTGATTTTTCTTATATTTAACCAAATGCTTAAATCGCCTCAATCAAGAGTGATATGGTTTGGCTGTGTCCCCACCCAAATCTCATGTTGAACTGTATTTTGCATAACCCCCATGTGTCATGGGAGGGACCCAGTGGGAGGAAATTGAATCATGGAGACAGTTACCTCCATACTGTTCTCATGATATTTAGTGAGTTCTCATGAGATCCAATGGTTTTAGAAGGGGCTTCCCCCGCCTTTGCTCTGCATTTCTCCTTGCTGCTGCCATGTGAAGAAGGACATGTTTACTTCCTGTTCCACCATGATTGTAAGTTTCCTGAGGCCTCCCAGTCCTGTGGAGCTGTGAGTCAATTAAACCTCTTTCCTTTGTAAATTATCCATTCTCAGGTATGTCTTTATTAGCAGTGAGAACAGACTAGTACAAGGGGTGATTTTGTCCCCCAAGGGAAATTTGACCATATCTGGAAATAGTTTTGGTTGTCACAACTGTTGGGTGCTACTGGCATTTCATGGCTGGATGCTAAGGAATCTGTTAATATATTAGGTTGGTGCACAAGTAATTGCGGTTTTTGCCAAATGGCAAAAACCGCAATTACTTGTGCACCAACCTAATACTATAATGCACCAGATGCATTATAGTATGAATGAAGAGACCACCCACAACTTAGGAGAAAATATTTGCAAACCATATGTCTGATAAGGGGCTAATATCCAAAATATATAAGGAACTCA;SVTYPE=DEL;CHR2=X;END=34062705;SVLEN=-2927	GT	./.	E2885059	contig2	size768	20	cov3.93	31	27	48.4074074074074	26	49.1923076923077	15	0	0	0	0	0	39	52.025641025641	39	52.025641025641	29	0	0	0	0	17	0	14	0
X	40521679	N	.	<TRA>	29	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTTTTAGAGACAGAGCCTCATTGTCACCCAGGCTGGAGTGCAGTGGCATGATCAAATCCCACTGCAGTCTTGAACTCCTGAGCTCAAGCAATCCTCTTACCTCAGCCTCACAAGTGTCTGAAAATACAGGCACATGTCTCCCTGCTAACTTTTTTAAATTTTCTTGTAGAGAGAGGGTCTTGCTATAGCTGCTCAAGCTGGTCTCAAACTCCTGGTCTCAAGTAATCCTCCTGCCTTGGCCTTTCAAATCTCAGCCTCCCTGGCC;SVTYPE=TRA;CHR2=3;END=191962919;SVLEN=0	GT	./.	E697584	contig1	size266	2	cov1.14	167	0	0	0	0	46	0	0	0	0	171	36	13.1388888888889	1	39	42	14	14.6428571428571	2	35.5	4	0	17	1
X	42828498	N	.	<TRA>	25	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGTTTAGGTACATGAATATACATGTATATACATGAGATATATATATATATATATATAAAATATATATATATATATTATATATATATATATATAATATATATATATATATATTTGAGATGGAGTCTCACTCTGTTTCCCAGGCTGGAGTGTAGT;SVTYPE=TRA;CHR2=6;END=20232263;SVLEN=0	GT	./.	E3251915	contig1	size154	2	cov1.96	23	5	45.2	3	60	7	2	46.5	2	46.5	32	1	23	0	0	13	0	0	0	0	4	0	5	0
X	42828518	N	.	<TRA>	25	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGTTTAGGTACATGAATATACATGTATATACATGAGATATATATATATATATATATAAAATATATATATATATATTATATATATATATATATAATATATATATATATATATTTGAGATGGAGTCTCACTCTGTTTCCCAGGCTGGAGTGTAGT;SVTYPE=TRA;CHR2=6;END=20232263;SVLEN=0	GT	./.	E3251915	contig1	size154	2	cov1.96	31	12	29.1666666666667	5	60	8	5	38.6	4	48.25	32	1	23	0	0	13	0	0	0	0	4	0	5	0
X	54458403	N	.	<DEL>	60	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GATCGAGACCATCCTGGCCAATATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTTGCCGGGTGAGGTGGCACGTGCCTGTAATCTCAGCTACTTAGTAGGCTGAGGCAGGAGAACCACTTGAATCCGGGAGGTGGAGGTTGCAGTGGCAAGATCACGACTCACTGCAGCCTCGAACTCCCTGACTCAAGCACTCCTCCCACCTCAGCCTCCCAAGTGTAGCTGGGACTATAGGAGTGCACACCATACCC;SVTYPE=DEL;CHR2=X;END=54458563;SVLEN=-160	GT	./.	E1169998	contig2	size254	7	cov4.16	37	7	49.2857142857143	6	55.5	8	0	0	0	0	67	7	55.5714285714286	7	55.5714285714286	16	0	0	0	0	214	62	223	65
X	58477320	N	.	<DEL>	10.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTGATACACATTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTGTTCCGATCTGTCTTTTTGTAGTATCTACAAATGGATATTACCAGTGCTTTGAGGCCTATGGTGAAAAAGGAAATATCCTCACATAAAATTCAGATGGAAGCATTCTTAGAAACTCCTTTGTGATGTGTACATTCATCTCACAGACTTCAAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCT;SVTYPE=DEL;CHR2=X;END=61876796;SVLEN=-3399476	GT	./.	E1230592	contig2	size254	2	cov1.19	3571	14	26.2857142857143	6	45	1002	2	28.5	1	51	340	2	0	0	0	96	1	0	0	0	4	0	4	0
X	58544819	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTGTGACGGGTGCATTCATCACACAGAGTTGAACCTTTCTTTTGATTGAACATTTTTGAAAAACTCTTTTTGTATAATCTGCAAGTGGATATTTGGAGCGCTTTGAGGCCCTTGCTGGAAAAGGAAATATCTTCCCATAAAATCTAGACAGGTGATTCTGAGAAGCTCCCTTGTGATGCGTTCCTTCATCTCACAGAGTTGTACATTTCTTTTGATTGA;SVTYPE=DUP;CHR2=X;END=61794767;SVLEN=3249948	GT	./.	E2885461	contig1	size220	2	cov1.37	2103	74	10.5405405405405	10	37.1	688	26	16.5384615384615	9	36.6666666666667	2951	193	9.65284974093264	23	32.0434782608696	989	59	7.3728813559322	4	30.5	3	0	3	0
X	58563931	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TAACCGCATCCCCGCTTGCATTTTTCTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTATCCCAAAGAAGTTTCTGAGAATGCTTCTCTTTAGTTTTTACGTGAACATATACCCGTTTCGACCGAAGGCCAGACAGTGGTCCAAATATCCACTTGCAGATTCTCGAAAAAGAGTGTTTCATAGCTGCTCTTTCAAAAGGAAAGTTCAACTCTGGGAGTTGAATACAAACATCACAAAGTAGTTTCCGAGAAT;SVTYPE=DEL;CHR2=X;END=61700384;SVLEN=-3136453	GT	./.	E408083	contig17	size284	2	cov1.06	1158	8	0	0	0	338	5	0	0	0	232	79	0.721518987341772	0	0	68	25	0.56	0	0	24	1	15	0
X	61714921	N	.	<DEL>	2	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTTTCCACCACAGGCCTCAAAGCCCTTCAAATGTCCACTTGCAGATTCTAGAATAAGAGGGTTTCAAAGCTGCTCTGTCTAGAGGAAAGTTCAATTCCTGAAGTGGAACGCAAACATCACAAAATAGTTTCTGAGAATGCTTCCATCTAGTTTTTATGTGAAGATTTTCCTTTTCCACCACAGGCCTCAAAGCCCTCCAAATGTCCACTTGCAGATTCTAGAATAAGAGGGTTTCAAAGCTGCTCTGTCTAGAGGAAAGTTCCGTTCCTGCAGTGTAACACAAAA;SVTYPE=DEL;CHR2=X;END=61720883;SVLEN=-5962	GT	./.	E78100	contig1	size285	2	cov1.06	3805	7	0	0	0	1020	4	0	0	0	26833	34	4.05882352941176	2	36	11031	12	4.5	0	0	9	0	16	0
X	73787697	N	.	<TRA>	16	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAATAAAAAAAAAAATAAATAAATAAAAAATAAAAAATAAAAAATAAAAAAATAAAAAAATAAAAATAAAATAAAATAAAAAAAAGGAAAAAAATAAAAAAAATAAAAAAAATAAAAAAAAAAAAAAAAAAAAGGGCTTTTCTGGAAGGGATTCATCTCAGGACCTGGGCCCCTACTA;SVTYPE=TRA;CHR2=2;END=209033488;SVLEN=0	GT	./.	E3638027	contig1	size178	2	cov1.70	161	2	0.5	0	0	58	0	0	0	0	203	8	39.5	4	60	56	1	19	0	0	11	0	4	0
X	74490934	N	.	<TRA>	60	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGACCTCTACAAGAAAAACCACAAAACACTGCTGAATGAAACCACAGATGACACAAACTAACGGAAACACATCTCATGCTCATGGATGCATCGGTAGAGTTAACACTGTTTTTAATGATACGGCGACCACCGAGATCTACACATTCAATGCAATTCTCATCAAAATACTAATATCATTCTTCACAGAATTAGAAAAAACAATTCTAAAATTCATATTGAAGCAAAATAGCCCATATAGCCAAAAAGAATAAATCTGGAGGCATCATATTACCTGGTTTCAA;SVTYPE=TRA;CHR2=7;END=64760488;SVLEN=0	GT	./.	E3500465	contig1	size282	2	cov1.07	86	7	58.4285714285714	7	58.4285714285714	25	0	0	0	0	165	5	56.6	5	56.6	40	0	0	0	0	1	0	0	0
X	79792424	N	.	<TRA>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTTTTTTTTTTTTTTTTTTTTTTGCGGTTTTAACTAAATCCTAAATTTTTTTTGGGTTACAAGTCCCCAAACTAATGCTTTCAAATTTTTTTTTTTTTTTTATTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTATTTTATTTTTTTTTTTTTTAATTTTTTTTTTTTTTAATAGTTTTGGTAAGATATAAATATTTAAAAAGAGGGTATTAATATTTAAATAGTATAGAAAAAAAATATAGCAGTATTT;SVTYPE=TRA;CHR2=8;END=112168232;SVLEN=0	GT	./.	E3371248	contig1	size286	2	cov1.06	111	1	0	0	0	43	0	0	0	0	217	64	0.9375	1	60	82	31	0	0	0	6	0	11	1
X	81316121	N	.	<TRA>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=;SVTYPE=TRA;CHR2=7;END=100388995;SVLEN=0	GT	./.	E2890572	contig1	size548	15	cov4.13	83	2	0	0	0	19	1	40	1	40	145	0	0	0	0	42	0	0	0	0	4	0	3	0
X	117178397	N	.	<TRA>	49.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAGAAATCCCAAAGCAAGACTGAAAAAAAAAAAAAAAAAAAGGAAAATCAGAAGAATCACATTACCTCACCTCAAATTATACTCTAGAGCTACAGTAACCAAAACAGCATGGTGCTGGAATAAGAAAAGACACATAGACCAATGGAACAGAATAGAGAACCCAGAAATAAATC;SVTYPE=TRA;CHR2=10;END=35224915;SVLEN=0	GT	./.	E3010828	contig2	size173	2	cov1.75	51	11	60	11	60	16	1	60	1	60	74	0	0	0	0	25	0	0	0	0	0	0	1	0
X	129697093	N	.	<TRA>	6.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TTGCTTCCCTTTCCTTCCCTTCCCTTCCCTTCCATTCCATTACATTACATTCCCTTCCATTCCATTCCATTCCCTTCCATTCCATTCCGTTCCATTCCACTCCGGTTGATTCCATTCCATTCCATTCCATTCCATTCCATTACACTAAATTCCATTCCATTCCACTCCATTACATTCCACTCCACTCCACCCGGATTTATTCCATTCCATTCCATTCCTTTCCATTCCATTCCAGTTGATTCCATTGGATTCCATTCCTATCCAATCCATTTCATTCCTTT;SVTYPE=TRA;CHR2=4;END=49101298;SVLEN=0	GT	./.	E4244425	contig16	size281	2	cov1.07	47	1	0	0	0	9	0	0	0	0	6880	17	8.29411764705882	1	43	2037	6	0.833333333333333	0	0	3	0	12	1
X	136015247	N	.	<TRA>	15	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTTCGTGCCTTGTGAAAACTTGCTTATAGACTTTACCAAAATGCCCCGTGCCAGAGGCTATCCGTTTATGCTAGTGTTTATTTGCACTTTTTCAGGATAGGTTGAGGCATTCCCCACCAAGACAGAAAAGCACGAGAAATGACTAAAGTACTACTAAAAGACATTATCCCTAGGTTTTGACAGCCTGTAACTTTAAAGTCAGACAATAGGCCAGCATTTGTAGCTGAAAGAGT;SVTYPE=TRA;CHR2=13;END=99419389;SVLEN=0	GT	./.	E2597747	contig1	size234	2	cov1.29	88	21	5.71428571428571	1	31	30	5	0	0	0	217	52	5.01923076923077	3	33.6666666666667	73	8	4.5	0	0	5	0	3	0
X	141107439	N	.	<TRA>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGTCACCCGCCAACACATCCTACTAATTTTTTGTGTTTTTAGTAGAAATGCGGTGTCGCCATGCGGCCCAGGCTGGTCTTGAACACCTGACCTCATGATCCACCTGCCTCCACGGCTGAAAGTGCTGGGATTACAGACTTGATCAACCGCGCCCAGCCAAATATCTTCTTTTGAAAAGAGTCTGTTTATATTCTGTGCCCACTTTTTGATGGTTTTTTTTTGTGTGTGTGTGAATTTGTTTAAGTTCTTTGTAGATTCTGGATATTAGACCTCTGACACATGGATAGAGTGCAAAAATTTTCTTTCACTCTGTAGGTTGCCTGGTCACTCTGGTGATAGCTTCTTTTGCTGTGCAGAAGCTCGTTAGTTTAGTTAGATCTCATTTGTCAATTTTAGCTTTTGTTGTGAT;SVTYPE=TRA;CHR2=1;END=25075504;SVLEN=0	GT	./.	E2356643	contig1	size410	7	cov2.58	407	20	0	0	0	102	3	0	0	0	76	0	0	0	0	32	0	0	0	0	20	1	19	1
X	148502574	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGCCCCGCCGGCCGCCCCGTACGGGGCGGCGGCCGGGGGGCCGCCCCCTCGCCCCCCCCGCCTTTTTTAATGATACGGCGACCGCCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCTGCCCGGCCAGCCGCCCCGTCCGGGGGTCGGAAGAGCGCACGTCCGCACCCCCGTCCCGACCGGCCCGCGTGGGCCGGCGTCGGCTTGAACAGCCCCCCGCCCCGCCAGCCGCCCCGTCCGGGAGGGCGGCGGGCGGGCCGGCCCCCCGC;SVTYPE=TRA;CHR2=2;END=135791036;SVLEN=0	GT	./.	E4088450	contig1	size277	2	cov1.09	77	1	15	0	0	22	0	0	0	0	115	24	16.625	9	39.4444444444444	45	12	19.5833333333333	5	40	13	1	5	0
Y	5009128	N	.	<TRA>	20.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGCTGAGATCACGCCACTGTACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCAAAAAAAAAAAAGGGAGAAAAGGGGCCAGGGATTATTTGGAGCAATGGCTGATTCCAGCCTAAAACAGAAAATGTATGTGATAAGCCAGGACCTCTTATAGCACAAAACAAGGAAAGTGCTCAAAAAAAGCATGGTGGCAGGAGATGACTTGAAGTGCTATGAACTGATGAATCCGGGATACTTCGATCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCAT;SVTYPE=TRA;CHR2=12;END=129771777;SVLEN=0	GT	./.	E1387302	contig1	size347	15	cov6.53	33	19	4.78947368421053	1	54	23	0	0	0	0	100	46	32.2173913043478	24	60	43	0	0	0	0	18	0	16	0
Y	9956770	N	.	<TRA>	20.5	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATACCCCCTCTCCGCGGCGTCGCCTTTCCTAAGCCCCTCGCGCCACCTTACGACAAACACCCACAGGTGTGGAGGGGCACCCCACCCCTACACTATGTGAGGGACAAACCTTCAGACCACAGCAGGAGTGTTCTGGAATCCCCTGTGAGGAACAAACATTCAGACCCTCGTAGCAGTGTTCTGAAATCCTATGTGACAAACGTTTAGA;SVTYPE=TRA;CHR2=11;END=10412852;SVLEN=0	GT	./.	E875733	contig1	size209	2	cov1.44	8300	185	18.4864864864865	41	39.4634146341463	2448	41	16.0243902439024	8	34.125	112	47	0.0425531914893617	0	0	32	8	0	0	0	4	0	23	0
Y	13138838	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAGAGGGATGGAATCGAGTGGGGAGGGGTGGAATGGAATGGAGAGGAATGGTATGGAATGGAATGTAGTGGAAGGGAATGGGATGAAATGGAGTGGAGGGGAATGGAGTGGAATGGAATGGAGTGGAATGGAGTGGAGTGCAAGGGAGTGTAATGAAGTGGAGAGGAATGGAAGGGAATGGAATGGATTGTAGCGGAATGG;SVTYPE=INV;CHR2=Y;END=28812153;SVLEN=15673314	GT	./.	E3680192	contig5	size201	2	cov1.50	5276	45	2.93333333333333	1	36	1737	14	1.21428571428571	0	0	401	19	0.526315789473684	0	0	210	5	3.6	0	0	3	0	3	0
Y	13139549	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GCCCCTCCACCCCACTCTACTCTACTCCACTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCACTCCCCTCCACTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCACTCCACTCCACTCCACTCCACTCCATTCCATTCGGGTTGATTCCATTCCATTCCATTCCATCCCAATCGGTTTGATTCCTCTCCATCCCAATCCATTCCATGCCGTTACAGTCCAGTCCATTCCATTGCACTTGGGTTGATTCCATTCCATTCCATTCCATTCCATTACATTACATTCCATTCCACTAAATTCCATTCCATTCCACTCCATTACATTCAATTCCACTCCACCCGGATTTATTCCATTCCATTCCATTCCATTCCAGGTGATTCCATTGGATTCCATTCC;SVTYPE=INV;CHR2=Y;END=13858759;SVLEN=719211	GT	./.	E1240358	contig4	size408	3	cov1.11	4304	87	3.68965517241379	1	40	1442	34	4.73529411764706	1	30	2316	134	2.3134328358209	1	31	899	41	6.51219512195122	0	0	3	0	3	0
Y	13196469	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AGGAATGGAATGGAGTCGACAGGAGGGCAATGGAATGTAATGGAAAAGAAAGGAATGGAATGTAGTGGAGTGCAGTTGAGTGGAATGGAGGGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGACTCAAAGGGAATGTACTTGAATGGAATGGAATAGTTTGGAAAGGAATCC;SVTYPE=INV;CHR2=Y;END=13818202;SVLEN=621732	GT	./.	E3967968	contig1	size183	2	cov1.65	1755	71	6.50704225352113	0	0	585	12	6.5	0	0	1581	60	1.63333333333333	1	60	641	22	0.5	0	0	6	0	3	0
Y	13253178	N	.	<TRA>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AAAAAAAATTCGCCGCCAAGAAGCGTTCCTGGTTCCCCCACGGACGAAAGTGCCTTCCCGTCAGTCCCTGCGCTGGGCCTGGGATACTCTGGCGGCCCTGGCTCGAACCCAGAGAGCGACTCAGGCCCGCTAGGGGTACGCCAAAGCGGGCAGAAGGCCCCGGAGGGGAAGGTTAGGTTTGAGGAAAGGGAGGTGAGGCACCGGTGGATGAAAAAAAAAAAAGAAAAAAACTCAGCGTCGAGACGCATTCCTGGGTCCCCCACGGAAGAAAGTGC;SVTYPE=TRA;CHR2=1;END=143276426;SVLEN=0	GT	./.	E1985445	contig1	size275	2	cov1.10	231	7	6.14285714285714	0	0	80	2	20	1	40	183	1	52	1	52	55	0	0	0	0	3	0	12	1
Y	13453699	N	.	<INV>	1.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CTAATGGAATCGAATTGAATGGAAAAGAATCGAAAGAAATGGAAAGGAATGGAACAGAACGGATTCGAATGGAAAGGAATGGAATCTAATGGAATGGACTGGAAATGAATGGATTCGAATGGAATGGAATCGAATGGAATGGAGTCATATGGAATGGAATGGAATGGAACAGTCTCAAGTGGAATGGAATGGAATAGAATGGAATGGAATAAAATGAAATTGAATGGAATCTCATGGAATTGAATGGAATGGAATGGAAT;SVTYPE=INV;CHR2=Y;END=13722283;SVLEN=268583	GT	./.	E138636	contig1	size260	2	cov1.16	66914	471	5.52653927813163	30	35.3666666666667	22166	176	5.55681818181818	13	39.0769230769231	39	27	10.4074074074074	3	33.6666666666667	330	11	13.4545454545455	2	41	7	0	11	1
Y	13649005	N	.	<DUP>	20.5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTACCATGGCATGGCATGCGATGGAATGGAATGGAATCGAAAGGAAAGCAGCGGAAGGGAATGGAGGGGAATCAAGTGGAAAGGAATGGAATGGAATGGAATGTAAAGGAATGGAATGGAATCGAATGGAATGGACTGGAATGGAATGGATTGAACGGAATGGACTGGGGAGGAATGGACTCGGATGGAAAGGAAACGAGTGGAATGGAATGGAGTGGAATGGGTTGGAATGGAAAGGAAAGGAAAAGAATGGAATGGAATGGGATGGCATGG;SVTYPE=DUP;CHR2=Y;END=13853013;SVLEN=204008	GT	./.	E1311706	contig1	size273	2	cov1.11	8974	191	1.76439790575916	0	0	3786	97	3.68041237113402	4	37.75	255	28	2.39285714285714	1	40	110	11	3.63636363636364	0	0	4	0	5	0
Y	13653714	N	.	<DEL>	6	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTATGGAATGGAATCGAAAGGAAAAGAATTGAATGGAATGGACTGGAACAAAATGGAATTGAACGGATTGGAATCGAACAGAATGAAACGGAATGGAATGGAATGGAATGGAATGGACTGCAGCGGAATGGAGTCGAATGGAAAGTAATCGAATGGAATG;SVTYPE=DEL;CHR2=Y;END=13664646;SVLEN=-10932	GT	./.	E949797	contig1	size160	2	cov1.89	121	2	11	0	0	72	0	0	0	0	157	46	6.04347826086957	0	0	66	41	4.95121951219512	0	0	5	0	6	0
Y	13658875	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATAAGAAATGAAAAGAATGTAATGGAATCGGATGGAATGGAATTGAATGTATTGGAGTCGAGTAGAACAGAATTGAATGCAATGGCATCAAATGGAATGCAAACGAAAGGAATGGAATTGAATGGACTCAAATGTTATGGAATCAAAGGGAATGGACTCAAATAGAATGGACTCAAAAGAAATGGTCTTGAATGGAACTTATTCGAATATAATGTAATCGAATGGAATGCAATAGTATGGAATGGAATCGAATGGAATGGAATCGAATGGATTGGAACGAAATCGAATGGAACGGAATAGAATAGACTCGAATGTAATGGATTGCTATGTAATTGATTCCAAAGGAATGGAATCGAATGGAATGCAGTCCAATGGAATGGA;SVTYPE=DEL;CHR2=Y;END=13662021;SVLEN=-3146	GT	./.	E1007397	contig1	size381	4	cov1.59	6747	297	1.95286195286195	7	34	2618	112	2.03571428571429	1	29	390	37	5.13513513513514	2	32	182	12	1.83333333333333	0	0	3	0	3	0
Y	13664421	N	.	<DEL>	1	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTGGAACGGAAATCAATGGAATGGAATAGAATGCAATGCAATGGAAAGGAATGGAGTGGAATCGACAAGAATGGAAAAGATTGGAATGGAATTGAATGGAATGGAATCGAATGGAATGGACTGGAATGCAATGGACTAGAATTGAATGAATAGGAATGGAACGGAACGGAATGTAACGGAATGGAATGGAATGGAATCGAATGTAATGGAGTCGAATGGAATGGAACCAAATTGAATGAAATCGAATGGAAAGGAACTTAATGTAATCGAAAGG;SVTYPE=DEL;CHR2=Y;END=13834564;SVLEN=-170143	GT	./.	E3274699	contig1	size276	3	cov1.64	1838	31	2.87096774193548	0	0	628	10	8.2	1	31	185	13	5.61538461538461	1	40	88	2	0	0	0	4	0	4	0
Y	13683089	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGGATTGAACGGAATGGACTGGAGAGGAGTGGACTCGACTGGAAAGGAAACGAGTGGAATGGAGTGGAATGGCTTGAAATGGATAAGAAATGAAAAGAATGTAATGGAATTGGATGGAATGGAATTGAATGTATTGGAGTCGAGTAGAACAGAATTGAATGGAATGGCATCGAATGGAATGGAAACGAAAGGAAGGGAATTGAATGGACTCAAATGTTATGGAATCAAAGGGAATGGAGTAAAATAGAATGGA;SVTYPE=DEL;CHR2=Y;END=13863356;SVLEN=-180267	GT	./.	E2110502	contig1	size254	2	cov1.19	247	3	0	0	0	126	1	0	0	0	1058	104	1.48076923076923	2	40	392	62	4.54838709677419	4	54.5	6	0	3	0
Y	13683134	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATGGATTGAACGGAATGGACTGGAGAGGAGTGGACTCGACTGGAAAGGAAACGAGTGGAATGGAGTGGAATGGCTTGAAATGGATAAGAAATGAAAAGAATGTAATGGAATTGGATGGAATGGAATTGAATGTATTGGAGTCGAGTAGAACAGAATTGAATGGAATGGCATCGAATGGAATGGAAACGAAAGGAAGGGAATTGAATGGACTCAAATGTTATGGAATCAAAGGGAATGGAGTAAAATAGAATGGA;SVTYPE=DEL;CHR2=Y;END=13863356;SVLEN=-180222	GT	./.	E2110502	contig1	size254	2	cov1.19	375	31	0.548387096774194	0	0	163	13	4.84615384615385	1	53	1058	104	1.48076923076923	2	40	392	62	4.54838709677419	4	54.5	6	0	3	0
Y	13693196	N	.	<DUP>	12	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATGTATTGGAATGGAAACGAATGGAATGGAATGGACTTGAACGGAATAGACTGGAACGTAGTGGACTGGAAAGGAATGGACGGGAATGAAATGGAATCGAATGACGTGGATTGAAATGGAATGGAATCGAAAGGAATGGAATCGAATAGAATGGAATCTAATGGAATGGCAACCAATGGAATGTAATAGAATGGAATGGATACAAATGGAATGGAAACGAATGGATTGGAATCGAATTGAATGTAATTGAGAGGAATGTAATGGAATGTAATGGAATTGAG;SVTYPE=DUP;CHR2=Y;END=13855103;SVLEN=161907	GT	./.	E510670	contig1	size282	2	cov1.07	820	0	0	0	0	948	0	0	0	0	877	82	0.98780487804878	0	0	361	18	1.66666666666667	0	0	3	0	3	0
Y	13720474	N	.	<INV>	2	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CATTCAATTCCTTTCCATTAGATTCCATTCCATTCGATTGCATTCCATTCGAGTCCATTCCTTTCGAGTACATTCCATTCGAATCCATTCCATTGGAGTCCATAGCATTCCATTCCATTACATTAGAGCCCATTCCATTCCATTCCATTCTATTCTGTT;SVTYPE=INV;CHR2=Y;END=58972228;SVLEN=45251753	GT	./.	E432530	contig1	size159	2	cov1.90	5309	112	1.42857142857143	1	29	1821	47	1.36170212765957	0	0	2044	119	12.4957983193277	10	53.5	660	39	10.3333333333333	2	57	3	0	4	0
Y	13721547	N	.	<DUP>	5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGACCGCATCTCCTTCCCTTGAAGACGCTGTTCCGGAATGGAATGGAATGGAAAGGAATGGAATCGAATGGAATGAAACTGAATGCAAGGGAATGGAATGGAATCATCCGGAATGGATTGGAATGGAATGGAATGGAATGGAATGGAATCGAATGGAATCAACCTGAGTGCAGGGGAATGGAATGGAATGATCCGCAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATCGGATGGAATGGGCTGGCGTGGGATGTCATGTCAGGGACAG;SVTYPE=DUP;CHR2=Y;END=13842667;SVLEN=121120	GT	./.	E4289407	contig1	size276	2	cov1.09	7	0	0	0	0	229	2	0	0	0	618690	4939	12.6914355132618	994	40.2665995975855	191855	1486	13.4932705248991	323	40.7987616099071	4	0	4	0
Y	13721590	N	.	<DUP>	5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GGGACCGCATCTCCTTCCCTTGAAGACGCTGTTCCGGAATGGAATGGAATGGAAAGGAATGGAATCGAATGGAATGAAACTGAATGCAAGGGAATGGAATGGAATCATCCGGAATGGATTGGAATGGAATGGAATGGAATGGAATGGAATCGAATGGAATCAACCTGAGTGCAGGGGAATGGAATGGAATGATCCGCAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATCGGATGGAATGGGCTGGCGTGGGATGTCATGTCAGGGACAG;SVTYPE=DUP;CHR2=Y;END=13842667;SVLEN=121077	GT	./.	E4289407	contig1	size276	2	cov1.09	8	0	0	0	0	251	3	0	0	0	618690	4939	12.6914355132618	994	40.2665995975855	191855	1486	13.4932705248991	323	40.7987616099071	4	0	4	0
Y	13721946	N	.	<DUP>	5	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGAGTGGAAGGGAAGGGAAATGAAAGGAATTGAATGGAATGGAATGGACCGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGTATCTACCCGAGTGCAGGGGAATGTAATGGAACGGAATGCAATGGAATGGAATCATCCGGAATGGAACGGAATGGAATGGAATGGAATGGAATCAACCCGAGTGCAATGGAATGGAGTGGAATGGAATGGAATGGAATGGAACAACCCGAATGGAATGGAATGTAATGGAGAGTAAGGGAGATGAATAGAATCAATCCGAATGTAATGGAATGGAAAGGAACGGAAGGGAATTGAAAGGAAAGGAATGGAATGAAATA;SVTYPE=DUP;CHR2=Y;END=13842632;SVLEN=120686	GT	./.	E3958330	contig1	size360	3	cov1.26	20	0	0	0	0	316	2	0	0	0	27133	19286	15.2141968267137	4483	41.5378095025652	8257	5969	14.7704808175574	1330	41.1736842105263	23	1	3	0
Y	13722498	N	.	<DEL>	18.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTCTCGAATGGAATGGAATCGAATGGAATGATATCAAATGGAATTGAATGGAACGGAAAAGATTGGAGTGGTATGGAATGAAATTGACACAACTGAATTGACTGGAATGGAATGGAATGTACTCGAATGAAATGGACTGAATGGAATGGCCTCGAAAGGAATGGAGTCGAATGGAAAGGAATCGAAAGGAATGGAATCCAATGGAATGGAATTACAAGGAATGGAAATGAATGGAATGGAATCAAATGGATGGGAATCGAATGGAATGGAA;SVTYPE=DEL;CHR2=Y;END=13809897;SVLEN=-87399	GT	./.	E689906	contig2	size271	3	cov1.67	8	2	0	0	0	89	0	0	0	0	2596	250	6.412	3	33	870	88	6.82954545454545	1	29	9	0	6	0
Y	13722562	N	.	<DEL>	18.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GTCTCGAATGGAATGGAATCGAATGGAATGATATCAAATGGAATTGAATGGAACGGAAAAGATTGGAGTGGTATGGAATGAAATTGACACAACTGAATTGACTGGAATGGAATGGAATGTACTCGAATGAAATGGACTGAATGGAATGGCCTCGAAAGGAATGGAGTCGAATGGAAAGGAATCGAAAGGAATGGAATCCAATGGAATGGAATTACAAGGAATGGAAATGAATGGAATGGAATCAAATGGATGGGAATCGAATGGAATGGAA;SVTYPE=DEL;CHR2=Y;END=13809897;SVLEN=-87335	GT	./.	E689906	contig2	size271	3	cov1.67	30	0	0	0	0	96	0	0	0	0	2596	250	6.412	3	33	870	88	6.82954545454545	1	29	8	0	6	0
Y	13723587	N	.	<INV>	0	PASS	PRECISE;CT=5to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGCAATAGAATCGAATGGAATGGACTCGATTGGAATGGACTGGAATGGAATGGATTCAAAAGGAATGGAATAAAATGGAATGCAATCGAATGGAATGGAATCGAATGGAATGGAACGGAATGGAATGGAATGAAATGGAATGGAATGATATGGAC;SVTYPE=INV;CHR2=Y;END=58972951;SVLEN=45249365	GT	./.	E1984915	contig2	size155	2	cov1.95	333	24	0	0	0	207	8	5.75	0	0	31181	282	3.37234042553191	8	36.625	13373	114	2.23684210526316	1	29	3	0	3	0
Y	13747899	N	.	<DUP>	10	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CCTTTAAAGTCCATTCTATTCCATTCCATTCATTTCCATTCCATTCGAGTAAAGTCCACTCCAGTCCTTTCCATTCCAGTCCATTCCTCTCCAGTCCATTCCGTTCAATCCATTCCATTCCAGTCCATTCCATTCGAGTCCGTTCCATTCCATTCCATTCCATTGGAGTCAATTCCATTCCGTTCGATGTCTTTCCATATCGCTCCATTCCCTGCTATTCCTTTCGATTCCATTCCATTCTGTTTCATTCCATTCGTTTCCATCCCATTGTA;SVTYPE=DUP;CHR2=Y;END=13859940;SVLEN=112041	GT	./.	E1881669	contig3	size272	2	cov1.11	292	2	7.5	0	0	207	1	0	0	0	124557	270	7	15	39.5333333333333	55459	108	8.64814814814815	13	37.0769230769231	17	1	6	0
Y	13806615	N	.	<INV>	14.5	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CACCTCCATTCCGTGCCATTCCACTCCTCTCCGCTGCACTGCACTCCACTGCCCTCCCTTCCACTCCATCCCATTCCATTCTGCTCCATTCCTCTGCATTCTTCGCGACCCCCCTCATCTCCACTCCATCCCACTCCATTCCATTCCATTCAATTCCATTCCATTACAATTCGTTCCATTCCATTCTTTTCCGTTCGATTCCATTCCATCCCATACCATTCCATTCCTTTCCTTCCCTTTCCGTTCCTTGCCTTTCCATTCGGTTCTCTCCCATTCACTTCGGTT;SVTYPE=INV;CHR2=Y;END=58975913;SVLEN=45169297	GT	./.	E2197631	contig1	size285	2	cov1.06	604	3	0	0	0	216	1	0	0	0	3855	62	28.6451612903226	33	45	1269	32	28.9375	18	43.5	7	0	3	0
Y	13811870	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=AATCGAATGGAATGGAATCGAATGTAATGGAACCAAAAGGAATGGAATGGGATAGAATGGAATGCAATGGAATGGAATGGAGTAGAATCAATTGGAATGGAATGGAATCGAATGGACTGGAATCGAATGGAATGGAATGGAATTGAATGGAATTGATTCGAATGGAATGGACTCAAGAGGAATGGTCTTGAATGGAATTTATTCGAAGAGAATGGAATGAAATTGAATGCAATAGTATGGAATGGAATCGAATGGAATGGACAGGAATGGAATGGAATGGAA;SVTYPE=INV;CHR2=Y;END=58974099;SVLEN=45162228	GT	./.	E2562377	contig1	size282	2	cov1.07	1603	83	2.83132530120482	1	40	592	21	1.0952380952381	0	0	3168	13	0	0	0	1031	5	1	0	0	10	0	22	2
Y	13816660	N	.	<DEL>	4	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=GAAGGGAAGGAAAGGAAAGGAAACCACCCGAATGGAATGTAATGTAATGGAGTGTAAGGGAATTGAATAGAATCAATCCGAATGTAATGGAATGGAATGGAACAGAATGGAATGGAATGGAATCGAATGGAATGGAATGGAATGCAATGGAATGGGATCAACCCGAATGCAGGGGAATGGAATGGAATGGAATGGAATGGAATGGAGATCGGAAGAGCGGCGTGGAGGGAAAGAGTGTAGATCTCGGTGGACGCCGTATCATTAAAAAAGAGGGGAAGGGG;SVTYPE=DEL;CHR2=Y;END=13865744;SVLEN=-49084	GT	./.	E1219686	contig1	size281	2	cov1.07	2143	42	0.571428571428571	0	0	745	6	0	0	0	186	322	2.42546583850932	2	32	86	101	1.21782178217822	0	0	8	0	5	0
Y	13822987	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTGAAGGCAGTGGAGGGGAGGAGAGTGGAAGGGATTAGGAATGGAATGGAATGGGAAGAAAATGAATTGAACAGGGTGGAGTGGAGTAGATAGGAATGGAGTGGAGTAGAATCGAATGGAATGGAATGAAATGGAAAGCAAAGGAACTGAGTCGAGTCAA;SVTYPE=DEL;CHR2=Y;END=28801367;SVLEN=-14978380	GT	./.	E3369566	contig1	size161	3	cov2.81	569	10	0	0	0	195	4	4.75	0	0	613	55	5.4	2	41.5	217	8	12.625	1	41	5	0	6	0
Y	13825956	N	.	<DEL>	23.5	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=TGGAGTGTAGTGGAGTGGAATGGAATGCAGTAGAGTGGAAAGGAATGGAGTGGAGTTGAAAGGATCGGAGTGGAGAGGAGTAGAATTGAGTGGAGTGAAGAGGAGTGGACTGGAGTTTAGTGGCGTGGAGTCGCGTGGAACAGAATGGAACGGAAAGGAATGGAATGGAGTAGAATGGAGAGGAATGGAATGGAATGGAGTTAAATGGAATGGAGTTGAACGGAATGGAGCAGAATGGAATGGAGTGAGGGGGAATGGAATGGAATGTAGTGGAGTGGAATGG;SVTYPE=DEL;CHR2=Y;END=28800257;SVLEN=-14974301	GT	./.	E4173663	contig3	size283	2	cov1.07	1162	48	1.10416666666667	0	0	431	17	4.76470588235294	1	60	12698	151	2.49668874172185	3	40.3333333333333	4138	69	2.28985507246377	0	0	6	0	9	0
Y	13847354	N	.	<DEL>	0	PASS	PRECISE;CT=3to5;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTGGAGTGGAAACGAATGGAATGGAGTGGAATGGAATGGAAAGGAATGAAATGGAATTGATTGGAATGGAATCGAATGAAATGGAGTTGAATGGAATCAAAAGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTA;SVTYPE=DEL;CHR2=Y;END=28800230;SVLEN=-14952876	GT	./.	E3814861	contig1	size199	2	cov1.52	816	27	29.1851851851852	17	41.4117647058824	306	8	28.875	5	43	11626	36	5.30555555555556	2	36.5	3755	21	3.42857142857143	1	44	5	0	5	0
Y	13847395	N	.	<DUP>	0	PASS	PRECISE;CT=5to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTTGGAGTGGAAACGAATGGAATGGAGTGGAATGGAATGGAAAGGAATGAAATGGAATTGATTGGAATGGAATCGAATGAAATGGAGTTGAATGGAATCAAAAGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTA;SVTYPE=DUP;CHR2=Y;END=28800230;SVLEN=14952835	GT	./.	E3814861	contig1	size199	2	cov1.52	526	8	0.25	0	0	193	3	0.666666666666667	0	0	11626	36	5.30555555555556	2	36.5	3755	21	3.42857142857143	1	44	5	0	5	0
Y	13858372	N	.	<INV>	0	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=ATTCCATTCCATTGGATTCCATTCCATTCTATTTCATTCCTTTGGATTCCATTCCAATGGAGCCCACTACATTCGAGTCCTTTCCAATCCATTCTATTCCTTCCCATTCCATTCCATTTCATTCCATTCGGTTATATTACATAACATTGAAAGCCATTCCATTCAAATACATTCCATTACAATCAACTGCATTCCAGCCCATTACATTCAAGTCCATTCCTTTCCATTCCATTCCAATCCATTTTATTCCATTCGAGTCCGTTCCATTCGAGTCCATTGAATTCCAGCCCATA;SVTYPE=INV;CHR2=Y;END=58912919;SVLEN=45054546	GT	./.	E1338971	contig1	size293	10	cov5.15	1150	193	2.82901554404145	4	49	449	70	3.95714285714286	4	36.75	1841	217	1.75115207373272	4	41.25	1659	58	2.3448275862069	1	40	7	0	6	0
Y	13861275	N	.	<TRA>	23	PASS	PRECISE;CT=3to3;CIPOS=-10,10;CIEND=-10,10;SOMATIC;CONSENSUS=CAATGGAATGGAATGGGATGGAATGGAATGGCATGGAATGGCTAAACGAAATGTGAGTTAAGATTGTACCACTGGACTCCAGTCTGGGTGACATTGTGAGATCCAGTCGAAATAAAGGAATGGAAAAGAGTAGAAAGGAATAGAATAGAGGGGAGAGGAAGGGA;SVTYPE=TRA;CHR2=5;END=56426678;SVLEN=0	GT	./.	E1187630	contig2	size164	2	cov1.84	1260	119	1.66386554621849	0	0	492	36	0.75	0	0	140	4	3.5	0	0	55	0	0	0	0	4	0	15	1
