237b6518a5d69899745712d18be7568a7a7d90c5252cb0b90bfa7132fe0917e1 977 CITATION
2d212fbfa2cba0a8c39f15133ddee80ea17846e1c1a784332b54cbc56e143840 2521 DESCRIPTION
9321a2e7e78294d5b68ec6f9a5c5984a2209721a0d02209913905dd90ce886d3 2854 INDEX
eaa59594a7f829b5c7b48c7af729efd1dda18c27fbebcc3346ce591f8c5fee8a 3207 Meta/Rd.rds
b4f074bc0f45cfe56d976c0d67a1453067f4b34693828ed02d674a6641b3e332 123 Meta/features.rds
c673de72a4ee8e3a59b191512ccf7adfd84f7ec4e8c5c133c08c949b72a30a7b 2840 Meta/hsearch.rds
29748e124e73372e2f1c10fe9e3d95b9a41f106184f310780d6b43192619ecc8 1311 Meta/links.rds
5708e90f6aa9b3db71769772b905995db6ba28e7739feb76bb1cb5bfe4674c34 876 Meta/nsInfo.rds
8b4b488df297ebb948dd002ac18e88fdb8d3a3f9da8b1491fc95706b61ec3f92 2095 Meta/package.rds
1330758c634b49b97da4dd00291d34b2dda4e3fe2144949a61484f37bc15ebe3 487 Meta/vignette.rds
67b92293fbd9dd5764e8da03ec28c47c4343d5bf0b902064eb8d5c56ab09ef3b 1982 NAMESPACE
8f1344ebeabbe5085ed0a26f8cea6057d181c7f9888dabc809a0b85f6cb0237e 1175 NEWS
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/amplican
62aeffcd672aa6c74443aa9b4419761f54734a424a6fc1ac527bf4001954444a 532337 R/amplican.rdb
49d887f54c33bb7fb4a98220be454a56e10eecd991ded0b5029d1b3ef267a783 3310 R/amplican.rdx
2163f09979639ef77bd6381ef94e3fb8d4815c171ac91bf7443921da33a8d8bc 2233 README.md
6494dff3d1589b8a8ce39f6774c45e838f71edeb87ac538b43f4b5d309ef374e 415 TODO
107eb6efe0598c9d0a0b55e234e9475496217ae1ce01c0ef526ffc74181bd38e 50261 amplican-figures/alignment_deletion.svg
493b56d8592643b52783e739da918b58e31ca7625283a7a74ebd93f3698ad8cc 50072 amplican-figures/alignment_match.svg
ea2358fd5877a4b4d8a25f33b4fe12aa3d5ac94320b1014b6496fb755c760d19 57376 amplican-figures/amplicanNormalize.svg
746ec557f98d7d830c0b59d5d2afef9b551b3695bcb42aeaa237ae7bd152d2bf 683973 amplican-figures/event_level_resolution.svg
cf4d9935a6defd0acd3e938235a66dfdaa929e10f4d3b3139936bcdc556183de 4740 amplican-figures/generate.R
e868d0ebcfb195fb2fbacf9e980b66ce9b28a8c1fc33c7e73d9ea43d449dcb6c 7177 amplican_animation.html
e7148b0fe04039e6b0bab2360b92ccb479ef30380c09607eb147492c3c8bc5b6 53155 amplican_animation.js
560653570df6b9f4b1327bb746c9cbfbcb5a26061e884b1e28a0e8d255fe4e39 4276 doc/amplicanFAQ.Rmd
d17a283c0a78a8100f133ea7d2895800b4cfeca82517087be60758f3503b632c 8732 doc/amplicanFAQ.html
88acd0aa84d179e11efacb54e2b5f3fd712e57eb52e4c1d842f2092bfcdaac11 6995 doc/amplicanOutputTweaking.R
969ff91350b0c7b31e08b97d0723cfa18f610caff0c253a8826c9ec8ad66f5e5 24173 doc/amplicanOutputTweaking.Rmd
bc78d5b92e95552ab0a21ee10aebe27905c72c0a474abaa3f766c0f220a57bff 53700 doc/amplicanOutputTweaking.html
a3dd1e7d246b282028aafe4d6d50c4e0822639337372c03919632a351af55577 2807 doc/amplicanOverview.R
d25b461eb1a62ddf2447b63120436f344d0a8705e53a0bcaccfbc0e95baaa078 15944 doc/amplicanOverview.Rmd
31116fcc725cebbafcedb532686f0fff485aab92e175b08dba9690d201fd6c2f 430694 doc/amplicanOverview.html
fd3f0c099de9f953ad72f90e25745be7416994faca95b976176bd8cba0fbb97c 55568 doc/codeExplained.Rmd
5c5b472f492d6e2a99ab0c271e07bb6b8fd957021a645f7d7eee69b5e583f4fc 75782 doc/codeExplained.html
a112f293e3370c9ecacdf1ab16e84b84f2623193f032d4e6922350a744b3e7d8 7607 doc/configPreparationWithAI.R
b92a91f88f93020da36c0b1c7c34bc8e14d1f44232a0463319ec84ae97ed2ade 24629 doc/configPreparationWithAI.Rmd
693241be1278a4c85aee2e98cf7d58f0b3e9b01fd4cc07bc5908191849b72b9a 56382 doc/configPreparationWithAI.html
c34bb58390bfd2ba8127d77ad47c32d2a6b26fa78cb85b1ee8d7415c9325529c 10063 doc/example_amplicon_report.R
a690205cbc3cd49a2df812d957d77dac854d35dcebf1c652a0d21afcee92b8a4 18683 doc/example_amplicon_report.Rmd
5a57a9cc153e5179e3c2630c89bd0bd621a95becd51de5431e793268f7ec5e43 2261874 doc/example_amplicon_report.html
09f8293cc15ec446102c1472fdda5a61de020f859d1bd8c0777563c59f2616f2 5889 doc/example_barcode_report.R
1a236f34f655cdbe9dfa80be3f209e4083d4c26f1092eb949479aaeb60b41724 17324 doc/example_barcode_report.Rmd
928cda074cfb21fdb1f620af086ddd4068fb296f6b8440f0c8a346bd0e72d1c1 208979 doc/example_barcode_report.html
8a5246625fd10627500d137a987964a55b4c326756f261c019193a74a41464d8 4760 doc/example_group_report.R
cf4c6deadc4f4f08bde191463225bb812c9a872c6f6e1e4111945778f395d8ef 15111 doc/example_group_report.Rmd
c83959ab0c245f08d8d1a04be131b32d69ac792ec219fe876dd527d2751792a3 506735 doc/example_group_report.html
8124ec7d53664d9af8bd0903f313f540e5f4e05ff4e6836819e133b952c800a9 5492 doc/example_guide_report.R
f3fe0546b7f50d9060dcac5bced79c15d21aa5fa2484fc57fc28cda9b812ef97 15151 doc/example_guide_report.Rmd
4e983fff865fd588f2c3921736ab4cee02e83b299f0733d3c7a851afa288a73e 620307 doc/example_guide_report.html
91c4df43afab28663e8de8168bb73aee6cc451f55db28ea4251253af79dc8ee1 8741 doc/example_id_report.R
ad2e63928960bd19f54f849b643dea96d6b346e973f540a41282bd4c9318d420 17127 doc/example_id_report.Rmd
b812fd4fd44c3063ca0aaf6ed90e349450f86b0f84f5f17d9127bf0aed0ebdd2 1820781 doc/example_id_report.html
646ef8741570a5e7325bf83bffcaf9282527ea12dce8579ed90de9b15fd2f4b9 9595 doc/example_index.R
2d5457ffd4648745cc9476e9e9d20295a8e10ad8a49d1309ee39a01f63ea5042 20785 doc/example_index.Rmd
16e7bb7712b5e46fed9c07b6c1a4da2968310e7a493cdc0175acfaac9dc9746c 443641 doc/example_index.html
29abdc025e6a8dd0e46a2a9ad191b23ff64a3b8a47c5c2bc3046ce6aa493f2b7 6028 doc/index.html
1516318c71275c41b9ff6b590e7ae93c097f04c484256f752707867986f6ee5c 6819 extdata/R1_001.fastq
0367fe186579bf769974f0b6f3048d69095025697c58b12e47f7283f9f0f7f80 7816 extdata/R1_002.fastq
7e13fa0dcff2b812e5d29e8898ce5d1830bf6b78b8646054f742a8af101755a6 6819 extdata/R2_001.fastq
1e010f06de933904d662c6412f41fe5a8db6f09da9d1130b733a4caa73504e65 7984 extdata/R2_002.fastq
327b846db324d347584cebd932eca5e2de85dbafd48a308960ded7a8e35177ba 1888 extdata/config.csv
e77dacc6f2d4dcf92c4673e6949a04d090fe149d83ce9adb47605b16db7efa6b 399598 extdata/findLQR/01_high_edit_falsepos/events.csv
1fc6c8ab9417404fd77e9a0eafcab679f8ad87bc23fed928b447cdb81263c251 181204 extdata/findLQR/06_genuine_junk/events.csv
8ca85d3632accd0a1021f02966fe8da7818a7a1dd4f6b17a931d9e3bef9ebdbb 408417 extdata/findLQR/07_large_del_high_edit/events.csv
fc3ffdc40a6ed7c50dfbc2e060986fc4171451d3823cea63005ee2f37dd0b81b 1380 extdata/results/RunParameters.txt
87656335dc364c7adc5e6fe1ed65335bce6549d190b3ac05004af96a7d80ffbd 4826 extdata/results/alignments/events_filtered_shifted.csv
87656335dc364c7adc5e6fe1ed65335bce6549d190b3ac05004af96a7d80ffbd 4826 extdata/results/alignments/events_filtered_shifted_normalized.csv
a68d097c22d4ccf1a6b1e424b1b8361a20841737b34ef1c649c7865f711f50e2 941 extdata/results/alignments/experiment_data.rds
606dad9c6202b471a9e2faaf32a905e6dda5246c602df3df90ba41525d7cf0e8 4455 extdata/results/alignments/raw_events.csv
c0c6c58c9c98007460da3d7e3a982bfc5fd08b363a431cb8e111d97801fa9525 2776 extdata/results/alignments/temp/barcode_1_aln.rds
f979ffe5b77cd741db6d5b2ef6a290fb6cb8b580c2dd0ffea967f1642848273e 1778 extdata/results/alignments/temp/barcode_1_events.csv
e8ee690954b8bc6e5fb9f2555e684e03b414903621db40a0a2750210c6437ed7 2835 extdata/results/alignments/temp/barcode_2_aln.rds
183d24165631415b1ede291ed288178f44a7a6b325a6e5056857991eaa28d93a 2767 extdata/results/alignments/temp/barcode_2_events.csv
a1bc5fef165d35fa43ad00378e0309cae84cfc7e7fcefb6cfcbb3d33d7f4adba 1533 extdata/results/alignments/unassigned_reads.csv
972719439f9c64d2aa50dcbc9c7dba0d0404069ce250fb988fc7fd292045253e 212 extdata/results/barcode_reads_filters.csv
4c12eb9464aa34eb9a13b5a73fdee605a878703c4eeed0d0f573336f89e3bd3e 2617 extdata/results/config_summary.csv
6db3ab917ad73e26cd4fd9508e8175ddc57260b7265109c38e4fdfe52337b8ca 4197 help/AnIndex
2785f2b81885e0c3a1648f12727940d9b28d26c7c8388e59e12ffe0451dfc8a1 978 help/aliases.rds
575fd5d27a83531f049aa3b0e4a7d318f0f63b827f71ee139b228588093e18e3 192289 help/amplican.rdb
2bc3e7dd4bd06a9a79f85219587e4ad12dd74e1205eb9d6291609b65f3bb5970 1811 help/amplican.rdx
22be996278034d90f8ae0d8eb444c6339977d0b589b8394ce6b03885e922aea1 844 help/paths.rds
f50aa6941ddc0f4453c428b68e4a36921704f055959c30962f9cdbd11c4cc544 6246 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
9ed9d41182fbbe1f89a58dab15da9e32953ba5730c97f38679fbb13360e91bfb 112200 libs/amplican.so
6aaa860bdafdeb382887fddb4a3ebefb377f0425979b99a52fb9ca06e835f851 5058 libs/symbols.rds
7eada85a67763df0af6d3ddbd659e16ef518f084ddeb985c02ea051d93de8018 18551 rmarkdown/templates/amplicon_report/skeleton/skeleton.Rmd
dcb02ba48ba3ff04f7852470d1d5dc8c81146cf6121c611c626f651fbffd9ea0 121 rmarkdown/templates/amplicon_report/template.yaml
e2a8a52a880caa8c67d4191b2ed460a58ada727a302487183256d4648b49417c 17193 rmarkdown/templates/barcode_report/skeleton/skeleton.Rmd
dcb1811b0d5ae893639dd561b9456265362097527bc7e803712d5346fdeb1363 110 rmarkdown/templates/barcode_report/template.yaml
196d8169568f6609465a6f5a3cbd70549f88a035c3bc688c174d8dc9a488d787 14982 rmarkdown/templates/group_report/skeleton/skeleton.Rmd
7767acafa00e5e0747159799e5d9ec03d71ea8eecc2fe831b0d4170f7106065f 137 rmarkdown/templates/group_report/template.yaml
41f7a673d1b1058652b578507c0548cc9184fc9c9603dfc18d30e42badf9dbd6 15022 rmarkdown/templates/guide_report/skeleton/skeleton.Rmd
8971a04e0c5e96086b9599b7f700e0dbac1de2e265f47f1d2f7da8d5fd32f8ec 118 rmarkdown/templates/guide_report/template.yaml
fc0b84863b38efd4a1a8c53d87e11710329bc0117b52a52a26ec5cb39d97b95e 17001 rmarkdown/templates/id_report/skeleton/skeleton.Rmd
2be240f4c11832aa52db8f603fa5ed8a2160795279cc9267f8abb36d1492d8c9 167 rmarkdown/templates/id_report/template.yaml
45f1f41e00c4fe9604b308984097553ce060e49c83e8735b581de973095f483c 20404 rmarkdown/templates/index_report/skeleton/skeleton.Rmd
af4d21e24f3ab735518d043b2afa1f54be10ac97c24788f956abb8d0e0b981bd 139 rmarkdown/templates/index_report/template.yaml
af1cc58383709fb82186012a3b9f31f080a009b995e4df753ea101406a940d0d 4172 test_data/test_aln.csv
85666dc677e6adba488748a854394ca74d63b511e4ad0cb93ad596d025ae5301 473 test_data/test_cfg.csv
