R: Improved ChromVAR (Chromatin Variation Across Regions)

# Improved ChromVAR (Chromatin Variation Across Regions)

## Documentation for package ‘betterChromVAR’ version 1.1.8

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

addGCBias | addGCBias
as.list-method | Coerce bcvBackground to a list
bcvBackground-class | Bin and background data for betterChromVAR (for internal use)
betterChromVAR | betterChromVAR
computeBackgrounds | computeBackgrounds
computeDeviationsAnalytic | computeDeviationsAnalytic
computeDeviationsFromKNN | computeDeviationsFromKNNbg
computeDeviationsWeighted | computeDeviationsWeighted
computeMotifVariability | computeMotifVariability
CVnorm | CVnorm: chromVAR-inspired ATAC-seq normalization
getBackgroundBins | getBackgroundBins
getBackgroundKNN | getBackgroundKNN
getDummyData | Dummy data for testing purposes
getExpectation | getExpectation
normalizeDevsForSize | normalizeDevsForSize
sampleBackgroundPeaks | sampleBackgroundPeaks
show-method | Coerce bcvBackground to a list
shrinkColumnProps | shrinkColumnProps
[-method | Coerce bcvBackground to a list