alignCoor               Aligns two sets of genomic with x,y,z
autoK                   Automate Cluster Number Selection
availableGeometries     Available Geometries
cellClusters            cluster single cell 3D structures
create3dGenomicSignals
                        create 3d Geometry by given genomic signals
createTADGeometries     create 3d Geometry by given TADs
extractBackbonePositions
                        Extract the backbone coordinates from output of
                        mdsPlot
fill_NA                 fill NA values by upstream and downstream
                        points
gaussianBlur            Gaussian blur
geomeTriD-package       Interactive 3D plot of epigenetic data or
                        single cell data
loopBouquetPlot         plot GInteractions
mdsPlot                 Plot genomic interactions by multi-dimensional
                        scaling plot
pointCluster            Perform DBSCAN clustering
rglViewer               rgl Viewer View the 3d structure by rgl.
SDC                     Distance to centroid
smooth3dPoints          Calculate the smoothed curve for input GRanges
spatialDistanceMatrix   Create the spatial distance matrix
SRD                     Sequence Relabeling Distance
threeJsGeometry-class   Class '"threeJsGeometry"'
threeJsViewer           threeJs Viewer The htmlwidgets viewer for
                        threeJs.
threeJsViewer-shiny     Shiny bindings for threeJsViewer
view3dCells             Plot cell xyz data in 2d or 3d
view3dStructure         Plot GRanges xyz data in 2d or 3d
