AllAccessors            '"rCGH"' Accessor Functions
EMnormalize             Genomic Profile Centralization
adjustSignal            Array-based CGH Preprocessing
agilentDB               aCGH Agilent Probes GC Fraction
byGeneTable             Converting a Segmentation Table Into a By-Gene
                        Table
hg18                    Hg18 Chromosome Lengths and Centromere
                        Locations
hg19                    Hg19 Chromosome Lengths and Centromere
                        Locations
hg38                    Hg38 Chromosome Lengths and Centromere
                        Locations
multiplot               Static Genomic Profile and LOH Visualization
plotDensity             Visualizing the Log2Ratios Density and
                        Centralization Decision
plotLOH                 Allelic Differences Visualization
plotProfile             Static Genomic Profile Visualization
rCGH-Agilent-class      Class '"rCGH-Agilent"'
rCGH-SNP6-class         Class '"rCGH-SNP6"'
rCGH-class              Class '"rCGH"'
rCGH-cytoScan-class     Class '"rCGH-cytoScan"'
rCGH-generic-class      Class '"rCGH-generic"'
rCGH-oncoScan-class     Class '"rCGH-oncoScan"'
rCGH-package            Comprehensive Pipeline for Analyzing and
                        Visualizing Array-Based CGH Data
readAffyCytoScan        Affymetrix CytoScanHD '"rCGH-cytoScan"'
                        Constructor
readAffyOncoScan        Affymetrix OncoScan '"rCGH-oncoScan"'
                        Constructor
readAffySNP6            Affymetrix SNP6 '"rCGH-SNP6"' Constructor
readAgilent             Agilent Dual-Color Hybridization
                        '"rCGH-Agilent"' Constructor.
readGeneric             Generic rCGH object '"rCGH-generic"'
                        Constructor
recenter<--methods      Recentering a Genomic Profile
segmentCGH              Genomic Profile Segmentation
setInfo<--methods       Adding Information In An Object Of Class
                        '"rCGH"'
show-methods            'show' '"rCGH"'
view                    Interactive Genomic Profile Visualization
