Package: zFPKM
Title: A suite of functions to facilitate zFPKM transformations
Version: 1.35.0
Authors@R: c( person("Ron", "Ammar", role = c("aut", "cre"), email =
        "ron.ammar@bms.com"), person("John", "Thompson", role = "aut",
        email = "john.thompson@bms.com") )
Description: Perform the zFPKM transform on RNA-seq FPKM data. This
        algorithm is based on the publication by Hart et al., 2013
        (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to
        select expressed genes. Validated with encode open/closed
        chromosome data. Works well for gene level data using FPKM or
        TPM. Does not appear to calibrate well for transcript level
        data.
License: GPL-3 | file LICENSE
URL: https://github.com/ronammar/zFPKM/
BugReports: https://github.com/ronammar/zFPKM/issues
Imports: checkmate, dplyr, ggplot2, tidyr, SummarizedExperiment
Suggests: knitr, limma, edgeR, GEOquery, stringr, printr, rmarkdown
VignetteBuilder: knitr
biocViews: ImmunoOncology, RNASeq, FeatureExtraction, Software,
        GeneExpression
Depends: R (>= 3.4.0)
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/zFPKM
git_branch: devel
git_last_commit: 237460f
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.24
Date/Publication: 2026-05-18
NeedsCompilation: no
Packaged: 2026-05-18 23:50:42 UTC; biocbuild
Author: Ron Ammar [aut, cre],
  John Thompson [aut]
Maintainer: Ron Ammar <ron.ammar@bms.com>
Built: R 4.6.0; ; 2026-05-19 05:14:09 UTC; unix
