Knowledge-Guided Multi-Omic Correlation Network Analysis

Documentation for package ‘CorNetto’ version 0.99.1

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calculateRewiringScores	Calculate Node Rewiring Scores
combineKnowledgeNetworks	Combine Multiple Knowledge Networks
combineNetworks	Combine Network Edge Tables
correlationResults	Get Stored CorNetto Results
createAnalysisData	Create a CorNetto Analysis Object
createCorrelationNetwork	Create a Group-Specific Correlation Network
createDifferentialCorrelationNetwork	Create a Weighted Differential Correlation Network
createFocusedNetwork	Create a Focused Network Around Seed Nodes
createNetworkGraph	Create an igraph Object from a CorNetto Edge Table
differentialCorrelationNetworks	Get Stored CorNetto Results
differentialCorrelationResults	Get Stored CorNetto Results
exampleAnalysisData	Load the Synthetic Example Analysis Data
exampleKnowledgeNetwork	Load the Synthetic Example Knowledge Network
exampleSeedNodes	Load the Synthetic Example Seed Nodes
filterFeatures	Filter Features Before Network Construction
filterNetworkByNodes	Filter a Network by Node Membership
filterSamples	Filter Samples Before Network Construction
getCorNettoResult	Get Stored CorNetto Results
integratedNetworks	Get Stored CorNetto Results
knowledgeNetworks	Get Stored CorNetto Results
permuteRewiringScores	Permute Rewiring Scores
plotRewiringScores	Plot Rewiring Scores
prepareCytoscapeTables	Prepare Cytoscape Node and Edge Tables
readKnowledgeNetwork	Read a Knowledge Network from Disk
rewiringResults	Get Stored CorNetto Results
summarizeAnalysisData	Summarize a CorNetto Analysis Object
summarizeKnowledgeNetwork	Summarize a Knowledge Network
testDifferentialCorrelation	Test Differential Correlation Between Two Groups
validateAnalysisData	Validate a CorNetto Analysis Object
validateKnowledgeNetwork	Validate a Knowledge Network
validationResults	Get Stored CorNetto Results
writeNetworkTables	Write Cytoscape-Ready Network Tables