Package: GSABenchmark
Type: Package
Title: Tools for benchmarking single-cell gene set analysis methods
Version: 1.1.2
Authors@R: person('Andrei-Florian', 'Stoica', 
    email='andreistoica@foxmail.com',
    role=c('aut','cre'),
    comment=c(ORCID='0000-0002-5253-0826'))
Description: GSABenchmark is a package designed for benchmarking
        scRNA-seq gene set analysis (scGSA) methods. It provides both
        traditional and novel benchmark metrics, as well as
        visualization tools. Currently, GSABenchmark supports 17 scGSA
        methods (AddModuleScore, AUCell, CSOA, GSVA, JASMINE, MDT, MLM,
        ORA, Pagoda2, PLAGE, Singscore, SiPSiC, ssGSEA, UCell, UDT,
        VAM, and Zscore).
License: MIT + file LICENSE
Imports: abdiv, CSOA, decoupleR, dplyr, escape, fabR, ggplot2, ggrepel,
        GSVA, hammers, henna, jaccard, lsa, Matrix, MLmetrics, methods,
        mltools, pagoda2, paletteer, reshape2, rlang, scLang,
        singscore, SiPSiC, stringr, stats, VAM, withr
Encoding: UTF-8
RoxygenNote: 7.3.3
Suggests: AUCell, BiocStyle, knitr, qs2, ranger, rmarkdown, rpart,
        scater, scRNAseq, scuttle, Seurat, testthat (>= 3.0.0), UCell
biocViews: Software, SingleCell, GeneSetEnrichment, GeneExpression,
        Visualization
VignetteBuilder: knitr
URL: https://github.com/andrei-stoica26/GSABenchmark
BugReports: https://github.com/andrei-stoica26/GSABenchmark/issues
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev git
        libglpk-dev make libmagick++-dev gsfonts libgit2-dev libicu-dev
        libpng-dev libuv1-dev libxml2-dev libssl-dev python3 libx11-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-26 04:32:06 UTC
RemoteUrl: https://github.com/bioc/GSABenchmark
RemoteRef: HEAD
RemoteSha: 2e7d1881054aa925a96a28c0a95be62f864385e7
NeedsCompilation: no
Packaged: 2026-07-27 11:18:39 UTC; root
Author: Andrei-Florian Stoica [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5253-0826>)
Maintainer: Andrei-Florian Stoica <andreistoica@foxmail.com>
Built: R 4.6.1; ; 2026-07-27 11:31:50 UTC; windows
