bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
4ca64041f4b5dffe0ca2e08475748ac2 *DESCRIPTION
d7bef1091553b8d404d3cabd025ccbfc *INDEX
7b84a2b9de8720e8d38f017f1da62abf *Meta/Rd.rds
8bd78fe4d71c3aeb1a0f4982ee51622b *Meta/features.rds
d48f073075c016b8f5778ddc5993172a *Meta/hsearch.rds
dc7fb555cd9f6329425cce9e1c24d224 *Meta/links.rds
8e91d1cdffd58b729e8f770869dcd077 *Meta/nsInfo.rds
780bf61742bec459ef44deade971e5bf *Meta/package.rds
424ba573338e5f33e6206581cfd9fb34 *Meta/vignette.rds
4ad7f0e4df2159db6ba8fb3c02baf138 *NAMESPACE
f2c08c8ade0696178a08ec220e322f0e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenomicAlignments
327039e084208256340829f5462fbc66 *R/GenomicAlignments.rdb
d5a826ce4c4b3eb379fa647c6a57983c *R/GenomicAlignments.rdx
779e0034c6f577700614026cd90a618a *README.md
244300f607fd313bc0f1e12aac6fa8d3 *doc/GenomicAlignmentsIntroduction.R
6e39e7a38e67414501fb32634a4052aa *doc/GenomicAlignmentsIntroduction.Rnw
0c019d9ad93d535488e6dc969490eb6a *doc/GenomicAlignmentsIntroduction.pdf
a6b943caa621dee3fe79c33c204ca6f6 *doc/OverlapEncodings.R
5d1bb13de397b6d2d60596aaea64ab07 *doc/OverlapEncodings.Rnw
def7aaa1aef4316971a60c70883f2dc5 *doc/OverlapEncodings.pdf
abdff216625c75cdcde9af17016349cf *doc/WorkingWithAlignedNucleotides.R
10c400e5d2948a1b5202e3c387c97990 *doc/WorkingWithAlignedNucleotides.Rmd
474fa35e3de93d30578e2dbb04c7f177 *doc/WorkingWithAlignedNucleotides.html
5d0c08f747978c6d65754da534909dd8 *doc/index.html
111d660eb9166747c920a9df9295bfa7 *doc/summarizeOverlaps.R
8d6114b1245e4f25b7db01f3ff3111f5 *doc/summarizeOverlaps.Rnw
e565a6dfd6f97a8c69e6414ae6c14e63 *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
9c261a63f351043912c92d9c20039333 *help/AnIndex
5a84ebd03ab5c527ba96aad5c3cac2f4 *help/GenomicAlignments.rdb
2d7b1529674e98292a7150eb1f2a10bb *help/GenomicAlignments.rdx
21639cfa6bdb1734cbe9c73e4e4b974a *help/aliases.rds
44af30c6bcfd10b72f650261d87b6fb0 *help/paths.rds
e4cc54d46b748d9390140e6619e98f68 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
4b871d08f86c98e992f90379d9b8f9f7 *libs/x64/GenomicAlignments.dll
4ef9f3de05e3a027b4fcdfedf7016487 *libs/x64/symbols.rds
a7b36b6b3e11006f2eb35e0c74d36328 *unitTests/test_GAlignments-class.R
154347216f4ba7be01f4202c3981634e *unitTests/test_GAlignmentsList-class.R
4bcd8177a9a9003a0c3a606a332682f5 *unitTests/test_coordinate-mapping-methods.R
6423ceb23b9aa2509a64f02c53ff9f57 *unitTests/test_findSpliceOverlaps-methods.R
50ce35ec47c6be35b91c2cc63b9fdbaa *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
d6c4737a308c9831ecaff1d0bbd842d5 *unitTests/test_readGAlignments.R
9610e31d42cdcec687fb5f4fb264b906 *unitTests/test_readGAlignmentsList.R
2fb44c497e34c02755ad2e06313ef014 *unitTests/test_summarizeOverlaps-methods.R
