ece5aa136bbe070b522d7a81b4e1fcb9 *CITATION
3237bf7cd036213c81f281507e9d210c *DESCRIPTION
8b7aed4bb71ead6d6c53f04f1b241082 *INDEX
508a12ffac3697e82f39755d29c30dbf *Meta/Rd.rds
8bd78fe4d71c3aeb1a0f4982ee51622b *Meta/features.rds
24f9c279c99efe9a674305e79f153a84 *Meta/hsearch.rds
b66ab4a21010a54d7b449325d4af4b19 *Meta/links.rds
b38fbccf6517e8a99523d416bdefd365 *Meta/nsInfo.rds
e8d6358030c51dbe08aedf58e178f383 *Meta/package.rds
7853c6a7e3b8ce78c90fe9b72ec8fc31 *Meta/vignette.rds
6a89a776f28dad05d3b8c2f027a01430 *NAMESPACE
4ea5155b42b66053d13ce21840ed04d5 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/LACHESIS
17c9a31265d209964f827c9d2fc6df82 *R/LACHESIS.rdb
4231cf1083dbf3dbb23066e99c21053c *R/LACHESIS.rdx
d19bce3983caa79757eddae019980093 *README.md
be0c3cd3b5946279b93543e74b82ba67 *doc/index.html
4b78fb793f25efd33163426b97a4e1e3 *doc/vignette_LACHESIS.R
199e1fafa9b994c741282fd0563b4164 *doc/vignette_LACHESIS.Rmd
c1f9da0bd8d19b9d8e0e04d9864e31dd *doc/vignette_LACHESIS.html
94d2629d85dd4ad90b5186bc2a9f8f04 *extdata/ACESeq/NBE11_comb_pro_extra2.59_0.83.txt
8b994519d2411f18b60adfd26acbf89b *extdata/ASCAT/S98.segments.txt
5f4b5ba42cd2d60c38e75180bf2afedc *extdata/LACHESIS_package_structure.png
94d2629d85dd4ad90b5186bc2a9f8f04 *extdata/NBE11/NBE11_comb_pro_extra2.59_0.83.txt
f2c857419ed7f5dbbffb0d8bf49a3e66 *extdata/NBE11/snvs_NBE11_somatic_snvs_conf_8_to_10.vcf
3fb79b6ea7c72d99a6f70a740c21897a *extdata/NBE15/NBE15_comb_pro_extra2.51_1.txt
cab67f45f44823a375a6dc56fcc6ee09 *extdata/NBE15/snvs_NBE15_somatic_snvs_conf_8_to_10.vcf
8c2861c8ba5fd9684ab865ff57b1a98c *extdata/NBE15_Decomposed_MutationType_Probabilities.txt
797d549a3dbe3e849b6368f107642cd6 *extdata/NBE26/NBE26_comb_pro_extra3.25_0.88.txt
c2404a7f1d0318ca172913d1e81038a0 *extdata/NBE26/snvs_NBE26_somatic_snvs_conf_8_to_10.vcf
c512c56d132731f632c2eb60b9b77315 *extdata/NBE63/NBE63_comb_pro_extra2.3_0.97.txt
a0cbbc83811d5f2f7f5fa3d605c9160f *extdata/NBE63/snvs_NBE63_somatic_snvs_conf_8_to_10.vcf
cbe3b7e8f5b22a068a48b262a0b57b19 *extdata/PURPLE/NB-S-599-T.purple.cnv.somatic.tsv
f4e1e6bf35e79c2e8526ff6ab3e8285d *extdata/Sample_template.txt
e458dac4d633e7813bf0dc172e2d9c6a *extdata/Sample_template.xlsx
1f9e529df8c9acdffd07bddf25f58c11 *extdata/VAF_negative_example.png
8a03b871ab43dd81ac75e324e83be133 *extdata/VAF_positive_example.png
f297b6b0a60ba50cff8b7b29e8822a8c *extdata/cancerhotspots_v2_GRCh37_adapted.tsv
d27d41ecfcf573d40f07f0bc3578ccff *extdata/cancerhotspots_v2_GRCh38_adapted.tsv
ea81f3887d05ae2971a537a5705968e7 *extdata/mutect.somatic.vcf.gz
a099dd5544af73fcac562e530cfa78d0 *extdata/mutect.somatic.vcf.gz.csi
12829bd76d98be37c3a2843c89c2b2f8 *extdata/other.vcf
0176ae877742f09b2780db5bdba5134d *extdata/strelka2.somatic.snvs.vcf.gz
f3936b51b11414d93b113331d4893ed5 *extdata/strelka2.somatic.snvs.vcf.gz.csi
5a8c1f00bac0e3055c168f80e3e73950 *help/AnIndex
2e805172affa7ea40010d4cf3211c50f *help/LACHESIS.rdb
1d226d488ae99871b90924c41151fbcc *help/LACHESIS.rdx
4e3b536fc9dd01215f9d3c30767131fb *help/aliases.rds
a83ab9d604d3715d18a513d9fb4cbd97 *help/figures/LACHESIS_logo.svg
d28b37351cdcf1aae1704b52eb6d4e1f *help/paths.rds
6e3b5e6276b8f9b65a5577f1f09b6f84 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
2f8f961f8ad62b115ba13dd38c8d198a *intdata/hg19.sizes
83fb1c17d81cedfa9d5bbd663a09b4e2 *intdata/mm10.sizes
645e86ccf2d7dabf731c1b3ec1552b7a *tinytest/test_nbImport.R
1a431e20711554b480050e1b9de3951c *tinytest/test_readCNV.R
2aba5ee4ea9e82469415a25c55803e2a *tinytest/test_readVCF.R
