Package: PostChicago
Type: Package
Title: PostChicago - visualization and integration of Capture-(Hi)C
        data
Version: 0.99.5
Authors@R: c(
    person(
      "Angelika", "Feldmann",
      email = "angelika.feldmann@dkfz-heidelberg.de",
      role = c("aut", "cre"),
      comment = c(ORCID="0000-0001-7094-8081")
    ),
	person(
      "Samuel", "Krall",
      email = "sammikrall@gmail.com",
      role = c("aut")
    ),
	person(
      "Belinda", "Blum",
      email = "belinda.blum@dkfz.de",
      role = c("aut")
    )
  )
Description: PostChicago is a toolbox for visualizing and assessing the
        output from the CHiCAGO pipeline. The plots created by
        PostChicago show reads or CHiCAGO scores over different
        regions. PostChicago can integrate different experiments with
        other types of datasets and compare separate conditions.
        Detailed description can be found in Krall et al. (2026)
        <doi:10.64898/2026.10.08.757510>.
biocViews: Software, GeneRegulation, Epigenetics, Visualization
License: Artistic-2.0
URL: https://github.com/FeldmannLabDKFZ/PostChicago
Encoding: UTF-8
RoxygenNote: 7.3.3
Imports: GenomicRanges, pheatmap, S4Vectors, IRanges, ggplot2,
        RColorBrewer, Chicago, utils, graphics, grDevices, stringr,
        gridExtra, BiocFileCache, matrixStats, rtracklayer, patchwork,
        dplyr, tidyr, rlang, data.table
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocGenerics,
        codetools, BiocStyle, ragg
Config/testthat/edition: 3
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-10-28 23:36:05 UTC; root
Depends: R (>= 4.4.0)
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libuv1-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-28 13:21:11 UTC
RemoteUrl: https://github.com/bioc/PostChicago
RemoteRef: HEAD
RemoteSha: 9cba9c2cfa1fa8c1220d6cb8a1b55aac2c06fcc4
Author: Angelika Feldmann [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7094-8081>),
  Samuel Krall [aut],
  Belinda Blum [aut]
Maintainer: Angelika Feldmann <angelika.feldmann@dkfz-heidelberg.de>
Built: R 4.6.1; ; 2026-10-28 23:37:51 UTC; windows
