c73cf628da134dcfd9c455edddb03d6e *DESCRIPTION
31e35ead7d76be8731c8f228bdc0bcad *LICENSE
d00067a27da081f93c306198be77c7e0 *Meta/Rd.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
aed2ed57fa518b0fd6652fbfa0cca713 *Meta/hsearch.rds
c431d1a5e17c26867ffe28159ebe6505 *Meta/links.rds
3fc83a3943d1fe4dfce67dce28ab0a66 *Meta/nsInfo.rds
daf41f90b64435f572126b5c66096512 *Meta/package.rds
109a208dc333d0d619e67e73198d66b8 *Meta/vignette.rds
09754c9bb5e1c4827329a9e0ba97b396 *NAMESPACE
bcf0ad3f9433486cf992dc99494e81dc *NEWS
9ed5534f453ead258866e6241e2adb7c *README.md
0abbe36ff63531ab6dcd2992c1d6e041 *doc/first_example.R
eeee01eb487622d94b214d7eca7e6029 *doc/first_example.Rmd
ef807c810ac280764ab0651f6dce0a6e *doc/first_example.html
1672b080eab046db7a9991b9972350f6 *doc/index.html
ecc9b5a9b44d195476de44abd608f9e6 *extdata/first_example.cpp
d41d8cd98f00b204e9800998ecf8427e *help/AnIndex
d41d8cd98f00b204e9800998ecf8427e *help/RSeqAn.rdb
d22c3c4b0efc1914bf8847d57911858e *help/RSeqAn.rdx
923b8d61605e7d1d69297909d7481ed2 *help/aliases.rds
9dff599ae38d528a8d00426276d80d71 *help/paths.rds
f2592ba1c603db39c336bdcac13f4122 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
95d1169e531aaef92515a4202c74fb2e *include/seqan/LICENSE
97acf2daef8b6341656dfb9aa3b3b892 *include/seqan/align.h
11b50593ee9a13dfd71d2c794205835d *include/seqan/align/align_base.h
648e3393fe6f81f029ee7d9954a22c96 *include/seqan/align/align_cols.h
05fd7382db3bdf06224cb92391d8554d *include/seqan/align/align_config.h
4fa6cbf7a8d0396422861a6ac4b3e03a *include/seqan/align/align_interface_wrapper.h
21a827cf6248f6f4fad6fc4c90c15340 *include/seqan/align/align_iterator_base.h
185db746bf6c04aa19bd70e4c82e6aa8 *include/seqan/align/align_metafunctions.h
972217b5a60d2834121b7ecd66a76cff *include/seqan/align/align_traceback.h
2706819df68c14a515b6eb4cabb20b6e *include/seqan/align/aligned_sequence_concept.h
91f8b159736a67881f4884d29543b823 *include/seqan/align/alignment_algorithm_tags.h
9d45851169913c294b20f1d70ce529a2 *include/seqan/align/alignment_operations.h
2d36186de9268df820960e3551d02993 *include/seqan/align/dp_algorithm_impl.h
3858ad1c44f651b27876a36a6fbc3a60 *include/seqan/align/dp_align_simd_helper.h
19ba2e1265dd6ea5f2a5d106edd505cf *include/seqan/align/dp_band.h
e6897c84407c0780c534afab31c71ead *include/seqan/align/dp_cell.h
ff943170e02b7d767bb1f9a11db55c89 *include/seqan/align/dp_cell_affine.h
bf4c580a9a56179052248896b9d94be5 *include/seqan/align/dp_cell_dynamic.h
b34d706bc23b87c35669bc7e4796c149 *include/seqan/align/dp_cell_linear.h
94ab55494de0200f7ba3cde742b2bdc0 *include/seqan/align/dp_context.h
4b2078597375817590a99ccc0293f3ad *include/seqan/align/dp_formula.h
cf3b693b877776b7034667087560c260 *include/seqan/align/dp_formula_affine.h
7bc012d03fc930d0970f9f52223cdca6 *include/seqan/align/dp_formula_dynamic.h
489af9e54f2d5e2994b735ed287e5b50 *include/seqan/align/dp_formula_linear.h
31ca3ca6bb2c52520c0260151866cf32 *include/seqan/align/dp_matrix.h
f4fdad4689022586e15b9665dfb8926e *include/seqan/align/dp_matrix_navigator.h
9b2050fa92ff309b22ee91b9210b8ff2 *include/seqan/align/dp_matrix_navigator_score_matrix.h
9e28bb40658041f823865eeedb06547f *include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h
8d5c8b9628105b98eceeeda510951acf *include/seqan/align/dp_matrix_navigator_trace_matrix.h
e07a19c05777983fafbfad1d683cea3b *include/seqan/align/dp_matrix_sparse.h
973f4748ff90b581723a6ad83ca9b7e6 *include/seqan/align/dp_meta_info.h
bc27491aa86a63a2f1ed53eb84711409 *include/seqan/align/dp_profile.h
0ff1550633d9b0b1045b0f2dd10201e3 *include/seqan/align/dp_scout.h
9ef072995a20141ed7dae66a5ae9df79 *include/seqan/align/dp_scout_simd.h
53077b201f1d78a61453469ff0a7cfc4 *include/seqan/align/dp_setup.h
ac05dbfd5d33aec33a8c4c1942ab60b3 *include/seqan/align/dp_trace_segment.h
9e7eacc2f5cc505cfb997ea3244d78c0 *include/seqan/align/dp_traceback_adaptor.h
d28d4f21b099fedae09bf501e5b5fcb3 *include/seqan/align/dp_traceback_impl.h
0fbe1a6154eae2b70cd80c077ec5bc65 *include/seqan/align/evaluate_alignment.h
05089245a56dee3dd8508cd1a2e04838 *include/seqan/align/fragment.h
3ee544842b2ccad61e9c3c1a609d3554 *include/seqan/align/gap_anchor.h
671e8d079dcca1a8b79e235d8d598973 *include/seqan/align/gapped_value_type.h
5fb357f8a52b14b21d4642b8a733b3ef *include/seqan/align/gaps_anchor.h
17b9d0030988f0eb35621ecbfa517ab9 *include/seqan/align/gaps_array.h
bfa7843ec5042272700f8fef2afff75d *include/seqan/align/gaps_base.h
de67964d613791c796b34b0196949267 *include/seqan/align/gaps_iterator_anchor.h
a6c131a7c14fdbb81af6fdc5d94f2798 *include/seqan/align/gaps_iterator_array.h
084c0d8d4ffea730bf6525d3c48d630e *include/seqan/align/gaps_iterator_base.h
2d78a0d16083ec6dc27dfce0bfa3ef38 *include/seqan/align/global_alignment_banded.h
e23dfe0ab938d585f6cd845e8975e7d7 *include/seqan/align/global_alignment_hirschberg_impl.h
5534e72f2d16c03e82a8bc92269e4586 *include/seqan/align/global_alignment_myers_hirschberg_impl.h
28c7e6234f5b7b809d98ff0fdcc4f619 *include/seqan/align/global_alignment_myers_impl.h
ce52b70e10a94a27b3700be18485287a *include/seqan/align/global_alignment_specialized.h
dfbb2d8369ae928bfc44f04cf7727c41 *include/seqan/align/global_alignment_unbanded.h
8b000220cd75886a1d8d57f2ff9fe7d7 *include/seqan/align/local_alignment_banded.h
0f2c2b112d882a21112c692bc372aba3 *include/seqan/align/local_alignment_banded_waterman_eggert_impl.h
5d33569a646623f05a81b727d570447c *include/seqan/align/local_alignment_enumeration.h
6f3a3ec0d5d691cbe2e48d713f280014 *include/seqan/align/local_alignment_enumeration_banded.h
0988b8467c78e2738c013d3f4fe3afa9 *include/seqan/align/local_alignment_enumeration_unbanded.h
e001be1dac9f698b0f23f07ca7b88a5c *include/seqan/align/local_alignment_unbanded.h
d1af9401d9b1e36aec1e1e2f6c4466f5 *include/seqan/align/local_alignment_waterman_eggert_impl.h
7c79f3d0ffbea9853fa6eb6158de1fc0 *include/seqan/align/matrix_base.h
e5233efb45be882fd5ee0877363aede8 *include/seqan/align_extend.h
9fc756e7b2aa3819f4ed91f7fa944b43 *include/seqan/align_extend/align_extend.h
5f983b94de5262138dace4d59420356e *include/seqan/align_extend/align_extend_base.h
cc5fcb6fa54d5821f4d8bfe9342e1274 *include/seqan/align_extend/dp_scout_xdrop.h
873b32cc41f9c196d949ac88328a4ba0 *include/seqan/align_parallel.h
124e6c6b90c27d1fc1e0b5d5503e6ffd *include/seqan/align_parallel/async_wave_execution_interface.h
9aafbc19a1c4311a1999cbc34c0d5d40 *include/seqan/align_parallel/dp_kernel_adaptor.h
647811f7a635873d9350fc47074c02e6 *include/seqan/align_parallel/dp_parallel_execution_policies.h
8d4c0f778f496f3022a1c7784391d37e *include/seqan/align_parallel/dp_parallel_scout.h
a6a8c37a9b9615f69b48b1e5559e3c22 *include/seqan/align_parallel/dp_parallel_scout_simd.h
4f4fce94261faeaad460f5fe58522a2e *include/seqan/align_parallel/dp_settings.h
90246d3214f79d17330fd0f76c52ce6b *include/seqan/align_parallel/dp_traits.h
25afaaa6446086d7f519832898a01a72 *include/seqan/align_parallel/parallel_align_interface.h
16f1ef2f16747b5d042349a098c97986 *include/seqan/align_parallel/wavefront_alignment_executor.h
3e511af98874457b1c8b21f6c0736322 *include/seqan/align_parallel/wavefront_alignment_result.h
d11872e7fcdbbbe75ef78aa748896283 *include/seqan/align_parallel/wavefront_alignment_scheduler.h
a066287bc2186c7ea31c8935ad450732 *include/seqan/align_parallel/wavefront_alignment_task.h
166b94c6533ea88f2a1fcef12210c319 *include/seqan/align_parallel/wavefront_alignment_thread_local_storage.h
7836d41773452aef6484f16d7cbf3195 *include/seqan/align_parallel/wavefront_task.h
e6bdca45873d57b52ff7534c82d74a4f *include/seqan/align_parallel/wavefront_task_event.h
ec96dea2824c652c519f3dcf10a93dbd *include/seqan/align_parallel/wavefront_task_executor.h
523e48ca6bf224a243e821474b77d6d9 *include/seqan/align_parallel/wavefront_task_queue.h
71a10e0ea7361e52fae97ee53e6f0ec6 *include/seqan/align_parallel/wavefront_task_scheduler.h
4d0f23e39c3c568e3579867704e61dd6 *include/seqan/align_parallel/wavefront_task_util.h
7572b84f7d849e479e37de4f2f17354c *include/seqan/align_profile.h
4713530f7e8469e4a9a1374cd0545b44 *include/seqan/align_profile/add_to_profile.h
c1bfc86b6cba8b9a302378675b3009bb *include/seqan/align_profile/score_profile_seq.h
774c67ce7945d41ac8b7e09bb3ae272e *include/seqan/align_split.h
6acd3aae96c2e5092762a888b499e73b *include/seqan/align_split/align_split_interface.h
8f3b0cc03cbf9572ff695e04da4705a9 *include/seqan/align_split/dp_scout_split.h
b83167cd4c12b4614865b7bf3139e3a6 *include/seqan/alignment_free.h
8c98ee499e9ea2f7c8fea13a9f944ef3 *include/seqan/alignment_free/af_d2.h
6719af1bdea1715a05a4c7e58393c3e4 *include/seqan/alignment_free/af_d2star.h
c4f595cb8c9ae4146af829f9d382d9ec *include/seqan/alignment_free/af_d2z.h
4bba82de04d624d590f26166d1d73d3b *include/seqan/alignment_free/af_n2.h
7dea9b73b925d491e318904ea319b32e *include/seqan/alignment_free/alignment_free_base.h
197706e91ed4705731498bf74cad5ef8 *include/seqan/alignment_free/alignment_free_comparison.h
ba5f075f1d65cbf11324bf9d9cef7c85 *include/seqan/alignment_free/kmer_functions.h
ebe1fd97d2d029305dd1d80208eaabbb *include/seqan/arg_parse.h
ecb29c486b5d434c9ed4ca155439d3ec *include/seqan/arg_parse/arg_parse_argument.h
5a38c0c2d62dc309cb1cf0c047879b50 *include/seqan/arg_parse/arg_parse_ctd_support.h
00537690413a44b0d59c135c610381e2 *include/seqan/arg_parse/arg_parse_doc.h
ba9135cba056663563532875bf3eade6 *include/seqan/arg_parse/arg_parse_exceptions.h
0575b7832a9750f45c2c08ff6048af69 *include/seqan/arg_parse/arg_parse_option.h
357ac09f2a5c552e426b5f1602474a85 *include/seqan/arg_parse/arg_parse_parse.h
dc3c1215a38e6656f2b1e2b14c2c4e07 *include/seqan/arg_parse/arg_parse_type_support.h
c6e95b0f718cc4ea2d7a57c3d52b7f01 *include/seqan/arg_parse/arg_parse_version_check.h
89b7f0351a1ce45de3eda7058fad6742 *include/seqan/arg_parse/argument_parser.h
b8accccaa6caa197c17f8d2ef83b3cca *include/seqan/arg_parse/tool_doc.h
b614a2bd74c2be1c428d715384c6a88e *include/seqan/arg_parse/xml_support.h
d4389b6ebb292b0cf0453c4d664a6bd6 *include/seqan/bam_io.h
ef4b274f52e7a54b2a7abc74778b856c *include/seqan/bam_io/bam_alignment_record.h
61cbf9f4fe06ef17677ed742cef77bb2 *include/seqan/bam_io/bam_alignment_record_util.h
3309c25cd5e10b0850946236c7fe3ea7 *include/seqan/bam_io/bam_file.h
72a2e116f5a0b55fe5df152ae1ee2eda *include/seqan/bam_io/bam_header_record.h
2e7b7d8cb15ce7cb113f5195c3855609 *include/seqan/bam_io/bam_index_bai.h
479f18543ebe791026d7e3f7d6455cec *include/seqan/bam_io/bam_io_context.h
b8f598d9c500682736318597c8594098 *include/seqan/bam_io/bam_sam_conversion.h
97203bf29767c25350c8b1840c73def2 *include/seqan/bam_io/bam_scanner_cache.h
ee5d75093d7efd410bb4791fc2feb0a5 *include/seqan/bam_io/bam_tags_dict.h
1b03efe3fdafbd8da18a9fa354886261 *include/seqan/bam_io/cigar.h
a70e9a6aabd38a2e0ef9f2484f71c877 *include/seqan/bam_io/read_bam.h
9bdd5c935de5bd0d84d4ff0f40f11fa4 *include/seqan/bam_io/read_sam.h
3257f9daa81da4c1a169229c1408a39e *include/seqan/bam_io/write_bam.h
34c6ef097658a9c45efb55ad0bfd35f6 *include/seqan/bam_io/write_sam.h
3a370d4073e4c47a41bf42dd07b50cb1 *include/seqan/basic.h
20ec13f0abeea618c5841c0d431b9c08 *include/seqan/basic/aggregate_concept.h
c2030f1d113d81c534c384d9c683377c *include/seqan/basic/allocator_chunkpool.h
fe4e2034bee33ab92a35167e966a15a0 *include/seqan/basic/allocator_interface.h
9f9d729c770658392dbecbc5fe21896c *include/seqan/basic/allocator_multipool.h
0b3da3eb3d28566faae9aedf46e4f37c *include/seqan/basic/allocator_simple.h
10ab74d15cd5d2f2b91ede835282b83c *include/seqan/basic/allocator_singlepool.h
025b3d16ef9d06ad8791a62fef655202 *include/seqan/basic/allocator_to_std.h
d57a2996c329e9a44faf196841d6f986 *include/seqan/basic/alphabet_adapt_builtins.h
423be820462dc91938f04df0a802dfea *include/seqan/basic/alphabet_bio.h
ebc460734e2e30c067376be7a8555498 *include/seqan/basic/alphabet_concept.h
e4a3e001a97628f550120076d8d88904 *include/seqan/basic/alphabet_math.h
1621ee22ea0ac56bbd19beccc33b5c1f *include/seqan/basic/alphabet_profile.h
d41b238a2583fcb592df0ac145f52ba5 *include/seqan/basic/alphabet_qualities.h
18ff185db3b4af8a38de7499631ff508 *include/seqan/basic/alphabet_residue.h
58c48dd705b437ca9c3af6f6ae171369 *include/seqan/basic/alphabet_residue_funcs.h
43e35551c0e46d831ab592dd5eba14b6 *include/seqan/basic/alphabet_residue_tabs.h
baf840e5c25c9ffa0b67062c9ff61a23 *include/seqan/basic/alphabet_simple_type.h
bb5aa142c0717ee3bd8beb3b5b52c341 *include/seqan/basic/alphabet_storage.h
21a312516233fa72f99a41a8725af76e *include/seqan/basic/array_construct_destruct.h
b050ee439218d870b9c8aa96c1705d39 *include/seqan/basic/basic_aggregate.h
c03163aa5e8cc26a9093e5a03f8a2e6c *include/seqan/basic/basic_allocator.h
7b1c7a6694eaf5bf671c44f8d9f6a7d6 *include/seqan/basic/basic_alphabet.h
ca9780e9722ce47ae3e044d9ffda5713 *include/seqan/basic/basic_concept.h
0efda94f1e8cd9443a116f8c9366b363 *include/seqan/basic/basic_container.h
5bfa5675800ba50cbbe728b1db82a93c *include/seqan/basic/basic_debug.h
cddd58b0f7aa6f8477aa0f83b7cbe108 *include/seqan/basic/basic_device.h
181bb2c745c026169429376fdf8bc789 *include/seqan/basic/basic_exception.h
983d8576ede4eae05ef606e73acc66bf *include/seqan/basic/basic_functors.h
7dad060c6bb39ded61b51fa08202ce3d *include/seqan/basic/basic_fundamental.h
6474357c23c709bb0afed1bd195207fe *include/seqan/basic/basic_iterator.h
04eb30676e79dcbf183e78ff408a3e85 *include/seqan/basic/basic_math.h
f2ff5674d938b12b558b4fc92ada121a *include/seqan/basic/basic_metaprogramming.h
7af70a44fb4cd28fc9736cf1fe25dbce *include/seqan/basic/basic_parallelism.h
95a239777aee3adad98e2db2349df694 *include/seqan/basic/basic_proxy.h
882819c4b59c63b6e29d847e6324210e *include/seqan/basic/basic_smart_pointer.h
bbe5eff8d8495418952102be6e2b2896 *include/seqan/basic/basic_stream.h
4ab3f802ddb2edb63e14c66c1ee56b3d *include/seqan/basic/basic_tangle.h
62dd260f87bcb560277b9eca28f0ca98 *include/seqan/basic/basic_type.h
461d60a3daa6ad7b86af9cfab51aacaa *include/seqan/basic/basic_view.h
d3bb2725375cf21ed64bcf3609ffae7f *include/seqan/basic/boost_preprocessor_subset.h
0c61ba55259a8ef3348268fceda11a3d *include/seqan/basic/builtin_functions.h
7a743e2bd482c2a88e74ec9f344aa8bd *include/seqan/basic/concept_checking.h
8a3278e4ad3bb6a29db33a88ef99571c *include/seqan/basic/container_concept.h
3a2d734903aae88b727720a85876e84d *include/seqan/basic/debug_helper.h
ab99251bc415daf707f1a856941a28b3 *include/seqan/basic/debug_test_system.h
4077aad31d7b7314e09c94ef4f3ef230 *include/seqan/basic/fundamental_chunking.h
340a0182f36958b7b147c1843fa30d1a *include/seqan/basic/fundamental_comparison.h
1bb909f2c6fe998a405504f13af03fc4 *include/seqan/basic/fundamental_concepts.h
63a85c71a6293e4dc9ddcbe0a7134790 *include/seqan/basic/fundamental_conversion.h
fe62b40eda80bee1ff57f90725f80619 *include/seqan/basic/fundamental_metafunctions.h
4ad879cacb058c18aeb9d858099a58a7 *include/seqan/basic/fundamental_tags.h
0df5d3d00d1e56debae59d7345a7d8f2 *include/seqan/basic/fundamental_transport.h
26eefd16ab1098bfd007a6b5ba53171e *include/seqan/basic/holder_base.h
ac3e2481b1f2aee3648f08303dc761a2 *include/seqan/basic/holder_simple.h
db42245cd998a3e6042446e381c01716 *include/seqan/basic/holder_tristate.h
279f11f2025b65374d28449562c2bafd *include/seqan/basic/hosted_type_interface.h
313f808bcf8d285c9cd857e3b9c6db5b *include/seqan/basic/iterator_adapt_pointer.h
56cd83b360d7979250fed3eacf76def5 *include/seqan/basic/iterator_adapt_std.h
a16daa40da7ac6d673547e1e63e353b1 *include/seqan/basic/iterator_adaptor.h
6760c583543b3a2f035c151f2d378bca *include/seqan/basic/iterator_base.h
8a84e8a8a9bf0f8b6fbced26506bbe39 *include/seqan/basic/iterator_concept.h
57e5f1bd2af06eb34f3a58a86569c057 *include/seqan/basic/iterator_counting.h
03a6a018fd6dcd0255665ec6f3d4b00d *include/seqan/basic/iterator_interface.h
812010e75cb0ce07105e1254f55caa3c *include/seqan/basic/iterator_position.h
4b64076fc0534b7b2dd81792c020e389 *include/seqan/basic/iterator_range.h
8353ec847c2b0227cf3809e998ca3b85 *include/seqan/basic/iterator_zip.h
9e5391466f650569b92738c9d9e4edc1 *include/seqan/basic/macro_deprecated.h
36b79fd844e79ee7b118d0dd1f755776 *include/seqan/basic/math_functions.h
0458e1a16dda6007feb2ce280b80ba28 *include/seqan/basic/math_log_space_value.h
9af5381bb2c21e8f560694aefe30ce80 *include/seqan/basic/metaprogramming_control.h
3ed4e0070dc83297b0f1682cd018edd8 *include/seqan/basic/metaprogramming_enable_if.h
d3f9c3d685f2095f211a07bb3e8b5c90 *include/seqan/basic/metaprogramming_logic.h
664c70dfb4fcff1c8e298740ed7b18ba *include/seqan/basic/metaprogramming_math.h
6853e02c3cc1b3dae44622ff25722f52 *include/seqan/basic/metaprogramming_type.h
00a657303607e5951bce0ccd8bf51ab6 *include/seqan/basic/metaprogramming_type_algebra.h
75fa5dedc244a3a0fc6d4899a8e52de0 *include/seqan/basic/pair_base.h
e04268c717f26d178bbdbe297a58540b *include/seqan/basic/pair_bit_compressed.h
4bcd164ce4b6b5113fe4cefaf461e5b7 *include/seqan/basic/pair_packed.h
d3de16f2570d147d1aca873bedd97d0f *include/seqan/basic/profiling.h
3e312703502488268a99abebed1f7b36 *include/seqan/basic/property_map_concept.h
39cbd4cb36a5dc7449b4ca078030f237 *include/seqan/basic/proxy_base.h
6563079ec448f745e5aaa9e2c40f3a1a *include/seqan/basic/proxy_iterator.h
2e77a074ac2ff115bbddaae4ad2981e8 *include/seqan/basic/test_system.h
66fc24b80a51e9077bedac1e46b0f783 *include/seqan/basic/triple_base.h
304c7320b31630d73400bcb63c7c0547 *include/seqan/basic/triple_packed.h
5d6bff4f972db0ae1c2c96a313bd8679 *include/seqan/basic/tuple_base.h
b1a9d3585df24dc6fa65efb3ec1fc3db *include/seqan/basic/tuple_bit_compressed.h
c269e95dc32110f9dc8dc919e9f56fc5 *include/seqan/basic/volatile_ptr.h
b22bb1d558d053d7a508f62ca8c5852d *include/seqan/bed_io.h
6001c1a513931fd453916837de5271d8 *include/seqan/bed_io/bed_file.h
13d45cf91c776c7ba62e1cec74c27b2b *include/seqan/bed_io/bed_record.h
a0cae2159bef9ca7c0ce2ad84f6be8cc *include/seqan/bed_io/read_bed.h
44cd20992b5e30930390ea7a4294c6c2 *include/seqan/bed_io/write_bed.h
531d203b50f8fb019e60a9b514f1df42 *include/seqan/blast.h
3861bd35dca5f349f92d0a8bdb4fc263 *include/seqan/blast/blast_base.h
f5a1d31a675c411e79b5f9a6b94c6a5f *include/seqan/blast/blast_io_context.h
0c496eedd1f5894760c4838d8a8c1ab7 *include/seqan/blast/blast_record.h
1bc8edcc78e79f3174f6e87b1661bc75 *include/seqan/blast/blast_report_out.h
cf434d811b503e118432436c062543ce *include/seqan/blast/blast_statistics.h
bc3289cefae74ee0254fe45c3c1181fc *include/seqan/blast/blast_tabular.h
d5d240d0afe60d7b45a259546510821c *include/seqan/blast/blast_tabular_in.h
f643db883d8811f3edf998dea0373d7f *include/seqan/blast/blast_tabular_lowlevel.h
f9843559dae176baaee3e3a84049fdb7 *include/seqan/blast/blast_tabular_out.h
4c1a0886564014100b11514b06cd22d6 *include/seqan/consensus.h
1c612cdae679dec65cbc835709c92ab2 *include/seqan/consensus/consensus_aligner.h
7f31e161c70da751d1eb3527b0244931 *include/seqan/consensus/consensus_aligner_interface.h
21095303a910c1a5d417846eb1d56788 *include/seqan/consensus/consensus_alignment_options.h
e48d939875ddf652b7253a0aadbfa35a *include/seqan/consensus/consensus_base.h
e32f782bab53c9648a4b054279aca9e6 *include/seqan/consensus/consensus_builder.h
03396c8d91efa0055d3192752f7c85cd *include/seqan/consensus/consensus_library.h
782f1b99f68442d9e237b1f29b2bef7d *include/seqan/consensus/consensus_realign.h
35f449b45f8fd917d7776f27c9d005df *include/seqan/consensus/consensus_score.h
03b409655af80d0ff2630033540e45ec *include/seqan/consensus/overlap_info_computation.h
ad32e3b09bb6fd5b9d00836776fc5363 *include/seqan/consensus/overlapper.h
d69daf1da8180b07948068539539e55a *include/seqan/file.h
541ee2db18dfe2b03846b7766c114112 *include/seqan/file/file_base.h
64b84dd372c05300c706d5b540bf20fa *include/seqan/file/file_cstyle.h
639e1e09422fa314b0f488db7ab74cb9 *include/seqan/file/file_forwards.h
258fe3bc6a26ebf8ff8d0289ae2f3576 *include/seqan/file/file_interface.h
57e7dea9098f92ff026c539ffae0d305 *include/seqan/file/file_mapping.h
154ac38fb7f7e285979bee10c531c520 *include/seqan/file/file_page.h
9dc7e8ad919094bec175b2e8a30bd060 *include/seqan/file/string_external.h
f8a2e951476d69bcce9a557d7dcc1e97 *include/seqan/file/string_mmap.h
7f4eb8acf99534907cc1ba4d85add3eb *include/seqan/find.h
ff84cbd4683e39ba46130485d73aaf52 *include/seqan/find/find_abndm.h
ea4a9383becf55b8ade3035196f8e92e *include/seqan/find/find_ahocorasick.h
1a107191570c3942474cfdd518c4a5fe *include/seqan/find/find_base.h
8d0d915b2aae8735a7e08923bbd1567b *include/seqan/find/find_begin.h
3aeab804f46c623219cd75f2f68ee4d2 *include/seqan/find/find_bndm.h
3ddf1df61cee3f64ab01cc7cbb5d607c *include/seqan/find/find_bom.h
4b9225084d03e9c379dd211d368cee2b *include/seqan/find/find_hamming_simple.h
0a5410bf21cfe6687649cac1499b089c *include/seqan/find/find_horspool.h
8f6dbde2cfcc67ffc2bf80550aebd5dc *include/seqan/find/find_lambda.h
a1e0a15d27fc48870a7e213858f3b5c0 *include/seqan/find/find_multi.h
de839d7c884bb247d0b10ca54cef5ebc *include/seqan/find/find_multiple_bfam.h
c765024230725e83ccd7c3f2ac644221 *include/seqan/find/find_multiple_shiftand.h
2d1e855c002e63ff6d6840c0e0fdb7b1 *include/seqan/find/find_myers_ukkonen.h
b48920e199b2b72386dc1158b222309f *include/seqan/find/find_pattern_base.h
2fdda3240871504f54a31ba09f970e17 *include/seqan/find/find_pex.h
a530105131d52fbbcaaca8b0ce523d10 *include/seqan/find/find_score.h
447817c4cabd771c246f082a813a1719 *include/seqan/find/find_set_horspool.h
b5898b9d2c9bef381d43735324c8dd85 *include/seqan/find/find_shiftand.h
14006057e18c25bba42335f9a22b8c06 *include/seqan/find/find_shiftor.h
734278b25cf87b2352e12ead3e6ae6c8 *include/seqan/find/find_simple.h
c4c9d184c16ec34a338767cd5403b5f0 *include/seqan/find/find_wild_shiftand.h
e3b98bb841b6a5548127aae9c886347e *include/seqan/find/find_wumanber.h
0d512f3bf725723614fe4f637558d131 *include/seqan/gff_io.h
c8d477c8ed5a020b367d1b1aad2c3546 *include/seqan/gff_io/gff_file.h
e648d18c6aa8a61724f0a256b0cb38a2 *include/seqan/gff_io/gff_io_base.h
9bed8e560f88ed49fbfd4dfffb242468 *include/seqan/graph_algorithms.h
71b3bf8137ee665d8da5493c1a81af0a *include/seqan/graph_algorithms/all_pairs_shortest_path.h
cc0d27a2f2f67640d314c56786b76886 *include/seqan/graph_algorithms/bellman_ford.h
d3377dcb3fbd59b594c16d09735686ed *include/seqan/graph_algorithms/bipartite_matching.h
f8f4e96de237dcf96a91990e5a0cc217 *include/seqan/graph_algorithms/breadth_first_search.h
3a249cc04a6e35fc4f5d596d81d818c2 *include/seqan/graph_algorithms/connected_components.h
1a671319dc56a9a7fdb9b981846552fc *include/seqan/graph_algorithms/depth_first_search.h
de76a758d61cf547bbf9d3f7ace3da9f *include/seqan/graph_algorithms/dijkstra.h
e3b35976cedba33903780d2d2d711fd5 *include/seqan/graph_algorithms/floyd_warshall.h
99447026b3d26f407e3c85c2e530ba0d *include/seqan/graph_algorithms/ford_fulkerson.h
e5e632d27a5386cec84dc09eec93c6cc *include/seqan/graph_algorithms/graph_algorithm_heap_tree.h
338f03c2adc1cc16f9a25896e0957ca7 *include/seqan/graph_algorithms/graph_algorithm_hmm.h
b598daca7db1b5047a2a88a50bbca750 *include/seqan/graph_algorithms/graph_algorithm_lis_his.h
df2e97daf9521e859327bcea999cb20c *include/seqan/graph_algorithms/kruskal.h
b8fce4e47cde38ae13c21b23953c3e31 *include/seqan/graph_algorithms/maximum_weighted_matching.h
0b88f74278bfb36f90453d6eff676a27 *include/seqan/graph_algorithms/path_growing.h
06e954e758cf0b58b171883535611314 *include/seqan/graph_algorithms/prim.h
08a9c239a2de93a38d8d629cbe7e3b6c *include/seqan/graph_algorithms/single_source_shortest_path.h
b72c9864e95ba558ef4618d93a31dd61 *include/seqan/graph_algorithms/strongly_connected_compnents.h
ccd9f302234ebb5aae5c70c300f4b595 *include/seqan/graph_algorithms/topological_sort.h
6903da9f18241efc3be803ce76030bc4 *include/seqan/graph_algorithms/transitive_closure.h
493a98582edebe694d3b39fc684630fc *include/seqan/graph_algorithms/weakly_connected_components.h
74f295036de7f8664a272e130b3c47fa *include/seqan/graph_algorithms/weighted_bipartite_matching.h
6ad4976d480d660c59f1270e09b82d4c *include/seqan/graph_align.h
badbe27bccbf73c6ff1e82e12a740851 *include/seqan/graph_align/graph_algorithm_refine_align.h
1158d7ec8f40295c9947b9c189d9d701 *include/seqan/graph_align/graph_algorithm_refine_aligngraph.h
e0e3493c0c88f38b6a4f68ea90f23651 *include/seqan/graph_align/graph_algorithm_refine_annotation.h
bb440511923316fbcaae21c91333867d *include/seqan/graph_align/graph_algorithm_refine_exact.h
bd3d23c51e3413ebf7ad93bf69e0da2b *include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h
2d65458e228017c2546b70bd4ba3ed92 *include/seqan/graph_align/graph_algorithm_refine_fragment.h
42bad1db865ea62f1ac33594d9ebfd4f *include/seqan/graph_align/graph_algorithm_refine_inexact.h
85088548b5122c3a74f415589098cb30 *include/seqan/graph_align/graph_algorithm_refine_scoring.h
2bbf91f649cc76c74ed9d3db706084a6 *include/seqan/graph_align/graph_impl_align.h
bfdfebb5cf94c0407dc78dde5a10233a *include/seqan/graph_align/graph_impl_align_adapt.h
e8b42717472618d0eb78aeb3baaf35e3 *include/seqan/graph_msa.h
6fc870597dcb43d51b5fc5efe85d2be8 *include/seqan/graph_msa/graph_align_tcoffee_base.h
aa871cbeaedcb48f4c7853ff1687fa27 *include/seqan/graph_msa/graph_align_tcoffee_distance.h
baa75cd6e5cd9149598fe009ceca28f3 *include/seqan/graph_msa/graph_align_tcoffee_guidetree.h
918629100c5fe564c9e95d89d787f97d *include/seqan/graph_msa/graph_align_tcoffee_io.h
9cc6a00521aabbdb38335aa356308a08 *include/seqan/graph_msa/graph_align_tcoffee_kmer.h
cfb909238eb582e2e3467cba06877921 *include/seqan/graph_msa/graph_align_tcoffee_library.h
9930f3717a0924466403a6dc543d61bf *include/seqan/graph_msa/graph_align_tcoffee_msa.h
cbba5c4a21812663ce578d8ab7a639d9 *include/seqan/graph_msa/graph_align_tcoffee_progressive.h
6f67fc884f5c12ea1bcf213c00ab5583 *include/seqan/graph_msa/graph_align_tcoffee_refinement.h
4386b16fa47e3f5e0720c6b186fedfa9 *include/seqan/graph_types.h
337cc108ada9b56a372bce099cfd9d59 *include/seqan/graph_types/graph_base.h
9e5f0eba379589892313fe27911406ac *include/seqan/graph_types/graph_drawing.h
e7ddfbb6b745e189402f99aee4871199 *include/seqan/graph_types/graph_edgestump.h
410d9759f74e54563bb31902fd55bef8 *include/seqan/graph_types/graph_idmanager.h
8ab5fae4ba6aa2cc7857b1077acc372b *include/seqan/graph_types/graph_impl_automaton.h
05490ec0085e35c0dbb49ffe2935d67f *include/seqan/graph_types/graph_impl_directed.h
a12afba3e04bea733e4d3349ae8dd02a *include/seqan/graph_types/graph_impl_hmm.h
4d8a3756a488eddd9f1d08fff0b8d33e *include/seqan/graph_types/graph_impl_oracle.h
89db309d1d0264cecb4cca50e762c4cc *include/seqan/graph_types/graph_impl_tree.h
08fb190637d33162ae2db8bef0fe735e *include/seqan/graph_types/graph_impl_trie.h
9f03b83e2c879467a7a2f283c8161754 *include/seqan/graph_types/graph_impl_undirected.h
7b8fd24e8df6c0d153863b001d3c0b42 *include/seqan/graph_types/graph_impl_wordgraph.h
1dd9e4ce9b071c4d793bb541e3b43941 *include/seqan/graph_types/graph_interface.h
6d2dd6206528c89049d5c2b958fabcf1 *include/seqan/graph_types/graph_iterator.h
03172046f32df3632bd54e5c7a0bec86 *include/seqan/graph_types/graph_iterator_adjacency.h
62b8ae130e31fa88fc7cc22ffea24738 *include/seqan/graph_types/graph_iterator_bfs.h
4719a6ac357ab33efe5ab37f65d69d1e *include/seqan/graph_types/graph_iterator_dfs.h
fa54bc7b483160272a1886b7b7194884 *include/seqan/graph_types/graph_iterator_edge.h
25d17a9fbb61d6e1d317e4406be55c3c *include/seqan/graph_types/graph_iterator_outedge.h
a570aeb272d8c4022498549273ff9021 *include/seqan/graph_types/graph_iterator_vertex.h
499ffcafeaaf0513c67d75a2f03b4247 *include/seqan/graph_types/graph_utility_parsing.h
3997bb9179da25ab3cdfc07d77844d9f *include/seqan/graph_types/property_map_generic.h
66686d86af2464ef34948e814ff6e93b *include/seqan/graph_types/property_map_internal.h
3a2c5dc9d223a04a3db7d0683d4f0076 *include/seqan/graph_types/property_map_internal_pointer.h
56195965d9fb35cda8b83805f141c249 *include/seqan/index.h
202796c4ebd6ce33ec4f95110a822c51 *include/seqan/index/find2_backtracking.h
d0a1feb2b229dfbf5b34cf46a43427ec *include/seqan/index/find2_base.h
aee7134557d317fbbbefe3c1080c2919 *include/seqan/index/find2_functors.h
0264a63e8d80e3aaa6aa83aa3c4b90f0 *include/seqan/index/find2_index.h
898316236295877b9463e04b57ab4393 *include/seqan/index/find2_index_approx.h
26ca15c0dc649bb59671731988fe6eab *include/seqan/index/find2_index_multi.h
b7b5e4c9bb5bade827aa30b56afdb024 *include/seqan/index/find2_vstree_factory.h
bbf9a5c4307115ee49c10709bcb73880 *include/seqan/index/find_backtracking.h
5e8954634b56a5ec4f57bedb5f548de9 *include/seqan/index/find_index.h
4e2eab9dd95b5a1d65ba22a9338d46eb *include/seqan/index/find_index_approx.h
07cbd412eccd5b9be66b0f3e4d7ef4bd *include/seqan/index/find_index_binary.h
4d8a78e6f4abff39748e0b6ed02ee327 *include/seqan/index/find_index_esa.h
acecb736e3d4112d62b3041206687938 *include/seqan/index/find_index_lambda.h
096d26974f11406eb4e7ebf1b377a70b *include/seqan/index/find_index_qgram.h
725e7674a0e25fbb4b23e906b6e70d0d *include/seqan/index/find_pigeonhole.h
c359cd0c7c82b89dd4ef546f98f3705a *include/seqan/index/find_quasar.h
4a72a13e5910cd970c7ac96c548c9255 *include/seqan/index/find_swift.h
7584882c4fd8a31cf34bf3b56f7405f6 *include/seqan/index/index_base.h
457c18a1f3a5be5392f5687d77883023 *include/seqan/index/index_bidirectional.h
96efb1afb81fe4320f906fb95ffc35e5 *include/seqan/index/index_bidirectional_stree.h
e4e849e8b92d0ec1e167ff9de7bf4946 *include/seqan/index/index_bifm.h
f22b42230c8ffa430d5e411c3b67172f *include/seqan/index/index_bifm_stree.h
9db642d61108df8abbffa02927e2ba1d *include/seqan/index/index_bwt.h
ea3e5b788c5a93c063ad89056e80696d *include/seqan/index/index_childtab.h
aae23d2567fccf3aafdd35dbfb5a7bb4 *include/seqan/index/index_device.h
b0f889d7b7a82a5dc4bdb50498700780 *include/seqan/index/index_dfi.h
a1cd931c9982722f25a84555d263465d *include/seqan/index/index_esa_algs.h
f4c301b6189ce8dbd2b126a7423183be *include/seqan/index/index_esa_algs_multi.h
b1cd2ac288ed44a2a3b5fafcd92006c9 *include/seqan/index/index_esa_base.h
7fbc17c4088d0559edbf7e8dbfddfb05 *include/seqan/index/index_esa_drawing.h
d5c67c73bcf59c132c56264109c9f74a *include/seqan/index/index_esa_stree.h
16156bc338c519ee1004dbe5b1eb1b99 *include/seqan/index/index_fm.h
8adca2d2dc3adff50ebc06aece6f72f9 *include/seqan/index/index_fm_compressed_sa.h
4b329809f1205177724dd59b8f0ac841 *include/seqan/index/index_fm_compressed_sa_iterator.h
f79f152222579890fd26e2897880b7ff *include/seqan/index/index_fm_dox.h
0d33c059cf8a1a5d7df9bafda39d61af *include/seqan/index/index_fm_lf_table.h
ce96c339cc86ddc0d5de724628a6ccdb *include/seqan/index/index_fm_rank_dictionary_base.h
0ca43a6e94ea5533531a1344945181ef *include/seqan/index/index_fm_rank_dictionary_levels.h
ee4f0574dc493453e27264eb759e4e33 *include/seqan/index/index_fm_rank_dictionary_naive.h
48e95a0091583eae1337564baf894a4d *include/seqan/index/index_fm_rank_dictionary_wt.h
bf33b380141e7e266a8bd2d18fba7ecd *include/seqan/index/index_fm_right_array_binary_tree.h
172ce656248042252ded0d4b97eae2b3 *include/seqan/index/index_fm_right_array_binary_tree_iterator.h
56d791cb5bd4ce5b864d77724247b1aa *include/seqan/index/index_fm_sparse_string.h
4f212a2be6537517ca99833d035126f8 *include/seqan/index/index_fm_stree.h
c9bd367565b8f5c125eeeafbff5df79d *include/seqan/index/index_forwards.h
701c113df3d22cfa056d2c163209c750 *include/seqan/index/index_lcp.h
fa4b51a7776d1761b07042565c65da61 *include/seqan/index/index_lcp_tree.h
bf10f5ed257e8c254da2e4626b599eaa *include/seqan/index/index_pizzachili.h
4e5f3b1a218c1461fad8dd9e46823233 *include/seqan/index/index_pizzachili_find.h
8a10aafed9e80074cdcd333914ce6ccd *include/seqan/index/index_pizzachili_string.h
b9978486be2202b312e30d8b17ed013d *include/seqan/index/index_qgram.h
3ceb04de0432667ce38e024a2cf904db *include/seqan/index/index_qgram_bucketrefinement.h
4a651e9db70f272fce983d5551cea690 *include/seqan/index/index_qgram_openaddressing.h
3abb770e461e581aff5edaddbf112767 *include/seqan/index/index_qgram_stree.h
7b5500f54a8f540159a895f6e03b4683 *include/seqan/index/index_sa_btree.h
0423d7b8148b4a55d86e7079a10eb329 *include/seqan/index/index_sa_bwtwalk.h
8e584fec9ea7ba24a8aa52b4ec15cf5b *include/seqan/index/index_sa_lss.h
030a6e54fdfe5e2e486517deafcf4365 *include/seqan/index/index_sa_mm.h
7e9981cfd58b0dcfd52dc2205a043a89 *include/seqan/index/index_sa_qsort.h
f2f374959d201a300d2bfcabecda9764 *include/seqan/index/index_sa_stree.h
6ad381adf89b86b4f6f25c98c41970b2 *include/seqan/index/index_sa_truncated.h
9c0cf944e73971cd821d46affe277abd *include/seqan/index/index_shawarma.h
f203747b295b0211ec4199a9c94068f2 *include/seqan/index/index_shims.h
6f31b86af2eb0991e6af9922463f069f *include/seqan/index/index_skew3.h
387f52a316321ad552e16540f54b2467 *include/seqan/index/index_skew7.h
73851d3a2f544249566a50694a0c1f31 *include/seqan/index/index_skew7_multi.h
3e07caa62efdec31c84091933ec9d9d9 *include/seqan/index/index_view.h
03adf97cd7926810d815fb5b5eaba3b9 *include/seqan/index/index_wotd.h
b8f71f23166234da5e2a3775bd8e8ffd *include/seqan/index/pipe_merger3.h
d3194b0ff75b74240485ad1bebc08260 *include/seqan/index/pipe_merger7.h
9aacf4d9dd133293dfbd657a30a19b65 *include/seqan/index/pizzachili_api.h
06ff338d4c96d0b3bb37c1c0701798be *include/seqan/index/pump_extender3.h
f5a76bd6ed38b9acb66c53fcfabdd7bd *include/seqan/index/pump_extender7.h
01fb8b69bf780bb307a8085098c2c1ad *include/seqan/index/pump_lcp_core.h
912a213a79b1c1622da9b5d070ab4266 *include/seqan/index/pump_separator7.h
9fd19abb5c2731915a727c68a5d3a04d *include/seqan/index/radix.h
c855563d41fbda94fd261f872146ee9c *include/seqan/index/repeat_base.h
7d86521fdbd067ae9fe03cde1011bb97 *include/seqan/index/shape_base.h
416299b8b4477a0e7cf3a24210d73378 *include/seqan/index/shape_gapped.h
abb8b03c24dbfffb5bd4178ac7e78e5b *include/seqan/index/shape_minimizer.h
861cfb5b3c4eab36e99a5d9fd88d5f66 *include/seqan/index/shape_onegapped.h
54e4f8068b4851874fa08dc29d559dcf *include/seqan/index/shape_predefined.h
ab1c9040021d7181e128ded80ebb7884 *include/seqan/index/shape_threshold.h
5cf573d2264e5a3c5245eacda318623f *include/seqan/journaled_set.h
09325c03971ff7fc8eb7d053352d7924 *include/seqan/journaled_set/journal_alignment_interface.h
68e9f9cbc72ab3a13989c1791fce7fb0 *include/seqan/journaled_set/journal_alignment_traceback_adaptor.h
387deba8a1b9c1e5a18401e5c304a18e *include/seqan/journaled_set/journaled_set_base.h
9b1b00be27b7924a15e130e3f4034804 *include/seqan/journaled_set/journaled_set_impl.h
5c1388ab6d0c2b485b65418557786634 *include/seqan/journaled_set/journaled_set_join.h
3de3a7e8dd3231df64ea7eacc81d76a1 *include/seqan/journaled_set/journaled_set_join_config.h
22f5caa8fd10b29b723cd850d2175f36 *include/seqan/journaled_set/journaled_set_join_global_align_compact.h
ddb3c07a5103d7b75a12a7d305b241c8 *include/seqan/journaled_set/journaled_set_join_global_align_manhatten.h
750e1015901b660cfe1f896a7c716daa *include/seqan/journaled_set/journaled_set_journal_trace_descriptor.h
2c752361e686fe8a15a6546a03e3a84a *include/seqan/journaled_set/score_biaffine.h
5c4a70064b182fba1d169df566187752 *include/seqan/journaled_string_tree.h
92c3fe74f9608bac60059084798a83cb *include/seqan/journaled_string_tree/delta_map.h
05f132847e7215659dc5f2574e4229d8 *include/seqan/journaled_string_tree/delta_map_entry.h
4039b27e36dbbfde32e14a80bbef0c68 *include/seqan/journaled_string_tree/delta_map_iterator.h
f0d8a40bbb509d8e28974922ff56e571 *include/seqan/journaled_string_tree/delta_store.h
9da5d6c0853838cc90ea02b7e3f37a49 *include/seqan/journaled_string_tree/journaled_string_tree_base.h
15b48d272bc4987361b950d2bbdb622e *include/seqan/journaled_string_tree/journaled_string_tree_impl.h
e4b64dce07eefefa3864058b88ca930c *include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h
7bd9f243a973567d2cf17a32556dd517 *include/seqan/journaled_string_tree/journaled_string_tree_traverser.h
b9902ece8ec62e2183bfc5ef754c5068 *include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h
da0956fb87f731dbb03d1a6b52de98c0 *include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h
3933c87774a1e268a242503b2acb76d5 *include/seqan/journaled_string_tree/jst_extension_base.h
9fc5d56f6a0c5360734f50e58b433044 *include/seqan/journaled_string_tree/jst_extension_horspool.h
1d1df540d2f52c89011ec14c1730a441 *include/seqan/journaled_string_tree/jst_extension_myers_ukkonen.h
b35057361a644586af5fc4b523d797bb *include/seqan/journaled_string_tree/jst_extension_shiftand.h
84a85673334d4c902cc2acd2563f6bc8 *include/seqan/journaled_string_tree/jst_extension_shiftor.h
62497a07a3fa0ded97a200e729855bc5 *include/seqan/journaled_string_tree/observable.h
da543884f22d3f46f95d331de375363a *include/seqan/journaled_string_tree/stack_observer.h
3bcd0fbd0f10e6a7b656f8cb28c47f52 *include/seqan/map.h
cba7ad1fa7c7d6587956a01fb544f802 *include/seqan/map/map_adapter_stl.h
2d670365cedae6585d5aca1df8be75dc *include/seqan/map/map_base.h
b608bb26fcf9e5a2a189de8f64add8bb *include/seqan/map/map_chooser.h
839709c2728a2572c5ec91d003194848 *include/seqan/map/map_skiplist.h
dbacfff6d30d45e6a260d6eba2875bd8 *include/seqan/map/map_vector.h
e6208100debfa30d07ee2f76b51c9b16 *include/seqan/map/sumlist.h
147a3469bd273f16e92e2f6b18ca6805 *include/seqan/map/sumlist_mini.h
3cf4726a66ae067604582a3b9e75d9ae *include/seqan/map/sumlist_skip.h
5f100f3cc69c31a5536c05e04df668f1 *include/seqan/math.h
6d83d523444338eda6bf446d1274d38c *include/seqan/math/math_common_factor.h
18126aa8e8399d39c87a8100a559be32 *include/seqan/math/math_operators.h
92953f6c6ea39ab4ca203e572f5cf3a2 *include/seqan/math/math_rational.h
ab7f6a0e94d33dc19d10679a1a7abb8b *include/seqan/misc/accumulators.h
5e6c8ead8c8c5b2487f34ee0af6e8c65 *include/seqan/misc/base.h
9dabe2157c12b33c34b5a366f1255bf1 *include/seqan/misc/bit_twiddling.h
6024818422be95316c74a7a9ff6f4db3 *include/seqan/misc/bit_twiddling_functors.h
b4e778037fd7b5704a317a6d435c3154 *include/seqan/misc/dequeue.h
eabef6e01b971e021475fbcca04b1090 *include/seqan/misc/edit_environment.h
94875db0847bf13009f1e634fc8a20bf *include/seqan/misc/interval_tree.h
6eda4b1b9ec3a6e9ee31d50135e9c452 *include/seqan/misc/map.h
8e6b931e88cdda779e13d89fdb8280d7 *include/seqan/misc/memset.h
59ec7587a2fa40f0d7f8ea50e841f0f9 *include/seqan/misc/name_store_cache.h
c9fa62f1cc8e71d39dc4ad987d9b7c1c *include/seqan/misc/priority_type_base.h
fb2150342535220de938406ec2295a54 *include/seqan/misc/priority_type_heap.h
83dd151f1ff2d717621bcf6f126cad18 *include/seqan/misc/set.h
c9d3b5ddea2d8a186d98105b0a9ee18e *include/seqan/misc/svg.h
db789283cb885647c953f2f228b87547 *include/seqan/misc/terminal.h
8f61d9a30fd8478c9108d71a9eb2aa31 *include/seqan/misc/union_find.h
bbc886e71ac138ecad97a304faf16ff0 *include/seqan/mman.h
2cd0f29b08f04e7e1cf3c2ca0d9b2f4c *include/seqan/modifier.h
d3b312d7b2137ead25f518aa0775b05e *include/seqan/modifier/cyclic_shape.h
e198d906975cabed55073aac725f8fff *include/seqan/modifier/modifier_alphabet.h
d238a1daa97a114202e34a8174777bdd *include/seqan/modifier/modifier_alphabet_expansion.h
8dc546395f30a8bcca814f2a742d3cea *include/seqan/modifier/modifier_cyclic_shape.h
764d2b9e3470758b2326016eae68ba83 *include/seqan/modifier/modifier_functors.h
0c62f6e619b2815dc1188bf78c9468c0 *include/seqan/modifier/modifier_iterator.h
e5402cb96680cc355a1c129920263faf *include/seqan/modifier/modifier_padding.h
559bd4e52bad04484e4f28a7d2a003c5 *include/seqan/modifier/modifier_position.h
b251dc6e9a73a2e9a11df41378fd2079 *include/seqan/modifier/modifier_reverse.h
d14e6b6dfbd89a886d9eb9e4e73de422 *include/seqan/modifier/modifier_shortcuts.h
1553ce020fe3fa355dc130cf01f91d19 *include/seqan/modifier/modifier_string.h
4c079025d98469de997420c7e1ad1b3f *include/seqan/modifier/modifier_view.h
00c123b31ecfe45a1a2abf49c1ad9ee5 *include/seqan/parallel.h
1489278e3a9e2f2fab691799a5c331d3 *include/seqan/parallel/enumerable_thread_local.h
b08a1a505680e117e8fffabca6db62f7 *include/seqan/parallel/enumerable_thread_local_iterator.h
4a439469d81bb4825aa16d01698a9089 *include/seqan/parallel/parallel_algorithms.h
2ad877911ab96fe25d6847dd2eb20aad *include/seqan/parallel/parallel_atomic_misc.h
cddbb02355fedfd58300196bc86b4cf9 *include/seqan/parallel/parallel_atomic_primitives.h
b9e6c82e894f0a51fb7286c0ab5f3e89 *include/seqan/parallel/parallel_lock.h
b4212d52f27a0de3ab5aedec95114be8 *include/seqan/parallel/parallel_macros.h
c72a3e70f19750c7a018e4644640cfac *include/seqan/parallel/parallel_queue.h
50e9dfdf4450541a010472d2c9b2c10c *include/seqan/parallel/parallel_queue_suspendable.h
4902df5de5ecbebc59109f8aedcfe504 *include/seqan/parallel/parallel_resource_pool.h
f27dce7649f50a84ee2939f3e1df2852 *include/seqan/parallel/parallel_sequence.h
488c65978c3977a1d918ee9935301f17 *include/seqan/parallel/parallel_serializer.h
f17d510973a8fc04620fe358b82ddaa7 *include/seqan/parallel/parallel_splitting.h
fd8ea8af4a8cf8c270e6c83b7a2881e0 *include/seqan/parallel/parallel_tags.h
8abdf760d4157a2fae2767045dd09855 *include/seqan/parallel/parallel_thread_pool.h
95680f16b402a8761c93a707f2156448 *include/seqan/parse_lm.h
11490c9fec79d89470e2773e72e8f378 *include/seqan/parse_lm/local_match_store.h
a19dc049ec0a64cb79c901e73bea1720 *include/seqan/parse_lm/parse_blastn_tabular.h
6ad9166cd1fa906efcf8a27f972f1e23 *include/seqan/parse_lm/parse_lastz_general.h
589351d14778f1524824c95e4989ebb7 *include/seqan/parse_lm/parse_stellar_gff.h
b7cc48d8f23ef3b51f3805e650b25c9d *include/seqan/pipe.h
4165e3fd20896c1d55e3e71a896f1ac1 *include/seqan/pipe/pipe_base.h
e42ef9103002a29602ff9f1631891b89 *include/seqan/pipe/pipe_caster.h
eb3c9051d2dc3f505cc05abcec247cf4 *include/seqan/pipe/pipe_counter.h
ea0e2474606e23fe90c9da1eb928eebf *include/seqan/pipe/pipe_echoer.h
101ecf8f5f6063882e0105015ab34c5b *include/seqan/pipe/pipe_edit_environment.h
e7593d256f23f330f93daca7ae1c4892 *include/seqan/pipe/pipe_filter.h
92c7eeea7a254d54d3acb4846abc19dc *include/seqan/pipe/pipe_iterator.h
7d76cccca426b06743501cd9afe70f2c *include/seqan/pipe/pipe_joiner.h
d965680ed8071cab388c94cc0d0e9b79 *include/seqan/pipe/pipe_namer.h
abe16cafe08f1dcaf6a2801a1fec9fc7 *include/seqan/pipe/pipe_sampler.h
a5c949e67b2680a8a17bbb5bd09f9fbe *include/seqan/pipe/pipe_shifter.h
f604a5b1408b2b5c845e97c4246c1bcb *include/seqan/pipe/pipe_source.h
c70675aaebf83747cbb13079ef348425 *include/seqan/pipe/pipe_tupler.h
d3859319f76ded1c39b39e8fb9cf8f9f *include/seqan/pipe/pool_base.h
3f056c3cf55cbb779912725d1a2fdc4b *include/seqan/pipe/pool_mapper.h
85d41b25669d463fd9d72f92c37fb5d2 *include/seqan/pipe/pool_sorter.h
4723f3112de0c894f5d0f1ff1ccee97f *include/seqan/platform.h
e63b7780f6b6ad46cd2e2ad465c355c3 *include/seqan/random.h
9aeadab817fc99f2a03b6c181c378709 *include/seqan/random/random_base.h
09fca4a8272a61416cd97ef6668b2f2a *include/seqan/random/random_beta.h
35268fbf3e1e566b2ed1463534f16dc8 *include/seqan/random/random_util.h
3aec2fd3c76a3e56aa36b6daec43342d *include/seqan/realign.h
79461e286f80a372dfce1a290c6b6321 *include/seqan/realign/realign_base.h
6eb3d1a69781b83bd84c310347b907ac *include/seqan/realign/realign_helper_functions.h
1d5df37b72c58f086811c3fab1c69186 *include/seqan/reduced_aminoacid.h
e46d0d48bb342a8088516e9972c815d7 *include/seqan/reduced_aminoacid/reduced_aminoacid_base.h
625067607474b1779761ff11098eca49 *include/seqan/reduced_aminoacid/reduced_aminoacid_base_late.h
016a900b6c85fb02493981f44d8c3ed0 *include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_base.h
9885971278b7d68c12fed9b11e810c73 *include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_tables.h
98f8cb3fd58e20cf4b038faef4917ee2 *include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_base.h
003f05dd28f5abfaa3dfb500da90be60 *include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_tables.h
e14b923e27d2bec748039ed1b8b2fab4 *include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h
81dea0e236d4ea8cb9e07e42cf14633b *include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_20_to_n_b62.h
1bd94c6f84b72b034a798d7b802872b7 *include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_22_to_n_b62.h
69f86f7b8125607f2650a7b1050bcd7d *include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_24_to_n_b62.h
9a0801f959fd03d0e879dbe89426b142 *include/seqan/reduced_aminoacid/reduced_aminoacid_li10_base.h
bf13d23fc50c27e0b513a05d79f31235 *include/seqan/reduced_aminoacid/reduced_aminoacid_li10_tables.h
27c8dd052edbd7d80c697c3eaf84790a *include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h
c86c71bd43d91cbcaf54ed3a7d8abd45 *include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_tables.h
20ca07adbaf0abcd35aa4eb991fe4298 *include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_base.h
c22c89cd5b6f80e6d843ced37d80d12a *include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_tables.h
150278b7efc51c4c5ffcbfc71011a372 *include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_base.h
ffea894396bb68a1e0f5854eb401fb92 *include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_tables.h
c6f4710d6165da751e123d53d1e9cb1d *include/seqan/rna_io.h
db46a1e0ffb469b72067b605411e0385 *include/seqan/rna_io/bpseq_read_write.h
b97d8db372cf001036864560a596107d *include/seqan/rna_io/connect_read_write.h
eec51e7845f0982ed51e620465018e76 *include/seqan/rna_io/dot_bracket_read_write.h
9acdeaa0a439a4cf74f171101a491a0f *include/seqan/rna_io/ebpseq_read_write.h
acee8f73a13bef9fd1c3686b8f0d2cb3 *include/seqan/rna_io/rna_header.h
fe3b818d8874e0bd08ae2a6b5972d811 *include/seqan/rna_io/rna_io_context.h
bf24bfe8aaee43e82c657c7647003314 *include/seqan/rna_io/rna_record.h
1cd5a9b6026642a62e4382cb28731576 *include/seqan/rna_io/rna_struct_file.h
c1e06a919c6515945ca2c0f1e444bdaf *include/seqan/rna_io/stockholm_read_write.h
9314d340eec46189ded718b4caf0eb35 *include/seqan/rna_io/vienna_read_write.h
16642f28cf7c35efd65384f028ac34d3 *include/seqan/roi_io.h
d5045021581c8635fad7fbeb8a7b6cd2 *include/seqan/roi_io/read_roi.h
7e9cf139a72e90b7bd8c2412992ef021 *include/seqan/roi_io/roi_file.h
03f4ee373d0a90832f702b556cbe0f05 *include/seqan/roi_io/roi_io_context.h
d717d0071e04c1651b2b16e10e588665 *include/seqan/roi_io/roi_record.h
a9dc70c114ae4e8e2941f08e6625b1f9 *include/seqan/roi_io/write_roi.h
fd53147e8120e8071eda27dc3a17d325 *include/seqan/score.h
58db8b75c3d44aba29b2ecb0d6868650 *include/seqan/score/score_base.h
5eb8c4010a8a68e09df8950ee4fb3590 *include/seqan/score/score_edit.h
07e51b4fd9544add11d9d6935c1289f7 *include/seqan/score/score_matrix.h
546c65998e9af33d2d1d5b1d1495d30b *include/seqan/score/score_matrix_data.h
b91b3b6b40d1c902fbf034ab5b41bc5b *include/seqan/score/score_matrix_dyn.h
987a5e212a575b4bc95462733e7485a8 *include/seqan/score/score_matrix_io.h
bfc3e037e3140488e42ae3c428152e5f *include/seqan/score/score_simd_wrapper.h
c2927fc86b39ffc49f4985f278479073 *include/seqan/score/score_simple.h
8790280c5dc376327c26497bb6ab7891 *include/seqan/seeds.h
1120884653ba4e1883931679aa463c19 *include/seqan/seeds/banded_chain_alignment.h
4b000d04feb27e0880ae67f85cb026e7 *include/seqan/seeds/banded_chain_alignment_impl.h
9b67095560dbaad69789d7391344a9b1 *include/seqan/seeds/banded_chain_alignment_profile.h
0cf06129c38485cf5d2246f98241f64a *include/seqan/seeds/banded_chain_alignment_scout.h
a5d7442ecd1b7836011913a6a643e139 *include/seqan/seeds/banded_chain_alignment_traceback.h
87220276c3fa4e0b68a254a7546876ee *include/seqan/seeds/basic_iter_indirect.h
f77133ddd4e232d4064b025fa343fe79 *include/seqan/seeds/seeds_base.h
b26a3770c62ce614ce6fd304b0474c4a *include/seqan/seeds/seeds_combination.h
f6dd989016f9d096df0855beb2b92e0f *include/seqan/seeds/seeds_extension.h
bceb5d1fa7b34a616627d646a2fefd7e *include/seqan/seeds/seeds_global_chaining.h
e4c12f09f06f6838d5766c0482b6c9c7 *include/seqan/seeds/seeds_global_chaining_base.h
5416cafc4c7f8094bd580fa5d1ed10d8 *include/seqan/seeds/seeds_global_chaining_gusfield.h
26be42f8e4d69cfdf96bf97a824a773d *include/seqan/seeds/seeds_seed_base.h
bed0c7c89998cfc8d6467c0c18249586 *include/seqan/seeds/seeds_seed_chained.h
ee5fdf7824f9319a99e13de6603980e3 *include/seqan/seeds/seeds_seed_diagonal.h
fe43864fe5b23bf5d8e2f5aa5c220e2b *include/seqan/seeds/seeds_seed_set_base.h
d7092b34203d64b43e15af518d61d1e1 *include/seqan/seeds/seeds_seed_set_non_scored.h
88964eb1df84fe6acb439428d6c7a1d0 *include/seqan/seeds/seeds_seed_set_scored.h
18c6232d70f143a911d9455d9acec9da *include/seqan/seeds/seeds_seed_set_unordered.h
763c9de2f2b875b6846314cb6a155b04 *include/seqan/seeds/seeds_seed_simple.h
7c94e2a06f44dbd273948d6efcbbc94a *include/seqan/seq_io.h
ce7af2d306ec62f6027ca6667eebcf67 *include/seqan/seq_io/bam_sam.h
4440f33e901212863c83a0c6747c4825 *include/seqan/seq_io/fai_index.h
6e4d39401ad2ee6497614484e99deb14 *include/seqan/seq_io/fasta_fastq.h
f5238af222345b963032db6b9e7ac1d2 *include/seqan/seq_io/genomic_region.h
75ea76f32f70aeb73b7b491509fd7fcc *include/seqan/seq_io/read_embl.h
6753523691a8d28d08e4ded995eaa40b *include/seqan/seq_io/read_genbank.h
f5202644fac9b32a36b3dff527c5de79 *include/seqan/seq_io/sequence_file.h
cf91e53dcd960d9d7b8db4346b7ca5e9 *include/seqan/sequence.h
7a9e8181d3c5d33441c8cd109aab6d06 *include/seqan/sequence/adapt_array_pointer.h
e0473d6cb171a10acda3c2891729b636 *include/seqan/sequence/adapt_stl_container.h
de2da972e1f3cf36215cb072feeb9ab1 *include/seqan/sequence/container_view.h
2187f5bc903c79b16fd73321b39843ea *include/seqan/sequence/container_view_zip.h
024c2eb200a665aecae48f37d719ffdc *include/seqan/sequence/iter_concat_virtual.h
2be92bac3e172abb452fa865a14b1d0e *include/seqan/sequence/segment_base.h
4093cf7125e44c26b0aac347daa2917a *include/seqan/sequence/segment_infix.h
3bf09d1539b7eea17396be23b6f4b989 *include/seqan/sequence/segment_prefix.h
1217bd742080701899915731b7316c85 *include/seqan/sequence/segment_suffix.h
85e5f2451bf8294cb994a49a115bf32b *include/seqan/sequence/segment_utils.h
e2aae018eeb6425f37a641eaa00120b0 *include/seqan/sequence/sequence_concatenator.h
b71f32344f0bf247deb12085d19e9ea5 *include/seqan/sequence/sequence_forwards.h
d1eddd11ab9e1011f046bb834088f63c *include/seqan/sequence/sequence_interface.h
940e4ad71af4d96f827ff4f41e960d6a *include/seqan/sequence/sequence_lexical.h
f795fa94de2ec081b67a81ff4b761fd6 *include/seqan/sequence/sequence_shortcuts.h
b5e8a1032cf6c5bf1362c600e761c88a *include/seqan/sequence/string_alloc.h
56ae00258b4f849b51b2a8d903e0c911 *include/seqan/sequence/string_array.h
e782c81dd724baef0d0f5b8771d28037 *include/seqan/sequence/string_base.h
e1568eda37d25b188876ae9716f91507 *include/seqan/sequence/string_block.h
1d384d2fe1b7e39b838a3fa2848b40a4 *include/seqan/sequence/string_cstyle.h
5290e6690f8239c9a7da23f5023cf856 *include/seqan/sequence/string_packed.h
bbb5e7af2aadeb351b21036219185ed9 *include/seqan/sequence/string_packed_old.h
1f57c82c03c56bf9f89701ce4ab4703a *include/seqan/sequence/string_set_base.h
0b546e3734457fea053b101fefb1f5d5 *include/seqan/sequence/string_set_concat_direct.h
c6c49b2a4e451454a4d1cc35300b2b86 *include/seqan/sequence/string_set_dependent_generous.h
48946c5727995c1d95a4f4e0a5258ec2 *include/seqan/sequence/string_set_dependent_tight.h
b0217c707b73b9f7d93f4cff759b47ac *include/seqan/sequence/string_set_owner.h
62666a71d0208f7f0ac815374b3697a2 *include/seqan/sequence/string_set_segment.h
d3ea07b5765e0e27600252f9b50394c6 *include/seqan/sequence/string_set_view.h
20043214e314bd9f7f6c5133c658033f *include/seqan/sequence_journaled.h
a9444ce68041181f0379943ef9484e2d *include/seqan/sequence_journaled/journal_entries_sorted_array.h
c37342f4b1b8a092a92d4fd81470a7b7 *include/seqan/sequence_journaled/journal_entry.h
1f71b64efc4a820ab482bf12ee8cadf9 *include/seqan/sequence_journaled/sequence_journaled.h
2803f4abb581da7de59225c3fb69e15f *include/seqan/sequence_journaled/sequence_journaled_iterator.h
a95c6bca7f4e7046ebeac3e31c8307cc *include/seqan/sequence_journaled/sequence_journaled_iterator_fast.h
d9cf2789ccee3a05911bceb1cb3040e5 *include/seqan/simd.h
1d88099f46bf86998bc7f89f997ff5dd *include/seqan/simd/simd_base.h
9f5ba03af52d4e2c5ecded7f107df4ec *include/seqan/simd/simd_base_seqan_impl.h
152870a8d390ff9285be72c4fe28af41 *include/seqan/simd/simd_base_seqan_impl_avx2.h
45135547e611076d20877b0bf85e1df8 *include/seqan/simd/simd_base_seqan_impl_avx512.h
52eeeb8ddcf1c43729ab5bc76df156b6 *include/seqan/simd/simd_base_seqan_impl_sse4.2.h
584495e665076f142055b6b914bab970 *include/seqan/simd/simd_base_seqan_interface.h
a1326817036da038edb7fba07603bace *include/seqan/simd/simd_base_umesimd_impl.h
657e0c495915e0b2361535f7cdb429dd *include/seqan/simple_intervals_io.h
e98a2060e522f6cd6255a1d2eea15d44 *include/seqan/simple_intervals_io/simple_intervals_file.h
911bf09cb52659514b588f54849cb8f4 *include/seqan/simple_intervals_io/simple_intervals_io.h
f52bfa3bcdf921859a5cb82cc2256602 *include/seqan/statistics.h
801aa4ccc02e056ce56aff69ca9af56b *include/seqan/statistics/statistics_base.h
066cc72941774064317ef1f0afdc7af2 *include/seqan/statistics/statistics_markov_model.h
0d7d8663ef036edfaaca3bee5391795b *include/seqan/store.h
81d17232f0afec6a9f57fcad675e2718 *include/seqan/store/store_align.h
77ad45c28bdacfee9de22a685a92a11d *include/seqan/store/store_align_intervals.h
fb90b6c4c3f79d2e09ec7f98e105d42f *include/seqan/store/store_all.h
c5beb15ab3f91bcc81bb98a9f423667a *include/seqan/store/store_annotation.h
fe6fbc6350caa61b2a806593fda0ee2e *include/seqan/store/store_base.h
3ab740217d44df34c0e6b81854f266dc *include/seqan/store/store_contig.h
96b8eaf76f6770f9ec490a77e0ba2554 *include/seqan/store/store_intervaltree.h
b2ff8eacf337378794206976814940ff *include/seqan/store/store_io.h
60367824f953a64dccc2b3513b178c96 *include/seqan/store/store_io_gff.h
7318d798bc0361eeee9fb8a0cec40ed9 *include/seqan/store/store_io_sam.h
c4bcea61b7492e17437ff3f9f20be725 *include/seqan/store/store_io_ucsc.h
f9cdc976619f3b6412700c6e86b79f0a *include/seqan/store/store_library.h
7a7cbd6de5eb6e2485e3c1a8f110de89 *include/seqan/store/store_matepair.h
76d8746ab72cb3da8eb89cba2585a952 *include/seqan/store/store_read.h
6f6b549af8dc15a2b965564852b98de2 *include/seqan/stream.h
fb903605ef580755140cc7ec5fb4add4 *include/seqan/stream/adapt_ios.h
4e806226d55f052aff9499a5c8754062 *include/seqan/stream/buffered_stream.h
c8d3eef7a2708415ebe31f669593d885 *include/seqan/stream/file_stream.h
9e22fba5a066f2c263155dd65b8a9930 *include/seqan/stream/formatted_file.h
05b6cb2e4a6a7606aa9ac2c62eb8fb44 *include/seqan/stream/guess_format.h
13fbc8b825eb486045abe29bf7df0697 *include/seqan/stream/iostream_bgzf.h
cc46d27ad482f51ccfb6311ba5383dee *include/seqan/stream/iostream_bzip2.h
8e79cca009f9e9735658caaafbb126d6 *include/seqan/stream/iostream_bzip2_impl.h
9bbe6b1438f485bfd350b4a5950a2588 *include/seqan/stream/iostream_zip.h
861ec6661561d0ae6f3a9ad0c7778465 *include/seqan/stream/iostream_zip_impl.h
0f95fda52772c029ff9c616e31208929 *include/seqan/stream/iostream_zutil.h
a4af8edb9dcce198996e9d212c34be91 *include/seqan/stream/iter_stream.h
d8b14fececa4a64a488b0ef40bfca157 *include/seqan/stream/lexical_cast.h
1be11e7786571f018610ecb89e51f644 *include/seqan/stream/stream_base.h
cf742e64d391f6210adc26542a747f78 *include/seqan/stream/stream_compressor.h
3609b7af90bf8df8fbebb8f1b5d868bb *include/seqan/stream/tokenization.h
830e1e3b58de674ec12e263c6638e792 *include/seqan/stream/virtual_stream.h
57326d4fc2e3d069bc763b5fe25f49e0 *include/seqan/system.h
9b67114319e753fbb029c829987c881c *include/seqan/system/file_async.h
72102d7046a635c546e82e3456f8e41d *include/seqan/system/file_directory.h
97a5eb0a15468bb2cd9f34886e1daeaa *include/seqan/system/file_forwards.h
f1af59672a505b87738e0c52a0380518 *include/seqan/system/file_sync.h
abbdd10b38c764d8f52be8dae0088869 *include/seqan/system/system_base.h
e5366fe2c4e3bbf3841c47e0f7880a82 *include/seqan/system/system_event_win.h
3a0a71ed735e5db407f8047756432691 *include/seqan/system/system_forwards.h
f6c1de46f871e1e20e65699cecd0ae4b *include/seqan/tabix_io.h
4b3137ea44297fa9365a1fc9b63f18b7 *include/seqan/tabix_io/tabix_index_tbi.h
9f4980d2673132949c302e1318431d23 *include/seqan/translation.h
563c6c740d51af49c9466ba5dde7f731 *include/seqan/translation/translation.h
742a91b626228bfd2295a266b88a2da6 *include/seqan/translation/translation_tables.h
ed4d5f5e0c44fbb24f868c232676ad4f *include/seqan/ucsc_io.h
590cd31d8537c37b8bf439ded89d3bac *include/seqan/ucsc_io/ucsc_file.h
96d6050fc719b2185764f5697a824599 *include/seqan/ucsc_io/ucsc_io.h
6666d479024f3274346dae18d793fbe1 *include/seqan/ucsc_io/ucsc_record.h
798e18253e6df4e41573b22669237f6e *include/seqan/vcf_io.h
5308199ed4633b130e28b57b91617136 *include/seqan/vcf_io/read_vcf.h
52b5b53e37a004ffd4369ad1ad3458ac *include/seqan/vcf_io/vcf_file.h
46a6b0eebedd28d64eaf129a9dfc69d7 *include/seqan/vcf_io/vcf_header.h
348358806721fde3f047e9122a3dbc95 *include/seqan/vcf_io/vcf_header_record.h
d0052277494fa7557d3b94e944cccb46 *include/seqan/vcf_io/vcf_io_context.h
50ecd48bd64bd49a4646f7d4bd90aab1 *include/seqan/vcf_io/vcf_record.h
cd229deda0d4bf2cb9686f124e252703 *include/seqan/vcf_io/write_vcf.h
6ab25c986ef99a11c54b3922b4b7a704 *include/seqan/version.h
