Package: cytoviewer
Version: 1.13.1
Title: An interactive multi-channel image viewer for R
Description: This R package supports interactive visualization of
        multi-channel images and segmentation masks generated by
        imaging mass cytometry and other highly multiplexed imaging
        techniques using shiny. The cytoviewer interface is divided
        into image-level (Composite and Channels) and cell-level
        visualization (Masks). It allows users to overlay individual
        images with segmentation masks, integrates well with
        SingleCellExperiment and SpatialExperiment objects for metadata
        visualization and supports image downloads.
Authors@R: 
    c(person("Lasse", "Meyer", role = c("aut", "cre"), 
      email = "lasse.meyer@dqbm.uzh.ch",
      comment = c(ORCID = "0000-0002-1660-1199")),
      person("Nils", "Eling", role = c("aut"), 
      email = "nils.eling@dqbm.uzh.ch",
      comment = c(ORCID = "0000-0002-4711-1176")))
License: GPL-3
Imports: shiny, shinydashboard, utils, colourpicker, shinycssloaders,
        svgPanZoom, viridis, archive, grDevices, RColorBrewer, svglite,
        EBImage, methods, cytomapper, ggplot2, ggraph, tidygraph,
        rlang, SingleCellExperiment, SpatialExperiment, S4Vectors,
        SummarizedExperiment
Suggests: BiocStyle, knitr, rmarkdown, markdown, testthat
biocViews: ImmunoOncology, Software, SingleCell, OneChannel,
        TwoChannel, MultiChannel, Spatial, DataImport
VignetteBuilder: knitr
URL: https://github.com/BodenmillerGroup/cytoviewer
BugReports: https://github.com/BodenmillerGroup/cytoviewer/issues
RoxygenNote: 7.3.3
Encoding: UTF-8
Config/pak/sysreqs: cmake libfftw3-dev libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libgdal-dev gdal-bin
        libgeos-dev libglpk-dev make libharfbuzz-dev libmagick++-dev
        gsfonts libarchive-dev libicu-dev libjpeg-dev libpng-dev
        libtiff-dev libuv1-dev libxml2-dev libssl-dev libproj-dev
        libsqlite3-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-14 12:29:16 UTC
RemoteUrl: https://github.com/bioc/cytoviewer
RemoteRef: HEAD
RemoteSha: bdebb15c6cab8907c2bfc29a710c8775fb0db0a9
NeedsCompilation: no
Packaged: 2026-07-14 16:00:41 UTC; root
Author: Lasse Meyer [aut, cre] (ORCID: <https://orcid.org/0000-0002-1660-1199>),
  Nils Eling [aut] (ORCID: <https://orcid.org/0000-0002-4711-1176>)
Maintainer: Lasse Meyer <lasse.meyer@dqbm.uzh.ch>
Built: R 4.6.1; ; 2026-07-14 16:03:24 UTC; windows
