immLynx-package	immLynx-package
.assertSCObject	dot-assertSCObject
.deeptcrFeaturesToCells	dot-deeptcrFeaturesToCells
.extractChainSeqs	dot-extractChainSeqs
.isSCObject	dot-isSCObject
.symdelDegree	dot-symdelDegree
.symdelTripletsToEdges	dot-symdelTripletsToEdges
.writeCellColumn	dot-writeCellColumn
.writeObjMetadata	dot-writeObjMetadata
.writeReduction	dot-writeReduction
calculate.clustcr	calculate.clustcr
calculate.deepTCR	calculate.deepTCR
calculate.metaclonotypist	calculate.metaclonotypist
calculate.olga	calculate.olga
calculate.sonia	calculate.sonia
calculate.symdel	calculate.symdel
calculate.tcrDist	calculate.tcrDist
calculate_helpers	calculate_helpers
convertToTcrdist	convertToTcrdist
exportToScanpy	exportToScanpy
extractTCRdata	extractTCRdata
generateOLGA	generateOLGA
huggingModel	huggingModel
immLynx	immLynx-package
immLynx_example	immLynx_example
listScXpandModels	listScXpandModels
proteinEmbeddings	proteinEmbeddings
runClustTCR	runClustTCR
runDeepTCR	runDeepTCR
runEmbeddings	runEmbeddings
runHLAassociation	runHLAassociation
runMetaclonotypist	runMetaclonotypist
runOLGA	runOLGA
runScXpand	runScXpand
runSoNNia	runSoNNia
runSymdelNeighbors	runSymdelNeighbors
runTCRdist	runTCRdist
show,TCR_summary-method	TCR_summary-class
summarizeTCRrepertoire	summarizeTCRrepertoire
TCR_summary-class	TCR_summary-class
tokenizeSequences	tokenizeSequences
validateTCRdata	validateTCRdata
