16cd1d4f744f95dcce66bbf2e0ae2d0c *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
4f815dea6177339d0e3d0952f2007418 *NAMESPACE
c90657fa6f94055018a35f3c83e6f79a *NEWS
f8263e8b13799a27254b1d3715e27f2b *R/BEclear.R
4502b591a2ed8ee4ab4627e74e0db5ed *R/RcppExports.R
77be571d7ca7e2adcaa59a3b294f0ca5 *R/calcBatchEffects.R
c84fc1b8b567b00c1def83053de57051 *R/calcBatchEffectsForBatch.R
4e96bc48e1050d6efb3b21e761d7e107 *R/calcBlockFrame.R
c11fd7ef604328daaf74b13f5cea695b *R/calcPositions.R
c4966d20ad6644e908a1bcb90122ee5f *R/calcScore.R
b9d68482919eab523ed741500d6ea08c *R/calcSummary.R
6600d777a4ca47787b2957af4a822df8 *R/clearBEgenes.R
8eb4105c4a437bba0eb65a4c07f04294 *R/combineBlocks.R
5f12b1bb9a1132a593d500a6ac5625ac *R/correctBatchEffect.R
49711fbbff04a5abe2aa341486655d5a *R/countValuesToPredict.R
11f97cade18cdf4d186be6e9a712c01f *R/findOutsideValues.R
ef2f0cbc7287fffa8ac43cfa7ddc1ecb *R/gdepoch.R
d7e011822fff9c84db6e8cedab8b2dc9 *R/imputeMissingData.R
ec24eacc66caf86daab697b4d2deeb22 *R/imputeMissingDataForBlock.R
9b75b697c187f916c932345fe4443e94 *R/loss.R
a2855a825dcfafe1c4bf94e355c64af8 *R/makeBoxplot.R
9fdd825ad70b55c1697dd8bad05226c3 *R/preprocessBEclear.R
a91286d102bb67a5ef6e4037e8d70bf7 *R/replaceOutsideValues.R
5f84916a1869ecea504d5aa666def387 *R/runGradientDescent.R
924a30ec30db3b77c4325509ab67c659 *README.md
c898f2bacd0ce0b7c44da54d1c2d65c6 *build/partial.rdb
29aefebeee67fe8b48c3056d3351da6b *build/vignette.rds
8dcbaafa17a6370582abdc66fc2a7889 *data/BEclearCorrected.RData
9c8c480319653b3c2bc59eb42b982d5a *data/BEclearData.RData
1cf1e3dd95e9a2c07f99ce6bf953168b *inst/CITATION
7d56d2a9fe4b3e976a6f4a40d02bc910 *inst/REFERENCES.bib
745a6aaa62827107eae7758732693485 *inst/doc/BEclear.R
27db74cfc4b746cf6cd907f8c245e6aa *inst/doc/BEclear.Rmd
39a9f69328d3a4c88ec84da9c6f9697c *inst/doc/BEclear.html
7f72f96ecc6863b6ae3a91bcc794826e *man/BEclear-example-methylation-data.Rd
53d39bd38ff65e0f80831a99f11cd090 *man/BEclear-example-sample-data.Rd
b9e61e91fe09c4a6c6ba82a7ebdde6d3 *man/BEclear-package.Rd
4daddaf7f7949ab3e5a715fa158b2c1a *man/calcBatchEffects.Rd
6ef329aa2c50aa9fb94b9c9a17c429c8 *man/calcBatchEffectsForBatch.Rd
2dd1abc703a3dbe4797366df678b0128 *man/calcBlockFrame.Rd
071ef7da69e3158c2e8868b743b202da *man/calcPositions.Rd
a2d5e6f1674c808a07158a7cb8579a6b *man/calcScore.Rd
0be63e386064ec8d7c19139b6b3d64ac *man/calcSummary.Rd
6893acbdfc2151efa0c3c8a444e9d3f3 *man/clearBEgenes.Rd
2add74d8653dc39f0e34fea5de5dbbcf *man/combineBlocks.Rd
34c80e4763d5dda054971ea8a7cb3444 *man/correctBatchEffect.Rd
eefcadef8e4a16788cb244ce289ac600 *man/countValuesToPredict.Rd
1a114b5faa07f416790176720e31b659 *man/ex.corrected.data.Rd
66f297140d6ce34780c00d9b105d5f74 *man/findOutsideValues.Rd
3393365e61aec2151f35ed35533ab042 *man/gdepoch.Rd
dcad7049f5a8b0a27ab11ccb2399fba1 *man/imputeMissingData.Rd
cfde07ccb0f30e27111ddeb18a9dbfce *man/imputeMissingDataForBlock.Rd
f894cee927aeef8a8eef9a8d393d120a *man/localLoss.Rd
82cfc219efb2e3dc98e6c6083ed3351f *man/loss.Rd
d414bd2f9be0df50a13b80e305a540c2 *man/makeBoxplot.Rd
513a96849720641227300711750d9cbc *man/preprocessBEclear.Rd
08ba4db211cf8e64c7d12ca805f685d3 *man/replaceOutsideValues.Rd
2ac0f97072da9a463170be61dfde5ce1 *man/runGradientDescent.Rd
2db38da7bdc2530188079c883d555d42 *src/RcppExports.cpp
646d108ff007712b2e3fb506c253b535 *src/localLoss.cpp
6106b9017f045ea65005c1a08d4e54b8 *tests/testthat.R
99631032d15675bb3c5c45b21de1c9a5 *tests/testthat/test_calcBatchEffects.R
afc38bf1e73e577de56d77af335bb89d *tests/testthat/test_calcBatchEffectsForBatch.R
54a9fb542217921eb7c07074be2d7175 *tests/testthat/test_calcBlockFrame.R
4ca279a85cb95966679a6558ed30e8c4 *tests/testthat/test_calcPositions.R
df1fbfe8bb75d8d2c86241d084fb347b *tests/testthat/test_calcScore.R
d30dcd0fc56ab220a60b5c03ca67e97e *tests/testthat/test_calcSummary.R
4b4af42c17844226be1fc77fd31d1b10 *tests/testthat/test_correctBatchEffect.R
4717df105ab4a887bd9b48039d54fcc8 *tests/testthat/test_findOutsideValues.R
38eef96d1c089db38288b780d8035945 *tests/testthat/test_gdepoch.R
2664ab2819dac5e1e329661ddf16501d *tests/testthat/test_imputeMissingData.R
3da71d514dbac06c3bc89e494a281ea3 *tests/testthat/test_localLoss.R
31da31aa9a2896e220d1a5234c7ce6ab *tests/testthat/test_loss.R
0643543dd32d00196b97f9e4e625e0d5 *tests/testthat/test_replaceOutsideValues.R
affbf48fe99911cce76f2837df614db8 *tests/testthat/test_runGradientDescent.R
27db74cfc4b746cf6cd907f8c245e6aa *vignettes/BEclear.Rmd
