21880a9a574090b8750641ba5cf38d3b *DESCRIPTION
2ee27fbf932c5dd40032925b29bc0106 *LICENSE
6820ea70f0130c34f6c51541da085215 *NAMESPACE
87ff0cb426701b952a4a6624dc7139b0 *NEWS.md
7569eb9da299d2a10090b8be5986e6e3 *R/annotateProteinInfoFromIndra.R
3982341437be42b918fad605f8dd6cde *R/bootstrapTopicModels.R
7081ea0fba655f770bb04f1f4553128c *R/compareTopicModels.R
5abaee5d4574297a5757f29e483ba936 *R/cytoscapeNetwork.R
da52804adb3992bfca53ab84b92acb35 *R/decomposeSubnetworkByTopic.R
2aef232a64bf0c80402f0225b201aafb *R/deleteEdgeFromNetwork.R
67210c1e7ab738414b6855734790dc27 *R/exportNetworkToHTML.R
7dccba4aae1d0fb7faffe9e96a32866a *R/filterSubnetworkByContext.R
713e53e9ff392bcd1bea69aed063d1d7 *R/getSubnetworkFromIndra.R
15a65c5b0a05937ce1a44d6a3ada6a02 *R/utils_annotateProteinInfoFromIndra.R
6da262458a058221f81195783e33c998 *R/utils_cytoscapeNetwork.R
9712b9c8671affb65588a5f872fb6e75 *R/utils_decomposeSubnetworkByTopic.R
e21cedbc52540884249836ffc07df278 *R/utils_getSubnetworkFromIndra.R
87a56ab43f2c9600bbeac7bfdc44551f *README.md
99146f20879ab25697e45555879c3132 *build/vignette.rds
f010b916c964af72ae008c2f971102af *inst/doc/Cytoscape-Visualization.R
a68459d00a7a8b8d0907386606eb7c49 *inst/doc/Cytoscape-Visualization.Rmd
8a3957b99f98f0abee760f206e0ea24c *inst/doc/Cytoscape-Visualization.html
2c617999cd6df8e37d4dc98c96f41788 *inst/doc/Filter-By-Context.R
7250437ef412f12b540b0daba4515872 *inst/doc/Filter-By-Context.Rmd
d7e9a33aaf279196f98febdd78cdec37 *inst/doc/Filter-By-Context.html
85c0a9155ab59176c874edf3aea6849c *inst/doc/MSstatsBioNet.R
989c905baa9eb3f4c054b0421db96761 *inst/doc/MSstatsBioNet.Rmd
175bcc41bee33ffe4dbaa53a4ca6ed7f *inst/doc/MSstatsBioNet.html
e63830ee93cf1e2b0a14968fbbfdeaad *inst/doc/PTM-Analysis.R
f6fa3da38bdd059595500d083e2b6161 *inst/doc/PTM-Analysis.Rmd
859d42131725e267ada3df0b91487b90 *inst/doc/PTM-Analysis.html
a631f702a4b68a32a1d5af4b4f8d4c80 *inst/extdata/garrido-2024.csv
e28c5040ae57c4d8692d6b6f8f0432d5 *inst/extdata/groupComparisonModel.csv
999bf313a1363f77131014db01b6e4fe *inst/extdata/groupComparisonModel_compound.csv
fd832d3b93a52e1f49652ec92bb13e91 *inst/extdata/indraResponse.rds
4233173aa8d89f3c728a7b16429fc73a *inst/extdata/msstats.csv
ee7580600378deb0fb0306a37197b373 *inst/extdata/subnetwork.rds
56296b93e707489c0ca0339b42d98442 *inst/htmlwidgets/cytoscapeNetwork.js
bb8b36675eb248c6a5be9a1e426d7147 *inst/htmlwidgets/cytoscapeNetwork.yaml
9ecdf9ec77f8f09e344d199cb7e6c9f0 *inst/script/groupComparisonModel.R
de41538202cbf898e7d53d71e18935f4 *man/annotateProteinInfoFromIndra.Rd
e500c5ce3d6f961d62420d804195cab9 *man/bootstrapTopicModels.Rd
45355f2bab82fc7117e13ac8214570e3 *man/compareTopicModels.Rd
c45ef61fdfb682cbef29ed9863f731fd *man/cytoscapeNetwork.Rd
add9db474e9ec31ed5ef0e20993f7f47 *man/cytoscapeNetworkOutput.Rd
b759a3f3444790fcef1e9bd34d3a1d13 *man/decomposeSubnetworkByTopic.Rd
0088ac19e880b74df39ab2d2c35fd92e *man/deleteEdgeFromNetwork.Rd
6b4f2622de6d11e1b57dbded1c28a94c *man/dot-populateEntityInformationInDataFrame.Rd
df4e64b83dde76f99334562f86e9da56 *man/dot-populateEntityInformationWithGilda.Rd
a9ca08cd92fe8aaa1931c497fb572210 *man/dot-populateEntityInformationWithIndraCogex.Rd
30613c5705a689d28ecde0d9c173f3ba *man/dot-populateKinaseInfoInDataFrame.Rd
8d41348e4005bf53071906ea05078130 *man/dot-populatePhophataseInfoInDataFrame.Rd
b67f46b88aece9de60892153cde361d7 *man/dot-populateTranscriptionFactorInfoInDataFrame.Rd
d2716ec397c85d1de123d8ab817f1caf *man/dot-populateUniprotIdsInDataFrame.Rd
89845a7232d95b910b762d603187ff4f *man/dot-validateAnnotateProteinInfoFromIndraInput.Rd
f723e550069a0b6ed297085a956f554e *man/exportNetworkToHTML.Rd
28f95b68cb59e3fe671d6a05a5fff2f2 *man/filterSubnetworkByContext.Rd
d0c8f72a3fd228fc55498c587c3178b3 *man/getSubnetworkFromIndra.Rd
74588a1a1c9f67ca3c9d880ce01c50c3 *man/previewNetworkInBrowser.Rd
e670109b0599e4f53392c8bdf8842889 *man/renderCytoscapeNetwork.Rd
00ee37784a6e02f6896039ef2479b92f *tests/testthat.R
956d1ad1020f093d4d853fe49c725196 *tests/testthat/test-annotateProteinInfoFromIndra.R
a06639b0fb6907db6ead498f98f9de22 *tests/testthat/test-exportNetworkToHTML.R
9413284337bda55b91331e96a401890a *tests/testthat/test-filterSubnetworkByContext.R
7607ae84b84d015aae4e92466642b4b3 *tests/testthat/test-getSubnetworkFromIndra.R
a9baab44cfbe260feabf04ba4e5f094d *tests/testthat/test-multi-grounding.R
799365a5837e4a1825e0df625163de45 *tests/testthat/test-utils_annotateProteinInfoFromIndra.R.R
23ca29db79e241ed2476f3ae1e61dbc9 *tests/testthat/test-utils_cytoscapeNetwork.R
7d90d5c78d8c05d70990de67c47e7a08 *tests/testthat/test-utils_getSubnetworkFromIndra.R
a68459d00a7a8b8d0907386606eb7c49 *vignettes/Cytoscape-Visualization.Rmd
7250437ef412f12b540b0daba4515872 *vignettes/Filter-By-Context.Rmd
989c905baa9eb3f4c054b0421db96761 *vignettes/MSstatsBioNet.Rmd
f6fa3da38bdd059595500d083e2b6161 *vignettes/PTM-Analysis.Rmd
