166d086b8c9923ad11ef7176d9dbd61d *DESCRIPTION
6112f6e9f83857fe7e7443380d419f8f *LICENSE
a0c6019365bde3cea877cb80e8ca5d57 *NAMESPACE
bb04667d1a61c047d8fe9be30971c9bb *NEWS
b06df0985e64f1d79d2a1f12534724f0 *R/addCustomReaction.R
509cf56beea44398180744119b2bf9dc *R/annotateKoClass.R
086ed88e1318ab97ccdfe9b528f73105 *R/annotateOrigin.R
5642374ac3da741b35084be498254027 *R/buildCompoundEgoNetwork.R
6a886e81ecac3f30b7b771b250dbe4b1 *R/buildCrossSpeciesNetwork.R
b5b5692846570b55397105b48b7033cc *R/buildEgoNetwork.R
ce6c07ba8c00282e16e42c0f4495222b *R/buildKeggNetwork.R
41516b33f6e1c5abfe0548606be8e0fc *R/clusterNetwork.R
31222523288e8c984e62928ef67e7d96 *R/convertGene.R
ce79ad4a08711132e99142db9bd34dc4 *R/data-MetaPathNet_example_network.R
66da173c68e5ff351da2a7b15e4a9664 *R/enrichPathway.R
c95a5bc5c9ced1c0ce558a6c7dc68107 *R/enrichmentDotPlot.R
c7c8dc160197348f3f7eca444e545773 *R/findKeggIDs.R
6566c04bf8ae00ebc64d4d3cbcdccb8c *R/findShortestPaths.R
0bc1d84f987aed8229f4924288a4d63f *R/getPathIDs.R
1ebf3ac9a87d4ca870f3168a79e3744c *R/keggNetwork_helpers.R
e7fdd7303a1960450706b674b5123888 *R/mapReaction.R
e9f57ee0f72f6ffe581f9b15e1fd5296 *R/networkDistances.R
459ce6108fb9515068fcfed7a0cee1ca *R/networkSimilarity.R
cabc8c3e3c89be1ddf04d82b30ba4fb2 *R/network_utils.R
53e0fb1d8dc9f38cf8fab4b5e1069fe2 *R/permutePaths.R
86104c847e61034fc3bf9f5c404bc6ad *R/suggestEntities.R
ab6e2381b621b5eb368d34d0393e54ae *R/viewClusterCy.R
b9e1ad7999e4c0d376d165737b1423d0 *R/viewNetworkCy.R
65fce70841bd7f1f3aaaee2a6581baab *R/viewNetworkR.R
f8b2634a20806471094b565dc75e2592 *R/zzz-globalVariables.R
21c9401b8c07f38d762ade4612fc4ffe *build/partial.rdb
86d6c7ad42e01c89836b36d1784985f3 *build/vignette.rds
56a4ebe4137bec2f02f809e34a12e1a9 *data/MetaPathNet_example_network.rda
d5ab3974f825596d15b520154c0e47e7 *inst/doc/MetaPathNet-choline-TMA-TMAO.R
e68ed9e19bfd50ec105a5668cb201cec *inst/doc/MetaPathNet-choline-TMA-TMAO.Rmd
76fa2267f4391f435037d43eeb8c8a62 *inst/doc/MetaPathNet-choline-TMA-TMAO.html
b0694f8dcd8f779d1eb44d025d6b12d2 *inst/extdata/network_hostMicrobe.rds
09baf177af3662af5e7b0f867d661b7e *inst/extdata/tma_integrated_network.png
f12d5d483794ed11cf13453fcdd76635 *inst/extdata/tma_shortestPath_network.png
c9df2e8993d5823e68cedbc4ba5d83d2 *inst/scripts/make-network_hostMicrobe.R
cc55f461f9ee863e2e0c8fdf54b6175a *inst/scripts/make-tma_integrated_network.R
da646c94fb5e621f32bfb71f78be3775 *inst/scripts/make-tma_shortestPath_network.R
1550727993a370f1733467cf0e031aee *man/MetaPathNet_example_network.Rd
60ef06722b07b4b43f4a6720e88e0970 *man/addCustomReaction.Rd
f9e315831b04e0861ea49a938a523510 *man/annotateKoClass.Rd
34af5d7b3a2b839a277032519fc44456 *man/annotateOrigin.Rd
2dc47fba87ed12b1c9ea9d6161657f2d *man/buildCompoundEgoNetwork.Rd
96376c16ae460d624309c7beac868f0e *man/buildCrossSpeciesNetwork.Rd
6e1b78b1a023aca93b97055aadab4193 *man/buildEgoNetwork.Rd
ede6942285e2b2d3e724683eb1c955ee *man/buildKeggNetwork.Rd
6385d98480e0e92d3cc89a3a8171337c *man/clusterNetwork.Rd
d716e8bd010b46450234bb09b1fc7c23 *man/combineNetworks.Rd
bf9d5a65709a8957a2cbba58cdebeef4 *man/convertGene.Rd
8d8da3d7cf2142a47f1104f49300bf1b *man/enrichPathway.Rd
b0bf00b24db5d1cdec3f071097e38f45 *man/enrichmentDotPlot.Rd
872160f659a479ce8cbd6e59de153452 *man/findKeggIDs.Rd
695e88c51553be277990844bd84c77e6 *man/findMappedNodes.Rd
bd49188ee67535f8de945c956e293fbd *man/findShortestPaths.Rd
c1b8d18b1f1303ef5f1b5c88e678b774 *man/getPathIDs.Rd
e019d7f34c6e2ef05513e81071894ddc *man/mapReaction.Rd
f5314ed010cfd555bd3f0508be6bc9b6 *man/networkDistances.Rd
efe99e7b28b061086ea2a706826a285e *man/networkSimilarity.Rd
460922614579b9b07eba9b2af43057f3 *man/network_utils.Rd
df8c1cf9dcdac8f0260dc83508083c4c *man/permutePaths.Rd
49b0a884b5f469d437d7a9aeb55731c1 *man/removeDrugs.Rd
a9cdb5a4bcc05b9cf14a421b832c7ca1 *man/removeNetworkNodes.Rd
335008fa02963730ba0d02adf18ef7b6 *man/replaceNode.Rd
bd1f68b59d640f9f5d889bf1de782f5c *man/suggestEntities.Rd
17a4fa4368142190688c060668a6938a *man/viewClusterCy.Rd
211e700c62d17699cef553c3004d6ca9 *man/viewNetworkCy.Rd
c58e88eb245eb26c00101a212bd81d2f *man/viewNetworkR.Rd
07075b1bf0dd0408790dcce5cbc41a6f *tests/testthat.R
66d37433bd14c9fd825a6ef76fd9a5d8 *tests/testthat/test-custom-reaction.R
1e706cb954a22feeffd75005e176a87d *tests/testthat/test-network-similarity.R
f7e22fa8b5402ba4768c9ec986591711 *tests/testthat/test-network-utils.R
e68ed9e19bfd50ec105a5668cb201cec *vignettes/MetaPathNet-choline-TMA-TMAO.Rmd
38b996b9a6e7ed56aecf6c137029b5de *vignettes/references_TMA.bib
