c51c5d3139829eaafa4454baff7617d8 *DESCRIPTION
6f8e16a3e13b6c4c6ae1fd898e68fa4a *NAMESPACE
89b12490dff9d5af73b6339bcee5a440 *NEWS.md
d4723d039a9909dd2c105f7013780434 *R/DE_between_group.R
f0572ce196aed7965aecffe73307bd3d *R/DE_between_time.R
e5403e1b5c63364ce686625a20b639a8 *R/TiDEomics-package.R
3fffc3e62969bf0b1f854555f92ed084 *R/WGCNA_input.R
7350736c90f05594e39ca9b9108c8d98 *R/WGCNA_module.R
bb9b3952ed5e185c24b75eed22c123ed *R/anno_multicol_textbox.R
a1553062fb8c61d58d3e4c63f75c520b *R/calc_feature_property.R
a613d88ceb5ff07d5f887769c9b927e6 *R/calc_mean_sd.R
6dfbc8f2ea781630f7c57e75573b2bf2 *R/check_inputs.R
a9f1bea0e6df23d5b9a5c630cc73744c *R/create_input.R
bdc87f5095254d82e37916a31c6ac519 *R/data.R
b8cae03d1b87a2409ab40231fb6749e3 *R/decomp_variance.R
67816f11aabac2afedcfc3b5c049574e *R/enrichGO_list.R
af01b711e4b74cb1a7611c725a6e1e1b *R/enrichGO_rank.R
be6c90780009de1e68029b97dc761395 *R/enrichR_list.R
b7fd0bbe199ab95ec89f7285a91cb2ed *R/enrich_msigdb.R
4de0af1e2ae794709afa02bf000808f3 *R/enrich_utils.R
3d19577b67662a50742ed42a35f50ece *R/extract_hubs.R
605b635ec7d8bc2dd891491efe476d0f *R/extract_segment_trends.R
84140cb8acb4ac3823f43e10f307699c *R/flatten_DE.R
2044357f68d8e3e5802e748d9fc3c992 *R/flatten_enrich.R
2cffb3a3feb1ffaad8bdb1df4e33e15a *R/global.R
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5bc4c3a47cdf4874c862d7129317f28a *R/impute_groups.R
6324c88e011efdd5b81adf730765ea76 *R/merge_groups.R
459344b8fddd2eefe59933a1050b9a63 *R/merge_replicates.R
959b6cd594a171ffe277b3009b473d72 *R/normalise_to_start.R
5843f5fc6fee99ccde40ab59a5781a47 *R/palette.R
b3772cba86c60dbfc679dc5dcba8bc42 *R/plot_DE_between_group.R
40e1c1387caf2455586345d0932278fd *R/plot_DE_between_time.R
24eb32541e789b136a4d3fd05404869f *R/plot_GO.R
86be9ae122c0d83a58f6aaec01094f27 *R/plot_ID.R
dc47d0b6401ab4d2e0ea5299765beb14 *R/plot_WGCNA.R
3ac33741ad114bae8a6777e7fc0953c6 *R/plot_breakpoints.R
2c85e13171dba5c9e5b980f50d83cc09 *R/plot_cor_matrix.R
903be9a206abcf537ed982d6764bfeb7 *R/plot_cv.R
694d78378ef9be560c0b8bc6a8bb27e8 *R/plot_distribution.R
bc8274c292675688be3c255eee823c43 *R/plot_missing.R
af12f3bd09e3cbfadb3fdeda4c404990 *R/plot_modules_h.R
c61a97d6111139d6e6f15aff2c8c1e8f *R/plot_modules_input.R
ab00a109b13261ae4f9cb4ac1ba7972d *R/plot_modules_v.R
99492784da1b279c17618627bab1cb8a *R/plot_pca.R
f0bc9de11ea8402491a073bbe776f838 *R/plot_pca_3D.R
07e3c336e2f47edc58bfdb80dc350f82 *R/plot_pca_by_group.R
964e28bc3fbf5fd14b04fcad11507426 *R/plot_segments.R
38c4eb2fccde392193e0cf00ca86328a *R/plot_trend.R
02c22be601dc60fa80610e0e9c256947 *R/plot_umap.R
dd6d99224f3fbe4e0577003e9e91ba92 *R/plot_umap_by_group.R
858a3923ad01d8e9828764346273b292 *R/plot_variance.R
5a2237bf83d769be098f832da52d57f0 *R/plot_volcano.R
095887a9308ee91f18fc51ea91735289 *R/prepare_WGCNA.R
f77573e0f6260da6939de2ac123a917b *R/prepare_tide.R
b3abe0fdf572c9a911c0ed298fa851e3 *R/run_Trendy.R
1d3ece89e03331921d1dd6f3d99deba3 *R/run_WGCNA.R
2d167866686c2a988ed39eee2a99c2d8 *R/split_groups.R
2e49ac3284ba1c4b78e1fb59b2a7dc15 *R/summarise_Trendy.R
fd18908c369f84999aa3213269430afc *R/summarise_feature_property.R
f6a7fcb539f2ef752feda8e76baaedda *R/summarise_module_metrics.R
b830002fe59b4dfa951f2c6400afc971 *R/summarise_module_pattern.R
1952a13f3aee45f590688257fbaba6af *README.md
81acdcf83b5b1384bae5402991c22d0d *build/vignette.rds
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ec5507381ddd045a8bca2e5657179602 *man/get_custom_palette.Rd
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99793a8d20faacc0192f9153b3698cf1 *man/plot_DE_between_group.Rd
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1dabd8c9a49db2e7a7446c61d9919918 *man/plot_modules_v.Rd
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c0b10a46913017a8f474c9b5cda5c314 *man/prepare_WGCNA.Rd
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6eea8a10e0f86facf64dc766882f3ff1 *man/run_Trendy.Rd
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3b2e4d0c5d53e16e6d22daa6cfbb1bf1 *man/split_groups.Rd
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5dd082b97bf05f75568b0a2bebc90bd0 *man/tutorial_data.Rd
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00762064551ca88672c5a446a3b5e657 *tests/testthat/test_validation.R
f662ecdf6b94f44817533cd383bafd75 *vignettes/TiDEomics.Rmd
3c39445930d63a4b8a3aeb5349fb096b *vignettes/references.bib
