e46a9ec0eae616ae59a7acb92122c46e *DESCRIPTION
20ebcd14da937d6e20595fd916d8e0d5 *NAMESPACE
5525718ff8e20cc1d2d6d1a7c41882f6 *R/daVis-common-args.R
47f7c70695ea81980f19035413793ee9 *R/plots-MAplot.R
617598947341fabc5d842e9d7f02d217 *R/plots-genesBarplot.R
085bd3b92f92dc7f1b48d2dc7b3891e5 *R/plots-heatmap.R
e41c0f92fb7dc27047f458a68330a664 *R/plots-logRatioPlot.R
ecb7646508bc5f3972a75387dba44eb2 *R/plots-scatterPlot.R
b88e0fdab1d4a0bc990dc1588e5c4e1e *R/plots-upsetPlot.R
4495febdec3559c6ae63fe4a6d046d59 *R/plots-volcanoPlot.R
e2f9044bbb68671e27703b4e5f8f7b0c *R/plots-waterfallPlot.R
6a85e94c57f2dcf7bd1b5d0615967bb5 *R/utils-checkCoefficients.R
da42d7e7520435caaaf0e146fbd0f470 *R/utils-checkInput.R
35092571d254f74fc37b357dbd868831 *R/utils-checkInputColumns.R
b6675dd64f61a651669ac8aca2f99c13 *R/utils-exampleData.R
e64a58d6cca6c1abe239717089613d51 *R/utils-getFeatures.R
450ed4ee9ff98bc29b7758d77e321596 *R/utils-plotTheme.R
beab44646ddcb7a5cfc69d14fff4a60c *R/utils-plot_functions.R
9b4cc38c3b5d0f5a2aac2934e5e4f891 *R/utils-topTables_arrange.R
a8ab9717c7d795575e4a143447c183bf *R/utils-topTables_extract.R
01c7076994b932d19abb754e618d13e8 *README.md
5d9d74db21f2af2b9f2e313310d11296 *build/vignette.rds
25db920191bf18bc7e31ccf2f9d8fbbe *inst/NEWS
95eba5353e6af1f02fc56261315616a7 *inst/doc/daVis-vignette.R
ea128a97b9b6c4aa65996d4c5df7d873 *inst/doc/daVis-vignette.Rmd
0460783e9eadcfac16f060008ca9e7c5 *inst/doc/daVis-vignette.html
49a8531ad2d7417d978f6f3bdc0c44f4 *man/addHoverText.Rd
df75f391b8a76db711a8ba2f07a1def7 *man/arrangeTopTables.Rd
f9826c1f3114f2bbb4fda5b0d05240f2 *man/calcCorrelation.Rd
43618ec473068859bb839a0b6f55eba7 *man/callBarplot.Rd
33cde24f1c1e74f1f36c9cd2c08d08e7 *man/callHeatmap.Rd
eb7714a324d36276533dd6a31a663421 *man/callLogRatioPlot.Rd
10764ad11411df23029dc52214c1831c *man/callMAplot.Rd
90246dacf0c80320c405ed5a8a373b96 *man/callScatterPlot.Rd
7ea9d4068a4a549d5f4402a56e240fcc *man/callVolcanoPlot.Rd
4881f415f6d03c9135754e118e4d4d42 *man/callWaterfallPlot.Rd
4cbfd8adcd83603063cde3894f1b1a19 *man/cbindFill.Rd
462cb3dc001e097b6990c654171a4a69 *man/checkCoef.Rd
904a776f3b7f842f59d619aea2a2709d *man/checkColumns.Rd
6032407893db8e9859ae11ec23520026 *man/checkInput.Rd
d3cfe2345b7264e817a4d9388ae73eb2 *man/colorBlindPalette.Rd
287814dc52f7a467f13d8cc5fc90984c *man/concatenateVars.Rd
e5db06aabf622e738ad8c521c057d37b *man/createDataBarplot.Rd
f9f869023564482cbd33b015c73b020e *man/createDataHeatmap.Rd
48698e35ee20cd02c6f0766f3c98521b *man/createDataLogRatioPlot.Rd
c22a3ca634736e737fcbf1c49b5d389c *man/createDataMAplot.Rd
d3c98b8bcb3052c151f3efc7e133d19a *man/createDataScatterPlot.Rd
4eca2b8b34dd241f2100f2468a1f5ad8 *man/createDataUpsetPlot.Rd
3ec2190d1b68a9e406871b39b0a404a9 *man/createDataVolcanoPlot.Rd
381d31accc6303ff1075ac65434f8e1b *man/createDataWaterfallPlot.Rd
c06d2e057976b30ac4cd29e39b46ea72 *man/createExampleData.Rd
74ae73fd6f39d5b07749219a9f0bd7df *man/createExpressionSet.Rd
c05596c0247a3d16a37f13c0eedf7627 *man/createPairData.Rd
779e3b3371f576d5ba79dee72ade5984 *man/createSampleAnnotation.Rd
b22f40a77019c3215f608af92557d089 *man/createTopTableGenesOfInterest.Rd
33248becba78ef37809f188a61754641 *man/daHeatmapLogFC.Rd
2976d0220fa4d7bc9789d6df48cae8b6 *man/daLogRatioPlot.Rd
a728c07c31ba9651b0e19d158e4014f0 *man/daMAplot.Rd
7bb2fd80ffeb2d6c6b840a186bdcb34b *man/daScatterPlot.Rd
92f588e81f6e261df003bb4bd46c95e1 *man/daSignificantGenesBarplot.Rd
25bc827fd6a27808540ff5df400c6c24 *man/daUpset.Rd
019c75d366d603a17afe05f56c5a5c96 *man/daVis-common-args.Rd
434be79a693a3140ad47c502986c092d *man/daVis-common-doc.Rd
0858fb96a95d6b49602b638af2301ae4 *man/daVolcanoPlot.Rd
455c49fcf17753af2a9045fad9908851 *man/daWaterfallPlot.Rd
c9c1a02bdf1c9af7853f61792d803207 *man/downloadData.Rd
98ffec8f57c9d92c28d550eea89e3710 *man/extractColsOfInterest.Rd
81d5384fd691b0b07ada1b1ef370d8ca *man/extractFeatures.Rd
1d92353fd8e2719ea013489594259bc5 *man/extractPairs.Rd
409c9944ab3c724d8c3ae4eed142ac15 *man/extractQueryList.Rd
c0a7892b36b06370ac9b611799c5633f *man/extractTTcoef.Rd
e13794bef03cc6d4d15bbd2ccd4760a6 *man/extractTopTables.Rd
5206f7941ba829d19a679f152ad746c4 *man/facet.Rd
21f78843200dcf944597dd7efd50813c *man/figures/01_volcanoplot.png
2a1d34ad1906ec4de813deccb1004785 *man/figures/02_logratioplot.png
3531725d496caaaac9ebff9d72c063df *man/figures/03_heatmap.png
243f32bb58d7341b2811d2a0381709cd *man/figures/04_upset.png
09ce622c4e8bab02d1687de439ab000e *man/figures/05_scatterplot.png
df80e8f83b07c65664ebb082829e2cb7 *man/figures/06_waterfallplot.png
8bcfb717f7d37ecb74b506d1c667720f *man/figures/07_maplot.png
00312344ed9bee9ed909508280c2f501 *man/figures/08_barplot.png
5451f1f13c7d4a93e337b20021c7b316 *man/filterCommonFeatures.Rd
ae09ed842f09c160fb1b049c039f7e27 *man/filterGenesOfInterest.Rd
e813241944d03d1c1e42a3676dfc4b4d *man/filterLogFC.Rd
9d7acc9b25ea627a20951fedfc0a8f33 *man/formatAesMA.Rd
0f970a660acb18cd713b8de1c1940af7 *man/formatAesVP.Rd
5d86968418ed509a84d5af82c5680859 *man/formatAesWP.Rd
0bd70cf371130d3da4e12cd8a3e7988d *man/formatManualScale.Rd
d395377cecb5cbe814ecf8ef2c9c6e4e *man/formatTTcoef.Rd
53e3cf8a8c8fe9587e619b423ee023ac *man/formatVariableLength.Rd
158d949487a6184a63098ae1c0ac4f0d *man/formatVariableSpace.Rd
327c11aceb64608cd680118e37604708 *man/getCoefColor.Rd
584eb80028a932551efd1ab7f8a3d25e *man/getCoefLabel.Rd
3644b491b3604fd183f4db10044d901c *man/getFeatureColor.Rd
4ec98db1264277fdc5336184e43e18f3 *man/getFeatures.Rd
72ab4ee29b5cec26f0652f6173a2d417 *man/getInputIdCoef.Rd
193c6624b0abb313d6948d89214843f1 *man/getModelCoefs.Rd
d89a379d4331dcb4afc063f1ff9ef9a6 *man/getNumberOfRegulatedGenes.Rd
481a2e3438e6a4b2ed5345c73e44151e *man/getNumberOfSignificantGenes.Rd
d50135fc6bd2ff389c80110ccf0428df *man/getSEModel.Rd
1d3f53ba3b1cd0d4d94f1f0e81c4fad2 *man/getTopFeatures.Rd
1f798d1a0d9585679f0f066b24ab9aae *man/getTopGenes.Rd
74eba2c7aab5b8e18c47d8137e653c17 *man/getTopTableFromModel.Rd
c10750d0d9c7cbd179acc3156b3a51a4 *man/ggPlotTheme.Rd
c28a3182b2b3038b7b206b40c2b0ecb4 *man/isModel.Rd
2ca2f66f16f2b3dc6a170f519cf8f67c *man/isTopTable.Rd
a68fa3d79f3c0cbfe4b83ee9c0383e72 *man/labelCorr.Rd
0ed19d2dddfb1692495e117d55fbc22b *man/labelGenesOfInterest.Rd
60a03a77bd8d0f31e95ca59881722f23 *man/labelTextLRP.Rd
ff5339451543eae067f328c7d48b15a5 *man/labelTopGenes.Rd
d8e24906049bf059a11c606b24b79f9b *man/mainH.Rd
38cff6308510675e6d47c39f4d2fe0dd *man/mainLRP.Rd
06657c970353b8ab07d1b3a62939a2e9 *man/mainMA.Rd
701d99072e8ecfb6a17acf1a54a8e711 *man/mainSP.Rd
c942516bd9663f9d5a377cc6b92de075 *man/mainVP.Rd
39bb40913b43f37da7a1397157c97c01 *man/mainWP.Rd
39d3087d777d67b5a85a92ee1bc412dd *man/makeElementsUnique.Rd
4dda1a965b87b0b4bcb9c415f93e0e57 *man/modelExampleData.Rd
ed3c0c70ec378307d25222ce3709c719 *man/orderComparison.Rd
6fb9a40ad4d6083793734ef4e04669cb *man/orderFeatures.Rd
e15dac9625e909a0fb8bea5e0eb16569 *man/processFeatures.Rd
716f66075ab185087683689cf18cd3e1 *man/reshapeTable.Rd
2feecc5af058a8eced63552a8f69e4d6 *man/runDESeq2.Rd
bd026e080a85e8a13d72d6a399ff0a93 *man/runEdgeR.Rd
212b321ddd29ead4fb86bf8f707fab37 *man/runLimma.Rd
f7d628dbade4bd9d1d6a19b24b717e46 *man/runTopTable.Rd
41a4af1b412881fa51fd8277932ad9ad *man/setCategoricalElement.Rd
684a242c8401e10d4239b8b83020464e *man/setFixElement.Rd
2a99fe6cc83c9a0556f6c4f727b02de1 *man/setGradientScale.Rd
912ad10e777a0bd39c9539caaefca6dd *man/setManualScale.Rd
36cc629a22373fb27764ffa9ea35c594 *man/subsetFeatures.Rd
5f6eaf5840b3fbf1baca6f0077e2e0f2 *man/topFeaturesDeseq.Rd
6455fa7882e3276a292d5b7cec4e8606 *man/topFeaturesEdger.Rd
64748e5e5ebce7f5b62d287debf85730 *man/topFeaturesLimma.Rd
55221708191c82a74ad15c53c54decb6 *tests/testthat.R
db16834a6232b0f7e1c4f80b4211f398 *tests/testthat/helper-data.R
8cf8c54ac1636f9b4f260cdf386f7a8e *tests/testthat/test_checkInputColumns.R
0413d7c3e1f979a578bf1448a199b61d *tests/testthat/test_daHeatmapLogFC.R
ee4aa5da5b3a6d7f8ccfbf46ea8bf0d1 *tests/testthat/test_daLogRatioPlot.R
127ea36b0cbfa653efbb5d0e90f09bd8 *tests/testthat/test_daMAplot.R
cb07438a052d8f2f750b57411f5f43f1 *tests/testthat/test_daScatterPlot.R
09ea3d5d9e6d4368f1ec8b3bcc7b5917 *tests/testthat/test_daSignificantGenesBarplot.R
5ff794f0d52366486c48363f80304af2 *tests/testthat/test_daUpset.R
c8e84c19d563b3cd55583e859c2aebe0 *tests/testthat/test_daVolcanoPlot.R
5f93c5dd9cca700f370c7f7848d253a1 *tests/testthat/test_daWaterfallPlot.R
7c0f020b58c24fbcd1259459536d6f47 *tests/testthat/test_getCoefLabel.R
d92e5fa4a8969de4301498c3a6f0b8f2 *tests/testthat/test_getFeatures.R
1690c4fd3e3bbba49fff849ccfbdcf64 *tests/testthat/test_topTables-arrange.R
2555f6f41eb7f5bc7a001c7b14456267 *tests/testthat/test_topTables-extract.R
ea128a97b9b6c4aa65996d4c5df7d873 *vignettes/daVis-vignette.Rmd
