# Generated by roxygen2: do not edit by hand

export(compareFootprints)
export(createExampleData)
export(diNOMeTest)
export(footprintCalc)
export(footprintPerc)
export(footprintQuant)
export(fpPercHeatmap)
export(metaPlots)
importFrom(BiocGenerics,cbind)
importFrom(ComplexHeatmap,Heatmap)
importFrom(GenomicRanges,
  GPos,
  GRanges,
  end,
  mcols,
  seqnames,
  start,
  strand
)
importFrom(Matrix,Matrix)
importFrom(SummarizedExperiment,
  "assay<-",
  "assays<-",
  SummarizedExperiment,
  assays,
  colData,
  rowData,
  rowRanges
)
importFrom(circlize,colorRamp2)
importFrom(cowplot,plot_grid)
importFrom(dplyr,left_join)
importFrom(edgeR,
  DGEList,
  calcNormFactors,
  estimateDisp,
  glmQLFTest,
  glmQLFit,
  topTags
)
importFrom(ggplot2,
  aes,
  facet_wrap,
  geom_abline,
  geom_point,
  ggplot,
  ggtitle,
  scale_color_manual,
  scale_shape_manual,
  theme_classic,
  vars,
  xlim,
  ylim
)
importFrom(methods,is)
importFrom(rlang,.data)
importFrom(stats,
  complete.cases,
  dist,
  hclust,
  loess,
  model.matrix
)
importFrom(stringr,str_extract)
importFrom(tibble,tibble)
importFrom(tidyr,
  pivot_longer,
  pivot_wider
)
importFrom(tidyselect,all_of)
