% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/result_classes.R
\docType{class}
\name{dnaEPICO_preprocessingPheno-class}
\alias{dnaEPICO_preprocessingPheno-class}
\alias{dnaEPICO_preprocessingPheno}
\title{Result class returned by preprocessingPheno}
\description{
Objects of class \code{'dnaEPICO_preprocessingPheno'} are list-based results
returned by \code{\link[=preprocessingPheno]{preprocessingPheno()}}. They describe the phenotype data,
methylation matrices, timepoint splits, longitudinal merges, and optional
exported files.
}
\section{Structure}{

\describe{
\item{pheno}{Phenotype table read from \code{phenoFile}.}
\item{metricsData}{Object returned by \code{\link[=loadMetricsPreprocessingPheno]{loadMetricsPreprocessingPheno()}}.}
\item{timepointData}{Object returned by
\code{\link[=splitTimepointsPreprocessingPheno]{splitTimepointsPreprocessingPheno()}}.}
\item{combinedData}{Object returned by
\code{\link[=combineTimepointsPreprocessingPheno]{combineTimepointsPreprocessingPheno()}}.}
\item{clockFoundation}{Object returned by
\code{\link[=buildClockFoundationInputsPreprocessingPheno]{buildClockFoundationInputsPreprocessingPheno()}}.}
\item{savedFiles}{Object returned by \code{\link[=writePreprocessingPhenoOutputs]{writePreprocessingPhenoOutputs()}}
when \code{saveOutputs = TRUE}, otherwise \code{NULL}.}
\item{logFile}{Resolved path to the optional log file, or \code{NULL} when
logging was disabled.}
}
}

\seealso{
\code{\link[=preprocessingPheno]{preprocessingPheno()}}
}
