% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/preprocessingMinfiEwasWater_steps.R
\name{buildRawMinfiEwasWater}
\alias{buildRawMinfiEwasWater}
\title{Build raw minfi preprocessing objects}
\usage{
buildRawMinfiEwasWater(
  RGSet,
  verbose = FALSE,
  logs = FALSE,
  log_dir = NULL,
  log_file = "log_buildRawMinfiEwasWater.txt"
)
}
\arguments{
\item{RGSet}{An \code{RGChannelSet}.}

\item{verbose}{Logical. If \code{TRUE}, emit progress messages with \code{message()}.}

\item{logs}{Logical. If \code{TRUE}, write the same messages to a log file.}

\item{log_dir}{Character or \code{NULL}. Directory used for the log file when
\code{logs = TRUE}.}

\item{log_file}{Character. File name used when \code{logs = TRUE}.}
}
\value{
A list with class \code{'dnaEPICO_minfiEwasWater_raw'} containing \code{MSet},
\code{RatioSet}, and \code{GSet}.
}
\description{
Create a raw \code{MethylSet}, \code{RatioSet}, and genome-mapped object from an
\code{RGChannelSet}, and return them together in a single structured object.
}
\examples{
\dontshow{if (requireNamespace("minfiData", quietly = TRUE)) withAutoprint(\{ # examplesIf}
ex <- dnaEPICO:::exampleMinfiBaseDataDnaEpico()
raw_data <- buildRawMinfiEwasWater(
    RGSet = ex$RGSet,
    verbose = FALSE,
    logs = FALSE
)
names(raw_data)
\dontshow{\}) # examplesIf}
}
