3c0ab2e16d7e94cc5098e4f39541b8e1 *DESCRIPTION
94c8b2cb1957f9b305b1f1a6ae9ab9ed *LICENSE
f2807d53e1940cbe4f7466c1c6b11806 *NAMESPACE
5e47ac6e5043880b1cbe6bc3565b2273 *NEWS.md
69e0f5a18cffd5982f1a88ab56d86946 *R/AllClasses.R
9c371bb333c53d61f342a6836a862a49 *R/RcppExports.R
c543d971b452ecdca95783312bb81374 *R/addWeights.R
5a068ee5247df8d2006f035d2aa44d94 *R/calculateActivity.R
35d44d80aba5f24c50506046db3bba5a *R/calculateP2G.R
5cef4d606348ec71161ddeded5ffdf78 *R/cellAggregation.R
ee1df3252e42d6e0945c70430ee8da72 *R/constructRegulon.R
5946583d73329ff24438229086e4c7b7 *R/epiregulon-package.R
a083f9a2bff1ac78dd564e8669a8b85d *R/findMarkers.R
edd0ba76256f7b29d7b25812deea12f6 *R/motif.R
ccf85569547d42ef531f47e96c80f026 *R/regulonPruning.R
d41d8cd98f00b204e9800998ecf8427e *R/rename_files.R
ef601e76db73573e8dbc05c076cd6da6 *R/utils.R
700d5f250be515760ee3edfd0a9f8e41 *R/validation.R
339786daa59bf7a7c3cf4d9eb07085f4 *README.md
0299b877c86483a64534ed3cfc765ba0 *build/vignette.rds
d9d9e618d3ece5cb3e457c0396a8c5a7 *inst/CITATION
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a52ff945d55d86431d418d6c70614bba *inst/doc/multiome.mae.Rmd
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d0a5fe961174ec1846210e228cc18d4a *man/addLogFC.Rd
bae62393d70cba5a51232de191416770 *man/addMotifScore.Rd
9cfd34e08b56b57e712d4e7e5676d270 *man/addTFMotifInfo.Rd
59fab1baceca94511403a64f9534f0a7 *man/addWeights.Rd
197a36b08ce5cbad347ad905c2a965ab *man/aggregateAcrossCellsFast.Rd
98edba05cc7fa6a041442f19e2e54499 *man/calculateActivity.Rd
97d2b0a14ef78864b0fc1380d2b2745c *man/calculateP2G.Rd
0e657509ac89714587edddfb1d9810d4 *man/epiregulon-package.Rd
9d2f9c147dadbaac2a2ce0894c1877ca *man/findMarkersSimple.Rd
ffb6273100f001d07cdc250700d388a8 *man/getRegulon.Rd
a6333055f1a0a22ec68582eb68bea2da *man/getTFMotifInfo.Rd
495008b9feaeeee74391d7e2af37ccfa *man/optimizeMetacellNumber.Rd
3f224496937f136a32321fb769efad11 *man/pruneRegulon.Rd
79496360a88f123abc5bf8376bbc2f8b *src/RcppExports.cpp
3ecda6e87bcd63657843743a5bb31854 *src/binom.c
177c62be67393aaa9e47fdcf68d6fb9b *src/fast_chisq.cpp
5428bc80fd9c0ac260b42b97a6194733 *src/fast_wilcox.cpp
4f984e55b37c6e6ce716250462dc0b7f *tests/testthat.R
5910cc2a6a1ab73b07bcd4797345951f *tests/testthat/test-addLogFC.R
5739d80aca8be57c63bb6c439805d365 *tests/testthat/test-addWeights.R
5bd67fa8f2c7c3734756e36c3aa27682 *tests/testthat/test-aggregateCells.R
998aeeeab308b22dd81103a28d3d8faf *tests/testthat/test-calculateActivity.R
5754365434d2e1867b01f2cdf7effcd6 *tests/testthat/test-calculateP2G.R
faac29eb3136d15b15ef7ea95d486524 *tests/testthat/test-constructRegulon.R
bf3bc18f8bd6452f3898194bf68a0d68 *tests/testthat/test-fast_wilcox.R
32ceae99b887fc6680e44e0c31a0b8c9 *tests/testthat/test-fastcount.R
ee0a6e9ab33ace818df1c2824b122040 *tests/testthat/test-motif.R
0cbe8f8102093201eab427c09c2025da *tests/testthat/test-regulonPruning.R
ece834e84ba76519cf1323d1cd16dc6f *tests/testthat/test-utils.R
2d3c8816f7f2893ebb25dee9461c8917 *tests/testthat/test-validation.R
a52ff945d55d86431d418d6c70614bba *vignettes/multiome.mae.Rmd
