29dadc5f9a3fa89700c178a8fe81a042 *DESCRIPTION
d5e60b3f44df9ccc7a16b839738d3e34 *Dockerfile
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
77eab452b8f34aace19c067f4713efed *NAMESPACE
6b6a234fbd4ad5b80cf02b2f50db2120 *R/atac.R
aa06f5be2cf83bbbd9c3113d629e2c39 *R/atac_processing.R
786eba339da792a3993152b0a5d9660a *R/clustering.R
c1946c8cb8d609dbfebd2162c771014a *R/computeDoubletDensity.R
281df17643c953845c17bc53271a08ab *R/doubletThresholding.R
d76beedac3586b203cb2b29c69d839bf *R/enrichment.R
77f7cab0c590dca4510eb7263c39146e *R/findDoubletClusters.R
77efcb718c93217e3822ab9f617506c2 *R/getArtificialDoublets.R
5654233d81702dac99008fd4166b6c71 *R/getFragmentOverlaps.R
5dfc605d4d08a8cda300089257778b84 *R/misc.R
8b4cd3b8d064d8afa7b9d3525223a4be *R/plotting.R
04495ca36113753e3c6b711fa28acd32 *R/recoverDoublets.R
17a0deea0d76425a5859be945d995c34 *R/scDblFinder.R
76c5a98629a7a04ecc4f93e7487e9dcb *README.md
1f3d82c37b02fef4446711ab9ebac9d9 *build/vignette.rds
4e3aca4b8d906aeb9f5869800ea7509c *inst/CITATION
d4f534ae0e1482f6a00bb14f860291c7 *inst/NEWS
11a3f1b2a83b7f53bec50d195ff229ab *inst/doc/computeDoubletDensity.R
9b9c2ca69739ee5c63e4e6054f066817 *inst/doc/computeDoubletDensity.Rmd
a57ee8414e429999bc36bed7747aebe8 *inst/doc/computeDoubletDensity.html
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b5f4bec3f2fe27bb1b14710bfea25176 *inst/doc/introduction.R
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14b4cc4eff3abcf6faff74313469d7f9 *inst/doc/recoverDoublets.Rmd
2560f8d521504b861fbca3a0f17305b8 *inst/doc/recoverDoublets.html
91c3e18613c9a0a897f5dfcef139cc4f *inst/doc/scATAC.R
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db24ea37d3be6c2ef47e6abb63ad4159 *inst/doc/scATAC.html
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58dcc208f9e2f6f57ecf950935b6f342 *inst/extdata/example_fragments.tsv.gz
82a42c7e0076ac0844e9a18c06c10cc5 *man/TFIDF.Rd
13392625f503c73a773336c1968bab41 *man/addDoublets.Rd
7049b450d50ed8f3646cf26c06245d34 *man/aggregateFeatures.Rd
389295148af92c761bb6a74344693a66 *man/amulet.Rd
3aec3c1b6bacd6df619693ec012277f9 *man/amuletFromCounts.Rd
7d971954654c69ee1adfcbbb328af41c *man/clamulet.Rd
02c36b5cfeda55c54523c01cbde8f976 *man/clusterStickiness.Rd
1a26027f06cb6bad53b6e4ec5c6fcc1c *man/computeDoubletDensity.Rd
e592856d8169821dd921478c716766df *man/createDoublets.Rd
92c563a65822cb75c5162695da8897e4 *man/cxds2.Rd
4e06183743b9d496e4706e27bd33667d *man/directDblClassification.Rd
1e549c3e77366a3b3f65bce04509ce0b *man/doubletPairwiseEnrichment.Rd
c1050c8fa343c3af83b9447a1db87c2d *man/doubletThresholding.Rd
d3aaf1c916c7339125a446dfbdaf2cd6 *man/fastcluster.Rd
e61890f61912ffce51b03b92a1e9507c *man/findDoubletClusters.Rd
661b301bbf39dfc72e7bd97170bb78cf *man/getArtificialDoublets.Rd
aabe8a063c6fc20c49429f8b6c3abd01 *man/getCellPairs.Rd
2bc44945d6ff8fc307d3c36d190036f5 *man/getExpectedDoublets.Rd
302c73e9a93e3aef3b353664fe3a54c0 *man/getFragmentOverlaps.Rd
718e35893fc0776d562d243f9bcad3b5 *man/mockDoubletSCE.Rd
a86eb0f8db511861ba7e287413571f55 *man/plotDoubletMap.Rd
c90f888cc63d18970755e96ac747db5f *man/plotThresholds.Rd
dac5fdef37c3995647b4485797e9c07d *man/propHomotypic.Rd
d1036036bf3113b2604c3b4a7a1aa4b8 *man/recoverDoublets.Rd
c819723ca5e88eb8b1c58a83f0d16ef3 *man/scDblFinder.Rd
aafb140169bbf55e6ca8fae1d6cc58c1 *man/selFeatures.Rd
fb1a27f87b8b4a8979a688fafc7f206c *tests/testthat.R
63bf4de1b4ee5600b1766c8082199d8a *tests/testthat/test-computeDoubletDensity.R
85a147769bcf343a7ec4d233b5961808 *tests/testthat/test-findDoubletClusters.R
baa0b66dc740a059202038a2b6b156bb *tests/testthat/test-recoverDoublets.R
db037e63aaeb0e658f4596a34a6a0a37 *tests/testthat/test-scDblFinder.R
9b9c2ca69739ee5c63e4e6054f066817 *vignettes/computeDoubletDensity.Rmd
b85f67546136b6d6a40056a646487216 *vignettes/findDoubletClusters.Rmd
cf273879f2a49c40176ec1e6cebe6126 *vignettes/introduction.Rmd
14b4cc4eff3abcf6faff74313469d7f9 *vignettes/recoverDoublets.Rmd
7716cbd4712b92fa3588fef543c4bb88 *vignettes/scATAC.Rmd
7d8ae5f47fd01e461cabe603028564d9 *vignettes/scDblFinder.Rmd
