Package: FlowSorted.Blood.EPIC
Type: Package
Title: Illumina EPIC data on immunomagnetic sorted peripheral adult
        blood cells
Version: 2.17.1
Authors@R: c(
    person(
        given = c("Lucas", "A."),
        family = "Salas",
        email = "lucas.a.salas.diaz@dartmouth.edu",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-2279-4097")
    ),
    person(
        given = c("Devin", "C."),
        family = "Koestler",
        email = "dkoestler@kumc.edu",
        role = "aut"
    ),
    person(
        given = c("Rondi", "A."),
        family = "Butler",
        role = "ctb"
    ),
    person(
        given = c("Helen", "M."),
        family = "Hansen",
        role = "ctb"
    ),
    person(
        given = c("John", "K."),
        family = "Wiencke",
        role = "ctb"
    ),
    person(
        given = c("Karl", "T."),
        family = "Kelsey",
        role = "ctb"
    ),
    person(
        given = c("Brock", "C."),
        family = "Christensen",
        role = "ctb"
    ),
    person(
        given = c("Kasper", "D."),
        family = "Hansen",
        role = "ctb",
        comment = "Contributor to the original minfi implementation"
    ),
    person(
        given = "Jean-Philippe",
        family = "Fortin",
        role = "ctb",
        comment = "Contributor to the original minfi implementation"
    ),
    person(
        given = c("Shan", "V."),
        family = "Andrews",
        role = "ctb",
        comment = "Contributor to the original minfi implementation"
    ),
    person(
        given = c("E.", "Andres"),
        family = "Houseman",
        role = "ctb",
        comment = "Author of the original constrained-projection method"
    ),
    person(
        given = c("Andrew", "E."),
        family = "Jaffe",
        role = "ctb",
        comment = "Contributor to the original minfi implementation"
    ))
Description: Raw data objects to be used for blood cell proportion
        estimation in minfi and similar packages. 
        The FlowSorted.Blood.EPIC object is based in samples assayed
        by Brock Christensen and colleagues; for details see Salas et al. 2018.
        https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110554.
License: GPL-3
Depends: R (>= 3.5), minfi(>= 1.21.2), ExperimentHub
Imports: genefilter, nlme, quadprog, graphics, stats, utils,
        AnnotationHub, SummarizedExperiment, S4Vectors
Enhances: FlowSorted.CordBloodCombined.450k(>= 1.11.5)
biocViews: ExperimentData, Homo_sapiens_Data, Tissue, MicroarrayData,
        Genome, TissueMicroarrayData, MethylationArrayData
NeedsCompilation: no
LazyData: yes
LazyDataCompression: gzip
Suggests: knitr,rmarkdown, FlowSorted.Blood.450k(>= 1.0.1),
        EpiDISH,FlowSorted.CordBloodNorway.450k, testthat,
        IlluminaHumanMethylation450kmanifest(>= 0.2.0),
        IlluminaHumanMethylationEPICmanifest,
        IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1),
        IlluminaHumanMethylationEPICanno.ilm10b4.hg19
VignetteBuilder: knitr
Encoding: UTF-8
URL: https://github.com/immunomethylomics/FlowSorted.Blood.EPIC
BugReports: https://github.com/immunomethylomics/FlowSorted.Blood.EPIC/issues
Config/roxygen2/version: 8.1.0
git_url: https://git.bioconductor.org/packages/FlowSorted.Blood.EPIC
git_branch: devel
git_last_commit: d4de210
git_last_commit_date: 2026-09-16
Repository: Bioconductor 3.24
Date/Publication: 2026-09-17
Packaged: 2026-09-17 15:21:09 UTC; biocbuild
Author: Lucas A. Salas [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2279-4097>),
  Devin C. Koestler [aut],
  Rondi A. Butler [ctb],
  Helen M. Hansen [ctb],
  John K. Wiencke [ctb],
  Karl T. Kelsey [ctb],
  Brock C. Christensen [ctb],
  Kasper D. Hansen [ctb] (Contributor to the original minfi
    implementation),
  Jean-Philippe Fortin [ctb] (Contributor to the original minfi
    implementation),
  Shan V. Andrews [ctb] (Contributor to the original minfi
    implementation),
  E. Andres Houseman [ctb] (Author of the original constrained-projection
    method),
  Andrew E. Jaffe [ctb] (Contributor to the original minfi
    implementation)
Maintainer: Lucas A. Salas <lucas.a.salas.diaz@dartmouth.edu>
