Drug Response Data Analysis Using CMap Database
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Documentation for package ‘CONCERTDR’ version 0.99.2
Help Pages
| annotate_drug_results | Annotate CONCERTDR Results with Drug Information |
| create_signature_from_gene_lists | Create a Signature Data Frame from Gene Lists |
| extract_cmap_data_from_siginfo | Extract CMap Data Using Siginfo File Directly |
| extract_compound_id | Extract Compound ID from Signature Matching Results |
| extract_signature_zscores | Extract z-score matrix for barcode heatmap |
| fuzzy_drug_match | Fuzzy String Matching for Drug Names |
| plot.cmap_signature_result | Plot method for cmap_signature_result objects |
| plot_signature_direction_tile_barcode | Plot 2D Barcode Heatmap from GCTX (Single Drug Context) |
| print.cmap_signature_result | Print method for cmap_signature_result objects |
| process_combinations_file | Process Multiple Combinations of Time, Dose, and Cell Line |
| process_signature_with_df | Process drug response signatures against reference data in a dataframe |
| subset_siginfo_beta | Subset siginfo_beta file interactively with smart preview |
| summary.cmap_signature_result | Summary method for cmap_signature_result objects |