filter_se_missing       Filter proteins by missingness within
                        conditions (SummarizedExperiment)
impute_se               Impute missing proteomics intensities within
                        conditions (SummarizedExperiment)
plot_deregulogram       Deregulogram plot for interaction models
                        (2-level factors)
plot_volcano_customized
                        Volcano plot for differential abundance results
run_proteomics_pipeline
                        Run a the downstream proteomics pipeline
                        (filter, impute, limma, reporting)
test_limma_customized   Differential abundance testing with limma
                        (imputation-aware FDR)
