235f3f5f235d3d3d1a056d2d02054afe *CITATION
01ac8dba439965e5a269febf3992e5be *DESCRIPTION
668032ac3410fca5b17c68bfcf5e7dd7 *INDEX
390ec45d4fcf9a19eb7b8afcde678818 *LICENSE
23f0bdc7596726dbba33fb28f72a8d1a *Meta/Rd.rds
8bd78fe4d71c3aeb1a0f4982ee51622b *Meta/features.rds
5937b534a3ac0bd0ae1511ce3009bb30 *Meta/hsearch.rds
dd75a539c5ac9623e2d6040241c3c8e6 *Meta/links.rds
efd8d9807ca48583f689bbb1b8cf4dfe *Meta/nsInfo.rds
3cb73de6c5576afeee83f8c733d179fb *Meta/package.rds
fd9bcb396d72e1039b2906ca79efcf37 *Meta/vignette.rds
40e3948ce838d97aae272b9459447fbd *NAMESPACE
ab66dcace749116172cbd2ca24f0e47e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/lineagespot
d36366b44b867be97455a12c89726d92 *R/lineagespot.rdb
dee41b73c1169c557b4b5299aab8daee *R/lineagespot.rdx
505be48b4416a98d14abd06602607b81 *README.md
074a2500e3d4dc40a9b4a703035de8f8 *doc/index.html
a93bdc3a9b7f87d8952bea985041176e *doc/lineagespot.R
e8c040fb4a7658ecd5dab9d21dcf8ecc *doc/lineagespot.Rmd
11646dab4665cd2b7887eba42b06392d *doc/lineagespot.html
f5e0a3774b7342f30933a6a6096b87d8 *extdata/NC_045512.2_annot.gff3
75d5f9e5aa25e8295175be3f01e5c801 *extdata/ref/AY.1.txt
a63320752bc2b7751296b4449f6e97c7 *extdata/ref/AY.2.txt
d4411d1c25b50414e66bc84fa561ad82 *extdata/ref/AY.3.1.txt
9cadcd3d11009852ef56b367f85192c2 *extdata/ref/AY.3.txt
6c30d353b0b6943653fcf8ddd4191f27 *extdata/ref/B.1.1.7+S_E484K.txt
9ea0bb2f409d7477cd4fce4f6961e883 *extdata/ref/B.1.1.7.txt
37988678fe4feeb5615208b395df7761 *extdata/ref/B.1.351.2.txt
bf8aba1c30257ea58a10556a1e990a98 *extdata/ref/B.1.351.3.txt
34a840993d5217bac537fe1d586887ad *extdata/ref/B.1.351.txt
8856c72b91d113b8ba7ae808637c44e3 *extdata/ref/B.1.617.2.txt
baba26946cb2b1592e81f3d031af4ab6 *extdata/ref/P.1.1.txt
09d79737395c6c69482e93cd753ba4ab *extdata/ref/P.1.2.txt
09d79737395c6c69482e93cd753ba4ab *extdata/ref/P.1.txt
55367e21ab319d455b1f86c15f770c6f *extdata/srep-article-code/README.md
7d232ebab2293db3c3157327af2c4bb1 *extdata/vcf-files/SampleA_freebayes_ann.vcf
e99b4f3fc50668b0f4f8ab04eb00d0e3 *extdata/vcf-files/SampleB_freebayes_ann.vcf
71c9b4573e3e3f830fd4f2ff2f0e2b46 *extdata/vcf-files/SampleC_freebayes_ann.vcf
ac8c40a892e22d23c759b14c1ee5f213 *help/AnIndex
dd7d86c84ac8f7ba4c64884c04fdf75d *help/aliases.rds
4255254b1ac03456fffe3e886d244556 *help/lineagespot.rdb
89905421a984410dca9301bb35b17902 *help/lineagespot.rdx
b7c16f4074cc7e2cf810a85db152cc73 *help/paths.rds
6537b4c659aafce794c20e0081b3768b *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
9c4d7c29f3d4c520b036f6468d6f53d5 *scripts/README.md
c312f2fdbc6e364b727fbed8b26623fb *scripts/raw-data-analysis.md
