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title        = {{Spatial transcriptomics of a lycophyte root sheds light on root evolution}},
author       = {X. Yang and W. Poelmans and C. Grones and A. Lakehal and J. Pevernagie and M. Van Bel and M. Njo and L. Xu and H. Nelissen and B. De Rybel and H. Motte and T. Beeckman},
journal      = {Curr. Biol.},
pages        = {4069 - 4084},
volume       = {33},
number       = {19},
year         = {2023},
keywords     = {spatial transcriptomics, evolution, lycophyte, selaginella, roots, root cap, wox, shr, scr, endodermis},
issn         = {0960-9822},
doi          = {10.1016/j.cub.2023.08.030}
}
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title        = {{Distance to the border in spatial point patterns}},
author       = {M. Joyner and C. Ross and E. Seier},
journal      = {Spat. Stat.},
pages        = {24 - 40},
volume       = {6},
year         = {2013},
keywords     = {distance to nearest edge, nearest neighbor, maps, experimental enclosures},
issn         = {2211-6753},
doi          = {10.1016/j.spasta.2013.05.002}
}
@article{Eng2019,
title        = {{Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH+}},
author       = {C.-H. L. Eng and M. Lawson and Q. Zhu and R. Dries and N. Koulena and Y. Takei and J. Yun and C. Cronin and C. Karp and G.-C. Yuan and L. Cai},
journal      = {Nature},
pages        = {235 - 239},
volume       = {568},
number       = {7751},
month        = {4},
year         = {2019},
issn         = {1476-4687},
doi          = {10.1038/s41586-019-1049-y}
}
@article{Keren2018,
title        = {{A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging.}},
author       = {L. Keren and M. Bosse and D. Marquez and R. Angoshtari and S. Jain and S. Varma and S.-R. Yang and A. Kurian and D. Van Valen and R. West and S. C. Bendall and M. Angelo},
journal      = {Cell},
pages        = {1373 - 1387 - e19},
volume       = {174},
number       = {6},
year         = {2018},
keywords     = {antigens, cd, b7-h1 antigen, cluster analysis, female, humans, indoleamine-pyrrole 2, 3, -dioxygenase, kaplan-meier estimate, lymphocytes, machine learning, mass spectrometry, principal component analysis, programmed cell death 1 receptor, spatial analysis, triple negative breast neoplasms, tumor microenvironment, lymphocyte activation gene 3 protein},
doi          = {10.1016/j.cell.2018.08.039}
}
@article{VanderDoes2023,
title        = {{Using random forests to uncover the predictive power of distance{\textendash}varying cell interactions in tumor microenvironments}},
author       = {J. VanderDoes and C. Marceaux and K. Yokote and M.-L. Asselin-Labat and G. Rice and J. D. Hywood},
journal      = {bioRxiv},
year         = {2023},
publisher    = {Cold Spring Harbor Laboratory},
doi          = {10.1101/2023.07.18.549619}
}
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title        = {{Spatial point patterns: Methodology and applications with R}},
author       = {A. Baddeley and E. Rubak and R. Turner},
year         = {2015},
publisher    = {CRC press}
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title        = {{Smoppix: Unified nonparametric analysis of single-molecule spatial omics data using probabilistic indices.}},
author       = {S. Hawinkel and X. Yang and W. Poelmans and H. Motte and T. Beeckman and S. Maere},
journal      = {Genome Biol.},
year         = {2026},
doi          = {10.1186/s13059-026-03976-5}
}