LRDE
This is the development version of LRDE; to use it, please install the devel version of Bioconductor.
Differential Expression Analysis with Long Read RNA-Seq Data
Bioconductor version: Development (3.23)
Provides hurdle negative binomial models for differential expression analysis with long-read RNA-Seq data.
Author: Ziyang Liu [aut, cre]
, Hongxu Ding [aut, fnd]
Maintainer: Ziyang Liu <jacobleo773 at gmail.com>
citation("LRDE")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("LRDE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LRDE")| Introduction to LRDE | HTML | R Script |
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, LongRead, RNASeq, Regression, Sequencing, Software |
| Version | 0.99.6 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.6.0) |
| Imports | stats, SummarizedExperiment |
| System Requirements | |
| URL | https://github.com/ziyang773/LRDE |
| Bug Reports | https://github.com/ziyang773/LRDE/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, BiocGenerics, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | LRDE_0.99.6.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | LRDE_0.99.6.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/LRDE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LRDE |
| Bioc Package Browser | https://code.bioconductor.org/browse/LRDE/ |
| Package Short Url | https://bioconductor.org/packages/LRDE/ |
| Package Downloads Report | Download Stats |