Changes in version 0.99.7                        

Changes in response to Bioconductor review

New features

  - Added support for both Seurat and SingleCellExperiment objects
    across the package.
  - Expanded unit test coverage for exported functions.
  - Added package-level documentation (?scCertify).
  - Added executable examples for exported functions.
  - Expanded the vignette with an introduction, workflow overview,
    methodology, and interpretation of confidence scores.
  - Improved compatibility with Bioconductor documentation standards.
  - Updated README installation instructions.
  - Improved documentation throughout the package.

Bug fixes

  - Improved handling of metadata for both supported object classes.
  - Improved dimensionality reduction handling for SingleCellExperiment
    objects.
  - Improved marker score computation for SingleCellExperiment inputs.
  - Improved neighborhood agreement compatibility across supported
    object types.
  - Improved runnable examples in package documentation.
  - Updated vignette formatting and chunk labels.
  - Addressed Bioconductor documentation review feedback.

Documentation

  - Updated function documentation for Seurat and SingleCellExperiment
    compatibility.
  - Added additional usage examples.
  - Revised vignette formatting using BiocStyle.