4247af71c572fe6c4a10f59ee8472ee5 *DESCRIPTION
28a0112d79d20c9dd6b8729a6c24b264 *LICENSE
307c8ffdc98c792f6ddffdae4ab13555 *NAMESPACE
6bd141b1f6234827a5f1c3bd918a85c0 *NEWS.md
f6f3d44d5c6b78032778f164b577b023 *R/cmap_download.R
d737f0df54d7960ab819816b4f1e08ec *R/cmap_extract.R
8c6b8854442b48d1e6b3eb10e5dd3fc5 *R/cmap_subset.R
2164cd1b6d8decefc1d3b27ed199f67f *R/cmap_visualization.R
5e34cd49d9375a46a34a2d07d3858adc *R/result_summary.R
ee24d88d8ee65b2a610618174e13bcc0 *R/scoring_methods.R
93da48fada42de6e14220cae364f3b9f *R/signature_matching.R
7dfc522eaba947f4988691a15824c2b1 *R/subset_siginfo_beta.R
d66186101b4506828205fabe4e7331e6 *R/zzz.R
6b0f4ef63e17a9e7e9fbc49eb347826e *README.md
41042d300b101b9adb045b5b9790fd0d *build/vignette.rds
318190dfe80f03f1a99ddb9247b3ce5b *inst/doc/CONCERT_DR.R
cfdb74d9f907c74ed0e72067e4bcd995 *inst/doc/CONCERT_DR.Rmd
93775ec8473813970fd79cb30c1ffc07 *inst/doc/CONCERT_DR.html
582121b6fac8dde056f7648d01596f51 *inst/extdata/example_compoundinfo.txt
0f1651adf4d10f0b2c4fafe2040d307c *inst/extdata/example_geneinfo.txt
420fb9ba4391317008a08655d80b1a7a *inst/extdata/example_reference_df.csv
ebba6fedb3ef1732031827ad1916742e *inst/extdata/example_siginfo.txt
a3b1e9986615bb93c96556e7f7e7dd56 *inst/extdata/example_signature.txt
d11ba2afa05738b972382d8ee20d7f98 *inst/scripts/download_databases.R
d88f34681f6c1d496779b89c85792cd6 *inst/scripts/make_example_data.R
f5def4f44e88c8e7c861c7d43c77faa1 *inst/scripts/slurm_array.bash
fbf23cd51f4f350af41510fc4325a041 *man/annotate_drug_results.Rd
1562dec1a85c64cb59ccbc27dca2ebbf *man/cmap_extract.Rd
3f1709b3c50407f69299c452f9abeb42 *man/create_signature_from_gene_lists.Rd
a2e75dd8053443fafdd202aed528b0bb *man/create_summary_from_results.Rd
5db8667f52ada791c7ccb5f1ded57458 *man/dot-apply_score.Rd
cd1a6ca0c0c57e25613822727dff05af *man/dot-matrix_to_extreme_list.Rd
954de36e766675a6c4b5d5454aaa2d24 *man/dot-matrix_to_name_ranked_list.Rd
50a7fab605a96064de6a201e0dcbf397 *man/dot-matrix_to_signed_rank_list.Rd
1312de381ae904cb34ed582c8b6b4bd0 *man/dot-matrix_to_value_ranked_list.Rd
18f1c23c946963eee0cbd063e0042a55 *man/dot-permutation_pvalues.Rd
3d5b3ed8ed5e4edbf84fecf6d536bf9e *man/dot-validate_ref_matrix.Rd
3855b1ebfa162f69ff45c7748568eef1 *man/extract_cmap_data_from_siginfo.Rd
41c67267eff9dce5affb4b57cc7c12a0 *man/extract_compound_id.Rd
881e80438a738c31ffdfab0890132968 *man/extract_signature_zscores.Rd
fbaa00834675f47b58e3b83bf98336ab *man/fast_parse_gctx.Rd
68646e1dfc91c18e9fe857ebec78b023 *man/fast_read_meta.Rd
39574bcb1d489706512eb8804b4710fe *man/fuzzy_drug_match.Rd
831345951ec1806a855bed37de864d1b *man/get_rid.Rd
4b803e825bb9c9841608cff75c535e60 *man/plot.cmap_signature_result.Rd
5709a509e572fbb0426bfbeffd286f3a *man/plot_signature_direction_tile_barcode.Rd
27d465c099d4715334c2f4daa87117e4 *man/print.cmap_signature_result.Rd
a2692baf0db98a31ef21301932ef6ecb *man/process_combination.Rd
f275e3a9e2dcf995cec7815ff6fb1bf2 *man/process_combinations_file.Rd
3f01ec56fec33eda006204a9d2bd25f5 *man/process_signature_with_df.Rd
91b77838d2123b61025918ce9c4508ba *man/score_gsea0.Rd
f37b9cfb7ff23e3e355d51569b72268d *man/score_gsea1.Rd
d525724948802952c629890644b47404 *man/score_gsea2.Rd
e608c5b5cc0245091fe74d7c338b95e4 *man/score_ks.Rd
3bc49452279b7f7bdea6c481b40fa070 *man/score_xcos.Rd
e62213556f29568489ae414926f30e91 *man/score_xsum.Rd
af35a833eedc0259392ea417e4620d36 *man/score_zhang.Rd
4a2f0a1d320c3dffcc42b3efeaf8ed3a *man/scoring_methods.Rd
183be84b02d16ae9299d6e9c76bd126d *man/subset_siginfo_beta.Rd
7aac5ce58aaef3cdf03a4de005a69ea1 *man/summary.cmap_signature_result.Rd
022153d32927ebac420d7a617f076305 *tests/testthat.R
020f603463dd74b8b278c6a024503da5 *tests/testthat/test-cmap-extract.R
db89b9d6957bd8d10d9148ac06ab4a9f *tests/testthat/test-result-summary.R
702c71c40a88d61226c235f17a367501 *tests/testthat/test-scoring-methods.R
79fe79cf2d23ac9315764de89f3c1bf2 *tests/testthat/test-signature-matching-extended.R
48c50afb3001adf23913e566d93a3011 *tests/testthat/test-visualization-extended.R
cfdb74d9f907c74ed0e72067e4bcd995 *vignettes/CONCERT_DR.Rmd
