bcd5cfaf4acc767b178639a2fd7dee77 *DESCRIPTION
f5b2113d4ea60edbaba5c8418c6ede70 *NAMESPACE
e48ff3c589b57d032de264907d58b2cb *NEWS
989166524401987ed3aac607547e2aed *NEWS.md
ff3cdec1d3e4a084167c7653eb947eb6 *R/AllGenerics.R
ef85cc18248fadf0816945b060ab4742 *R/ChIPseeker-package.R
85431a98efcba847ecac250ad5f41724 *R/GEO.R
c0311bbd97db9b2bdcf28aafe1ab1ebf *R/addGeneAnno.R
4bf36bf195f424b5a03763b72fe830c7 *R/annotatePeak.R
5111b94565ee7ed307a3dce0b4a1d707 *R/covplot.R
779b4f61710b46b307907d1158dcdb4c *R/csAnno.R
e3f82126db76d3b670ba6c98cd5d5f3b *R/dplyr-verb.R
d32c0a5397e0f52b0aee962b67e802e5 *R/enrichOverlap.R
98846663e1b51855c591bd28cde40b14 *R/getFlankingGene.R
86886ce81c05c551831259347f0e63cf *R/getGenomicAnnotation.R
117a7f43bfd76da68582e8129893dd16 *R/getNearestFeatureIndicesAndDistances.R
53d9c427b233816f755adabbab6d5532 *R/plotAnno.R
a6edcb5183e8000bf56129a1214055d6 *R/plotDistToTSS.R
a328a19c77038229f4f66dce8c4ce57d *R/plotTagMatrix.R
bb7d4ed0500c7f15954220cdcd70dd8b *R/readPeakFile.R
e528dcfe9cc35e0ceb9860c182a96066 *R/seq2gene.R
0af7da957f57d868e614b391bfe7e872 *R/subset.R
69e3dbe802387331f3ebc780089ef941 *R/tagMatrix.R
cb9f1d5a14a09372e48824302eed871e *R/upsetplot.R
edb1ba77ae9eaa5d473d873e1794cd24 *R/utilities.R
ef2dc1bb4e430b82e92fadca0dff5764 *R/vennpie.R
9e330f978196f8b78f9960c2c62f109b *R/vennplot.R
deecb0bb2f8dd13ea94314dad31d0a5d *R/zzz.R
94921421229106d7f9fb07080eb785a2 *README.md
818eaa2d6f97f9ef63645b7f898355ed *build/vignette.rds
7f469250b24a3a5d60ba2a1830c09dbf *data/datalist
7611acfb8ba4f6f3734bca369911cba4 *data/gsminfo.rda
83b2ad1d3b410f2c78c4508e568d8f1a *data/tagMatrixList.rda
02bbd0a3103952e5a81903a6fa213477 *data/ucsc_release.rda
dacd254062ec9db06c439f858c09084b *inst/CITATION
4d435c5067a666eef55311080258ad55 *inst/doc/ChIPseeker.R
e30beb0945bf6baea43ad455b45d8059 *inst/doc/ChIPseeker.Rmd
1ad5f131f2c42ae7926023e7c0b675f2 *inst/doc/ChIPseeker.html
6fc72234bb1ba07fdd2f8e375e5c2a69 *inst/extdata/GEO_sample_data/GSM1174480_ARmo_0M_peaks.bed.gz
7a05f3078dae3c23247e144248e59b77 *inst/extdata/GEO_sample_data/GSM1174481_ARmo_1nM_peaks.bed.gz
160621ce086b500f66282d8943e336b7 *inst/extdata/GEO_sample_data/GSM1174482_ARmo_100nM_peaks.bed.gz
69b2280cf6ef7b912258fd914a1ba18c *inst/extdata/GEO_sample_data/GSM1295076_CBX6_BF_ChipSeq_mergedReps_peaks.bed.gz
d594205880e555d49c1524d0f84b396e *inst/extdata/GEO_sample_data/GSM1295077_CBX7_BF_ChipSeq_mergedReps_peaks.bed.gz
a419593573f3490bcc05730736fdbe70 *inst/extdata/processedGSM.rda
a26fcb8d90dd7c32efefb7655cd9aace *inst/extdata/sample_peaks.txt
388cba1d01b944710160242e1b9a0b34 *inst/test-plot/test-plotPeakProf.R
d69474ddcd5285c480ccaba3fcb7a201 *inst/test-plot/test-plotTagMatrix.R
c27c9af75036234197d17305502f6073 *man/ChIPseeker-package.Rd
e5ca75df70c7c666dd96d9c415b548bc *man/ChIPseekerCache.Rd
2e2544db46032e80a612398e1ef9f78a *man/annotatePeak.Rd
38dc3a038d124d8ee16a84d2e83518de *man/arrange.GRanges.Rd
daf1fc1b2303072af0ccb0076c2eacde *man/as.GRanges.Rd
d37575b99e90635f83559a2141c6d031 *man/as.data.frame.csAnno.Rd
17314508f36749e8997f335b465efb58 *man/combine_csAnno.Rd
b45abf62d0dbdcd3af71e8651cd992dd *man/covplot.Rd
eb4b7ab3d5cdf051f93205e80e5512fc *man/csAnno-class.Rd
751a9fe97ed41c286cd9ae0084a7df04 *man/dot-ChIPseekerEnv.Rd
6d62cb6aeca73b317a6f173f56e15aff *man/dot-onAttach.Rd
b266832f986a3ad50816a74956d0a22c *man/dotFun.Rd
7305c8477e1032ba2bb79c46650b9a7c *man/downloadGEObedFiles.Rd
aef28eb26d56266df5e9b9e55ff7d669 *man/downloadGSMbedFiles.Rd
0e79c86a9dfeb51e4f911aec4b772198 *man/dropAnno.Rd
1c2ea61f948d89b01ed8bb8a2bd640f4 *man/enrichAnnoOverlap.Rd
42f45c7849357a748fd9f94abe44d433 *man/enrichPeakOverlap.Rd
bbe04e889fd03e652763e3eeccf0ed1b *man/filter.GRanges.Rd
5f855ced97a3c99fe2572e195103ee2c *man/getAnnoStat.Rd
2f94e4ce781b1793f85a3b47d6a62911 *man/getBioRegion.Rd
dc26d6b6ee2d363c309ef15445e4ea4b *man/getGEOInfo.Rd
76f05157fed1f7a948ebcf343859e71d *man/getGEOgenomeVersion.Rd
54bd7e6bf480ce5a0738e9e88208a71d *man/getGEOspecies.Rd
2eb43cd29fa4cbea32f0f62a8ae08dc4 *man/getGeneAnno.Rd
79322f95e75ef4931a4b0c4a8f47567d *man/getNearestFeatureIndicesAndDistances.Rd
f2290229f6e5f6429e6adaefad885a16 *man/getPromoters.Rd
1116143f9492ad6ccbb943dd68c5ffe3 *man/getSampleFiles.Rd
c584128762ea3f935df0904806f4304e *man/getTagMatrix.Rd
c8ab2598a000b683a2326bfe72eccac2 *man/getTagMatrix.binning.internal.Rd
696220d8f6281c29da4a1a399e0bff32 *man/info.Rd
81ad3d958649efe3f9fb3b763fac1d99 *man/makeBioRegionFromGranges.Rd
1958876010476d4490e228c8e75655ab *man/mutate.GRanges.Rd
7fe90c5401300f7af000d63b1166a0ea *man/overlap.Rd
8df3cdc9728bb7bbf2e62868d9a20db0 *man/peakHeatmap.Rd
29a0461437a82e16531b96b76743aa4d *man/peakHeatmap_multiple_Sets.Rd
512936d80a68cf6e6428b96c17eb7f85 *man/peak_Profile_Heatmap.Rd
7f5ddc75a6ea8f11cd3e995408ad49f7 *man/plotAnnoBar-methods.Rd
a27b41cddd04c8b372c1e6db2a169d03 *man/plotAnnoBar.Rd
4d5d6f881450bb0670edbd11ab72a2c8 *man/plotAnnoPie-methods.Rd
3396221004d2db2ff2da64aba633ae42 *man/plotAnnoPie.Rd
3e05ddc4d48844ef33eb69ca123ac0f2 *man/plotAvgProf.Rd
1e264772d49a5f84dedb2990c44caa4b *man/plotAvgProf2.Rd
08aef96ba3524089aa0d9fe5b4c0328e *man/plotDistToTSS-methods.Rd
792ba526c641470606375a425189592e *man/plotDistToTSS.data.frame.Rd
66ca74f195089b0114660baef81749b0 *man/plotPeakProf.Rd
59a224278dc8983ba55787669dd2dc6c *man/plotPeakProf2.Rd
357a9e9ecec1b76b34ee1cd8ccccd805 *man/readPeakFile.Rd
07f263aedd1a7b663ab31f8bdee40f9f *man/reexports.Rd
d26b5c46f9a6b1894819afd76ca87189 *man/rename.GRanges.Rd
c3db1a8a788671e507b7f359df0530be *man/seq2gene.Rd
8993ee796acf7126da84259a0d1f20fb *man/shuffle.Rd
8df8c83f2597c8fbbca54d371d26b0e9 *man/subset.csAnno.Rd
0442be766e3a4873a575f5aad019f8e1 *man/tagHeatmap.Rd
6d7e678a85d7c32bfc0de35d9486bd50 *man/upsetplot.csAnno.Rd
c8ed2dd28d723437045bfd7936db81c6 *man/vennpie-methods.Rd
5096d98087fbdb2e772e46f55517bd54 *man/vennpie.csAnno.Rd
a72fcc00451393ff9280257a7d29ed20 *man/vennplot.Rd
3f7aeaa21eea651614f22825d86ca835 *man/vennplot.peakfile.Rd
f516d4f5017565c5cb9ca921f993ca2d *tests/testthat.R
258aae459cd83eb0d83bb924d40d9a4f *tests/testthat/test-bed.R
3938e828e3a88e51d37fb7295fd609f3 *tests/testthat/test-getTagMatrix.R
2fabccdef867ef70c777b35321bc2b25 *tests/testthat/test-txdb.R
e30beb0945bf6baea43ad455b45d8059 *vignettes/ChIPseeker.Rmd
cfa736de68d98ed6684470f8bde74ca9 *vignettes/ChIPseeker.bib
a04420bdba64e09188b1501d4026e2d5 *vignettes/figures/chrCoverage.png
7fafa578529713ad34a2b072492cbb96 *vignettes/figures/plotAvgProf_boot.png
b9d86a498b9e71b35191f78da76b946b *vignettes/figures/plotAvgProf_boot_list.png
241206ddc0580d83febbc160cd64d358 *vignettes/figures/plotPeakProf2_body_extend.png
57f26df091d8d713caa2aa341e9bce95 *vignettes/figures/plotPeakProf_body_boot_list_.png
cb147f393f735b60404c875ad4856238 *vignettes/figures/upset.png
dba5fd26a5db93ffe0ceb619aa4b964f *vignettes/figures/upset_vennpie.png
