995ca416a45c600a57fc440dcef10958 *CITATION.cff
ccb0ed6e78d26e1be957a7cc46fe1b36 *DESCRIPTION
591c00dc63b4b8b146883bb9411e1d2e *LICENSE.md
fec2505bc42c5267762a74e59a6d5252 *NAMESPACE
df6cc46bc7fae1a55b713f3d5065b35a *R/MetaboDynamics-package.R
5953883f2d7227ebed9879507ff3d261 *R/ORA_hypergeometric.R
186d624bc95fcafe7e487b4d54c3f446 *R/cluster_dynamics.R
9b860da237f8470c293457916dd26444 *R/compare_dynamics.R
9214df9312c90fffa625e3db1a9529be *R/compare_metabolites.R
ff2b93b73fcdbfcbda9ef6e008ec1d3e *R/diagnostics_dynamics.R
589b05019c2e49fce572c469a0e90ded *R/estimates_dynamics.R
d16272fcd1bae4d77687665953934e1e *R/fit_dynamics_model.R
d0e6bac33879a047ef419bdc71f0ac02 *R/get_ORA_annotations.R
f149e720afa8fd50fcbdb1b37a60b078 *R/heatmap_dynamics.R
88b0d7d4f8223683f1677a19171d3c10 *R/heatmap_metabolites.R
2c0b83500f1477cc3e04f3dfefe155dc *R/plot_ORA.R
5568055b76719033cfcad849cee46727 *R/plot_PPC.R
704defc5524170879143c7aef18896b4 *R/plot_cluster.R
14305f9b432691f463ca720c94075f10 *R/plot_diagnostics.R
0d9108ec8fcbac87cc80553dca49c0c3 *R/plot_estimates.R
41d25f1886d1be3dabd1e537b3a0c259 *R/stanmodels.R
93a0b8259cd78ec6bf4922d99314926a *R/utils.R
10ed4b4e59de436eaaff94ad02f89ce4 *README.md
ae9e81e654002663819cab050740b21f *build/vignette.rds
7e297a31e37e77c201a2bacff2f979eb *configure
5fdedca26c8830d7bb06aa1c4a634204 *configure.win
7fd6ed313d3f7de40d873cefced7c5ab *data/IDs.rda
70b5dd3a4b318a800831b020d0e49821 *data/longitudinalMetabolomics.rda
12b7ea832642d73654ffabd077263582 *data/longitudinalMetabolomics_df.rda
5a2ef8242c25e164fddf832f4bbd5a4d *data/metabolite_modules.rda
aa8babc300554c4f88bd2c7b571bd652 *data/modules_compounds.rda
1538fe2e5ca76cb57b9b6f3da175e756 *inst/NEWS.md
1333d483d47d81537ce89db381b07972 *inst/doc/MetaboDynamics.R
049756023a93433298368fe6f34f39c7 *inst/doc/MetaboDynamics.Rmd
ff5caf5e83f38b4bc631de4f94611df5 *inst/doc/MetaboDynamics.html
01b9297c5a2200132a8ac8e50797cad2 *inst/doc/MetaboDynamics_Guide_to_prior_setting.R
ce233e481d65c97d016404c63a4bca37 *inst/doc/MetaboDynamics_Guide_to_prior_setting.Rmd
5ec63aac1383897460ebc85925f8556c *inst/doc/MetaboDynamics_Guide_to_prior_setting.html
b1d7cac1d045fe3a94171eb1c54d1244 *inst/doc/MetaboDynamics_dataframes.R
8b50a875a62ed7a6f3b7bc96ed43084a *inst/doc/MetaboDynamics_dataframes.Rmd
e50ddef6a794aceb2b0921d2b2d89ab9 *inst/doc/MetaboDynamics_dataframes.html
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
5ba4e99275dc57270ea40124de25c9c9 *inst/stan/include/license.stan
ecf5f68a6d1f5356b16af2634f4bc45d *inst/stan/m_ANOVA_partial_pooling_cell_counts_euclidean_distance.stan
2d639d476a2ba53973e281b771c02344 *inst/stan/m_ANOVA_partial_pooling_cell_counts_euclidean_distance_robust.stan
9dfb52c7a0817179b271f498389abe61 *inst/stan/m_ANOVA_partial_pooling_euclidean_distance.stan
a2c67f3d91f8ce652e4a54356ee9ccd3 *inst/stan/m_ANOVA_partial_pooling_euclidean_distance_robust.stan
8c9526f14f4a5bf8613f467dca860735 *inst/stan/m_cluster_distances_padded.stan
22b22c45a41dba64ba586b3ece2c2fe7 *man/IDs.Rd
ffab397e58946ba15f5eb0a2765e4e4a *man/MetaboDynamics-package.Rd
746d1deec0fd045beebe1ef4528ef048 *man/ORA_hypergeometric.Rd
50a037954547aa46e69b39e723d74d76 *man/cluster_dynamics.Rd
ff71e2bbef9d14c7cba81ca667b44ff9 *man/compare_dynamics.Rd
c76ef6bd4673d5953f5aee12fd43eb62 *man/compare_metabolites.Rd
e266d5b659e8eda5b5cd8fb754d1a51b *man/diagnostics_dynamics.Rd
4903867388f2352304c3bb157f7d95d1 *man/dot-calculate_distances.Rd
c78fe1998fbac86f8c50a2e94273636e *man/dot-calculate_jaccard.Rd
8e6920ee3ddc95bf5029d65ad5be0ff5 *man/dot-check_fit_dynamics_input.Rd
e407db15991c1c5081bdd598b7752a3a *man/dot-eu.Rd
ff029b9cc54f648c21965ccb378714f6 *man/dot-get_boot_ph.Rd
fe77155fda9ae9c06af14193e7afeaae *man/dot-hierarchical_clustering.Rd
4bf9687614ed7ca2f7c1ab275dd0010c *man/dot-similarity.Rd
0b3c7768fa6ed2523589b57c71360bd8 *man/estimates_dynamics.Rd
da393af456742f234e2638d96ca27ea3 *man/figures/README-MetaboDynamics_graphical_abstract.png
596476ebf2f4b32d855979cc3b2bad35 *man/figures/README-MetaboDynamics_questions.png
35928355d4f50a981af2da65de6715eb *man/figures/README-logo.png
96e9b726b327ef525d32e1c05a827270 *man/figures/counts_raw.png
9dac18ca0d4fc8f5e7f14ae893dd689b *man/figures/logo.svg
114921f62dfb8a2a5f92000d07e0c015 *man/fit_dynamics_model.Rd
cb6bebf3139d8220f6d16169a27d59d3 *man/get_ORA_annotations.Rd
86e28ded8c742d53100b37fdf16dee59 *man/heatmap_dynamics.Rd
d17d723329c9356017485265ca36d12b *man/heatmap_metabolites.Rd
94161797e1b53c0cc3f4e853493d3739 *man/longitudinalMetabolomics.Rd
b347d850dfc7e52943b23cc1e9ce50da *man/longitudinalMetabolomics_df.Rd
6265203da3ed60352fd8271701fab15a *man/metabolite_modules.Rd
f29fde34cd23f686cad2eebc0756ae01 *man/modules_compounds.Rd
3f7426a80632763597a6303e24358fb6 *man/plot_ORA.Rd
d0876d88835cd25f6043709b0cca44f4 *man/plot_PPC.Rd
740cc188e7dc84ad7dd8295c2187e293 *man/plot_cluster.Rd
b1ba779d0fbc4a826eaf5ce9b0c264ee *man/plot_diagnostics.Rd
ac819bd55c9b170515c433fce293c811 *man/plot_estimates.Rd
564c40d0e86bb1e58d039ff240e97b9f *src/Makevars
8d9c4c05e7c18e5db8c7462f1518ddfb *src/RcppExports.cpp
feecc7f5d84071abd7d309968358c393 *src/stanExports_m_ANOVA_partial_pooling_cell_counts_euclidean_distance.cc
55d26f54fa287407ebb2e4925ba751cd *src/stanExports_m_ANOVA_partial_pooling_cell_counts_euclidean_distance.h
1b3e8166e415d58f691f8e14e32ff638 *src/stanExports_m_ANOVA_partial_pooling_cell_counts_euclidean_distance_robust.cc
a336f27256301b2fa222a028498b46e0 *src/stanExports_m_ANOVA_partial_pooling_cell_counts_euclidean_distance_robust.h
0623f37362d1d1d8c76b4ff92d4b50d7 *src/stanExports_m_ANOVA_partial_pooling_euclidean_distance.cc
4f4b1a2ea9d69a642265cfde92beb0e9 *src/stanExports_m_ANOVA_partial_pooling_euclidean_distance.h
7393db855a31e22297605f1d83995100 *src/stanExports_m_ANOVA_partial_pooling_euclidean_distance_robust.cc
7a1e4118bdc25b112cb1652574453769 *src/stanExports_m_ANOVA_partial_pooling_euclidean_distance_robust.h
ade0263aa4236eec59fa9522a5e36d10 *src/stanExports_m_cluster_distances_padded.cc
cb2a884f667ddd0a639f62077ff015aa *src/stanExports_m_cluster_distances_padded.h
ec8ac71b75caa4df86b29d26b5f6dce8 *tests/testthat.R
5c2dd3d4956ac77b7e24618e3ca16cce *tests/testthat/test-ORA_hypergeometric.R
0caf7d5ab466d73e98dca36c3f6944c0 *tests/testthat/test-cluster_dynamics.R
7c46cf59cccf59924f36719afd0529a5 *tests/testthat/test-compare_dynamics.R
1b9df4e81ed2da1d9470f25125a44be1 *tests/testthat/test-compare_metabolites.R
58e3a67762754db0e63b5e388c0e0602 *tests/testthat/test-diagnostics_dynamics.R
a9bbc724f85f54943aca2833668ba73a *tests/testthat/test-estimates_dynamics.R
2f4cfbbc61335d89fe7dc28a3f9e5c8d *tests/testthat/test-fit_dynamics_model.R
a69fa6b003b74e77c6fae490895c65d4 *tests/testthat/test-get_ORA_annotations.R
f336aee473df4e0207f707abec2b828a *tests/testthat/test-heatmap_dynamics.R
ea3a1f4780b664e096c75ad64373b3f2 *tests/testthat/test-heatmap_metabolites.R
9337a1346266c7c1bb021d038980aa86 *tests/testthat/test-plot_ORA.R
d9e6a47940d7bcf63db83762d5ebd0ea *tests/testthat/test-plot_PPC.R
b81fd438e8446b8e8ff957cf28b70918 *tests/testthat/test-plot_cluster.R
7a349552517e5a8fb486261dfa477dcb *tests/testthat/test-plot_diagnostics.R
cfff3f66c533b4876ceaa7bf699a38e3 *tests/testthat/test-plot_estimates.R
049756023a93433298368fe6f34f39c7 *vignettes/MetaboDynamics.Rmd
ce233e481d65c97d016404c63a4bca37 *vignettes/MetaboDynamics_Guide_to_prior_setting.Rmd
8b50a875a62ed7a6f3b7bc96ed43084a *vignettes/MetaboDynamics_dataframes.Rmd
