310db86b8117e8b584801aeb224bafe4 *DESCRIPTION
c5711a8f48fefb2d3e0415225f547e97 *NAMESPACE
96b94be2cdad6070d17961f278e17af8 *NEWS.md
dcdbd25dfefc33575918f1c628fc1731 *R/analysis_wrappers_v15.R
6b59298cb050b1b2f57256f62df2a197 *R/plotting_v17.R
a8f4341a0f5cb5c475a1891342393030 *R/utils_v13.R
96d0602706c44c920817b970ebafe2b1 *build/vignette.rds
cd1ea039d545d307907918aa1d3898eb *inst/doc/PostChicago_v19.R
8237f6faf6d1a3a0fdd6d7e01409e2af *inst/doc/PostChicago_v19.Rmd
25115d045888b307e8cf950896ef90cd *inst/doc/PostChicago_v19.html
ccf1a513d382b3f30e8eb905ede83637 *inst/extdata/dataPath/RA_0h_rep1.chinput
7b9c6ab34351ee17e6aa9bf2fcf28d80 *inst/extdata/dataPath/RA_0h_rep2.chinput
8120f07f703338a8b944d9fab9878c6f *inst/extdata/dataPath/RA_72h_rep1.chinput
78ebb32c604a6e329dca62317d2a796d *inst/extdata/dataPath/RA_72h_rep2.chinput
885bb874684124373d68342db32910dd *inst/extdata/designDir/DpnII.mm10.chr11.Hoxb3.rmap
8d23e3e35ec0fbdd7fb73f13f15e1ad7 *inst/extdata/designDir/My.baitmap
55f5fa70425905769227ccf6af052ab2 *inst/extdata/intervals/K27ac_peaks.bed
67e1796c609a0824300b0a00fb0448ce *inst/extdata/intervals/K27me3_peaks.bed
33563678b2cb8608ccfebeacc0e2592e *inst/extdata/postchicago/ints_all.txt
2018894ec3bdd05b05c76ed1dbda174e *inst/extdata/results/cd_RA_0h.rds
82d9ff08d9ccc950fd22b43dbb0ab123 *inst/extdata/results/cd_RA_0h_rep1.rds
15f223a611efd1ec8dae3e272e361b08 *inst/extdata/results/cd_RA_0h_rep2.rds
4de45f65b004e0294d0cdb819c1f12db *inst/extdata/results/cd_RA_72h.rds
7681012b5978de6c272da84ba6010618 *inst/extdata/results/cd_RA_72h_rep1.rds
abe6262c2c238a16ef920b50f2d336a2 *inst/extdata/results/cd_RA_72h_rep2.rds
97eb9390f44e8e04b7167888f2efa3c9 *inst/extdata/results/fnreadsPerBait
d302b8d26117341c6c7aef2ebd2c1f99 *inst/extdata/results/gDistrTotIntsPerBait
4c614388896e937096fb69909442d635 *inst/extdata/results/hSigIntsPerBait
415ddfd56d6ced3cc5005bab2e1cfdf4 *inst/extdata/results/iDistReadsPerSigIntPerBait
53242900d5497d8762801211d0218f0f *man/PostChicago-package.Rd
f8a9f180182a42e6c32ed2a22bb3e2d0 *man/aggregatePeaks.Rd
9606fae65b238ce5671c8eb0f2198ad8 *man/aggregatePeaks_regions.Rd
df7ed2e4d41bd6ff7bc5115aae7841ec *man/annotateInts.Rd
ee8b7f8dc6bd56eec3e8f33131729118 *man/baitmap2baited_genes.Rd
0cbd1a051bef297fdc159d9fec008731 *man/boxplotsCapC.Rd
3d04e24f55560017ba7e283fbf78506a *man/getMatrix.Rd
787f33d05e6838e3f9746055fea5f7ad *man/loadCdList.Rd
aaa4cfde0457266bfe3bf0c2ecc31f24 *man/loadGrl.Rd
2e97ad9417be2d4ec6cb5e8c30c0d33d *man/makeBedGraphs.Rd
69e878fbdd0a4702b407496b32f348ee *man/makeIntsTable.Rd
757d5a69090b98aa5d3e6be859d82522 *man/makeOneGeneOnePeak.Rd
576c34c26e875d314e4fe5dc41cf5282 *man/makeQCplots.Rd
41534aa10e02fd53bb2b1055563d5bf9 *man/plotAggregatePeaks.Rd
888858519d24b68e6b71c801f3c826c7 *man/plotInteractions.Rd
c6684ef7f42f3aef5afbf15f9237a55b *man/plotStats.Rd
b6511e41f030d020273848be587fa75f *man/quantifyWithinPeaks.Rd
2cfc3ff94bdd281a1931fd5ee3dbb63f *man/rmap2rmapgr.Rd
0e244d0137931081a401247b4f561ddc *man/runChicagoForPostChicago.Rd
8237f6faf6d1a3a0fdd6d7e01409e2af *vignettes/PostChicago_v19.Rmd
