Package: UCell
Type: Package
Title: Rank-based signature enrichment analysis for single-cell data
Version: 2.17.1
Authors@R: c(
  person('Massimo', 'Andreatta', 
     email = 'massimo.andreatta@unige.ch',
     role = c('aut','cre'),
     comment = c(ORCID = '0000-0002-8036-2647')),
  person('Santiago', 'Carmona', 
     email = 'santiago.carmona@unige.ch',
     role = c('aut'),
     comment = c(ORCID = '0000-0002-2495-0671'))
  )
Description: UCell is a package for evaluating gene signatures in single-cell datasets. 
    UCell signature scores, based on the Mann-Whitney U statistic, are robust to dataset size and heterogeneity, and their calculation
    demands less computing time and memory than other available methods, enabling the processing of large datasets in a few minutes even
    on machines with limited computing power. UCell can be applied to any single-cell data matrix, and includes functions to directly
    interact with SingleCellExperiment and Seurat objects.
Depends: R(>= 4.3.0)
Imports: methods, data.table(>= 1.13.6), Matrix, stats, BiocParallel,
        BiocNeighbors, SingleCellExperiment, SummarizedExperiment
Suggests: scater, testthat, DelayedArray, scRNAseq, reshape2,
        patchwork, ggplot2, BiocStyle, Seurat(>= 5.0.0),
        SeuratObject(>= 5.0.0), knitr, rmarkdown
biocViews: SingleCell, GeneSetEnrichment, Transcriptomics,
        GeneExpression, CellBasedAssays
VignetteBuilder: knitr
BugReports: https://github.com/carmonalab/UCell/issues
URL: https://github.com/carmonalab/UCell
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: FALSE
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.1.0
git_url: https://git.bioconductor.org/packages/UCell
git_branch: devel
git_last_commit: f778e09
git_last_commit_date: 2026-09-08
Repository: Bioconductor 3.24
Date/Publication: 2026-09-08
NeedsCompilation: no
Packaged: 2026-09-09 01:08:24 UTC; biocbuild
Author: Massimo Andreatta [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8036-2647>),
  Santiago Carmona [aut] (ORCID: <https://orcid.org/0000-0002-2495-0671>)
Maintainer: Massimo Andreatta <massimo.andreatta@unige.ch>
