Package: decemedip
Title: hierarchical Bayesian modeling for cell type deconvolution of
        immunoprecipitation-based DNA methylome
Version: 0.99.8
Authors@R: 
    person("Ning", "Shen", , "ning.shen.wk@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-2974-1086"))
Description: The R package decemedip is a novel computational paradigm developed
  for inferring the relative abundances of cell types and tissues measure by 
  methylated DNA immunoprecipitation sequencing (MeDIP-Seq). This paradigm 
  allows using reference data from other technologies such as microarray or WGBS.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
biocViews: Software, ImmunoOncology, DNAMethylation, Epigenetics,
        Sequencing, WholeGenome
Biarch: true
Depends: R (>= 4.5.0)
Imports: bayesplot, cowplot, dplyr, GenomicRanges, ggplot2, IRanges,
        magrittr, Matrix, matrixStats, MEDIPS, methods, purrr, R.utils,
        Rcpp, RcppParallel, rlang, rstan, rstantools, S4Vectors,
        SummarizedExperiment
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0)
SystemRequirements: GNU make
Suggests: knitr, rmarkdown, BiocStyle, devtools, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://github.com/nshen7/decemedip
BugReports: https://github.com/nshen7/decemedip/issues
git_url: https://git.bioconductor.org/packages/decemedip
git_branch: devel
git_last_commit: 0615c99
git_last_commit_date: 2025-10-06
Repository: Bioconductor 3.23
Date/Publication: 2026-01-13
NeedsCompilation: yes
Packaged: 2026-01-13 22:18:31 UTC; biocbuild
Author: Ning Shen [aut, cre] (ORCID: <https://orcid.org/0000-0002-2974-1086>)
Maintainer: Ning Shen <ning.shen.wk@gmail.com>
