Package: scCertify
Title: Explainable Confidence Scoring for Single-Cell Annotations
Version: 0.99.7
Authors@R: 
    person(
      "Jaya Surya",
      "Doddetipalli",
      email = "jayasuryadoddetipalli@gmail.com",
      role = c("aut", "cre"),
      comment = c(
        ORCID = "0009-0002-8975-4425"
      )
    )
Description: 
    scCertify provides an explainable framework for assessing the
    confidence of cell-type annotations in single-cell RNA sequencing
    data. Confidence scores are computed using marker enrichment,
    neighborhood agreement, entropy-based uncertainty estimation,
    and ontology-aware label matching to support transparent
    interpretation of annotation quality.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 8.0.0
Imports: Seurat, SingleCellExperiment, SummarizedExperiment, FNN,
        entropy, UCell
Suggests: BiocStyle, SingleR, celldex, ggplot2, knitr, rmarkdown,
        scDblFinder, SeuratObject, testthat (>= 3.0.0)
biocViews: Software, SingleCell, RNASeq, GeneExpression, Sequencing
URL: https://github.com/Jaya-Surya-dev/scCertify
BugReports: https://github.com/Jaya-Surya-dev/scCertify/issues
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/scCertify
git_branch: devel
git_last_commit: 4f082f1
git_last_commit_date: 2026-08-21
Repository: Bioconductor 3.24
Date/Publication: 2026-09-07
NeedsCompilation: no
Packaged: 2026-09-07 23:55:52 UTC; biocbuild
Author: Jaya Surya Doddetipalli [aut, cre] (ORCID:
    <https://orcid.org/0009-0002-8975-4425>)
Maintainer: Jaya Surya Doddetipalli <jayasuryadoddetipalli@gmail.com>
