Package: immReferent
Title: An Interface for Immune Receptor and HLA Gene Reference Data
Version: 1.0.0
Authors@R: c(
    person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "ncborch@gmail.com"))
Description: Provides a consistent interface for downloading, storing,
        and accessing immune receptor (TCR/BCR) and HLA sequences from
        IMGT, IPD-IMGT/HLA, and OGRDB (AIRR-C). Supports export to
        popular analysis tools including MiXCR, TRUST4, Cell Ranger,
        and IgBLAST. This package serves as a core dependency for
        immunogenomics packages, ensuring reliable and high-quality
        sequence access with local caching for reproducibility.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
biocViews: Software, Annotation, Sequencing
Depends: R (>= 4.5.0)
Imports: Biostrings, httr, jsonlite, methods, rvest, tibble, yaml
Suggests: BiocManager, BiocStyle, knitr, mockery, spelling, rmarkdown,
        testthat (>= 3.0.0), withr
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/BorchLab/immReferent/
BugReports: https://github.com/BorchLab/immReferent/issues
Config/pak/sysreqs: libicu-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 13:05:59 UTC
RemoteUrl: https://github.com/bioc/immReferent
RemoteRef: RELEASE_3_23
RemoteSha: 5f85d75251beb23f48b480f4f542a8d36696999b
NeedsCompilation: no
Packaged: 2026-05-01 09:37:05 UTC; root
Author: Nick Borcherding [aut, cre]
Maintainer: Nick Borcherding <ncborch@gmail.com>
Built: R 4.6.0; ; 2026-05-01 09:46:39 UTC; unix
