Package: Battlefield
Type: Package
Title: Swiss-army toolkit for selecting niche fronts and invasive
        margins in spatial transcriptomics data
Version: 1.0.0
Authors@R: c(
    person("Jean-Philippe","Villemin",email="jpvillemin@gmail.com",role=c("aut", "cre"),
    comment = c(ORCID = "0000-0002-1838-5880")),
    person("European Research Council",
         role = "fnd",
         comment = "ERC-2022"))
Description: Battlefield is a Swiss-army toolkit originally developed
        to define and extract spatial spots from specific tissue
        regions—such as front regions, niche borders, invasive margins,
        and cluster interfaces—using spatial transcriptomics data or
        clustered tissue maps. It has since been extended to support
        trajectory selection and layer inspection, and now provides a
        collection of low-level utilities for spatial transcriptomics
        analysis. These utilities are primarily intended to be reused
        within higher-level analytical packages. It is designed to work
        with sequencing-based platforms such as Visium at several
        resolutions and Visium HD(binned).
URL: https://github.com/ZheFrench/BattleField,
        https://zhefrench.github.io/Battlefield/
BugReports: https://github.com/ZheFrench/BattleField/issues
License: CeCILL | file LICENSE
Encoding: UTF-8
LazyData: FALSE
Depends: R (>= 4.5)
biocViews: Sequencing, Software, Transcriptomics, Spatial
Imports: stats, RANN, dplyr, SummarizedExperiment, methods
Suggests: BiocStyle, knitr, markdown, rmarkdown, SpatialExperiment,
        SpatialExperimentIO, VisiumIO, ggplot2, pheatmap, pals,
        OSTA.data, tidyr, STexampleData, testthat (>= 3.0.0),
        codetools, grid, tools
Config/testthat/edition: 3
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 13:06:28 UTC
RemoteUrl: https://github.com/bioc/Battlefield
RemoteRef: RELEASE_3_23
RemoteSha: a0574ac55d93df6c279f7eb5da4b815f73c43528
NeedsCompilation: no
Packaged: 2026-04-29 18:12:46 UTC; root
Author: Jean-Philippe Villemin [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-1838-5880>),
  European Research Council [fnd] (ERC-2022)
Maintainer: Jean-Philippe Villemin <jpvillemin@gmail.com>
Built: R 4.6.0; ; 2026-04-29 18:32:45 UTC; windows
