Package: ClusterGVis
Title: One-Step to Cluster and Visualize Gene Expression Data
Version: 0.99.9
Authors@R: 
  person(given = "Jun", 
        family = "Zhang",    
        email = "1138976957@qq.com", 
        role  = c("aut", "cre", "cph"), 
        comment = c(ORCID = "0000-0001-7692-9105"))
Description: Provides a streamlined workflow for clustering and
        visualizing gene expression patterns, particularly from
        time-series RNA-Seq and single-cell experiments. The package is
        designed to integrate seamlessly within the Bioconductor
        ecosystem by operating directly on standard data classes such
        as `SummarizedExperiment` and `SingleCellExperiment`. It
        implements common clustering algorithms (e.g., k-means, fuzzy
        c-means) and generates a suite of publication-ready
        visualizations to explore co-expressed gene modules. Functions
        are also included to facilitate the visualization of clustering
        results derived from other popular tools.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.4)
Imports: colorRamps, dplyr, e1071, factoextra, ggplot2, grDevices,
        grid, Matrix, methods, purrr, reshape2, scales, stats, tibble,
        SingleCellExperiment, SummarizedExperiment, igraph, VGAM,
        scuttle
Suggests: Biobase, ComplexHeatmap, clusterProfiler, TCseq,
        org.Mm.eg.db, circlize, knitr, monocle, pheatmap, rmarkdown,
        Seurat, WGCNA, utils, BiocManager, S4Vectors, pheatmap,
        testthat (>= 3.0.0)
biocViews:
        RNASeq,Transcriptomics,Visualization,SingleCell,GeneExpression,Clustering
URL: https://github.com/junjunlab/ClusterGVis/,
        https://junjunlab.github.io/ClusterGvis-manual/
BugReports: https://github.com/junjunlab/ClusterGVis/issues
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libxml2-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-11-13 01:39:49 UTC
RemoteUrl: https://github.com/bioc/ClusterGVis
RemoteRef: HEAD
RemoteSha: 15fc47048540b2bc41df2ee539d5d4de54b68ce3
NeedsCompilation: no
Packaged: 2026-03-05 09:05:14 UTC; root
Author: Jun Zhang [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-7692-9105>)
Maintainer: Jun Zhang <1138976957@qq.com>
Built: R 4.6.0; ; 2026-03-09 10:56:59 UTC; windows
