ece5aa136bbe070b522d7a81b4e1fcb9 *CITATION
b681175d758f1ab0cc43161aac94902c *DESCRIPTION
2e2dbdb924b38c37791b1e6ab42c5315 *INDEX
2aed258e05757e089b68e11684cf48f8 *Meta/Rd.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
72fec86dc733f2a445f9e1ccf095aaa5 *Meta/hsearch.rds
2c5abab8385da464203a15682c7bad06 *Meta/links.rds
44ae3f786989887290d37779063183af *Meta/nsInfo.rds
ec8c06332ed3eac0ec752d68024a3dfa *Meta/package.rds
0f5cf71b64355ee17ff3d01a66e86a5b *Meta/vignette.rds
d3e9bd88ee3d539575659c61b55e3800 *NAMESPACE
2900fd99026a271d7402396ef52cc105 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/LACHESIS
11e83b751c8747b1bc32d53e80bdbb67 *R/LACHESIS.rdb
4ccd96fe72d4d2bb10739220c5bcf29a *R/LACHESIS.rdx
d19bce3983caa79757eddae019980093 *README.md
be0c3cd3b5946279b93543e74b82ba67 *doc/index.html
4b78fb793f25efd33163426b97a4e1e3 *doc/vignette_LACHESIS.R
2818e632df1c7c1b17db31c304c890dc *doc/vignette_LACHESIS.Rmd
ee79776bdcd92f3e52ec072b524ee96f *doc/vignette_LACHESIS.html
94d2629d85dd4ad90b5186bc2a9f8f04 *extdata/ACESeq/NBE11_comb_pro_extra2.59_0.83.txt
8b994519d2411f18b60adfd26acbf89b *extdata/ASCAT/S98.segments.txt
898b737c1e9a6cf972c4121d937d0c1d *extdata/LACHESIS_package_structure.png
94d2629d85dd4ad90b5186bc2a9f8f04 *extdata/NBE11/NBE11_comb_pro_extra2.59_0.83.txt
f2c857419ed7f5dbbffb0d8bf49a3e66 *extdata/NBE11/snvs_NBE11_somatic_snvs_conf_8_to_10.vcf
3fb79b6ea7c72d99a6f70a740c21897a *extdata/NBE15/NBE15_comb_pro_extra2.51_1.txt
cab67f45f44823a375a6dc56fcc6ee09 *extdata/NBE15/snvs_NBE15_somatic_snvs_conf_8_to_10.vcf
8c2861c8ba5fd9684ab865ff57b1a98c *extdata/NBE15_Decomposed_MutationType_Probabilities.txt
797d549a3dbe3e849b6368f107642cd6 *extdata/NBE26/NBE26_comb_pro_extra3.25_0.88.txt
c2404a7f1d0318ca172913d1e81038a0 *extdata/NBE26/snvs_NBE26_somatic_snvs_conf_8_to_10.vcf
c512c56d132731f632c2eb60b9b77315 *extdata/NBE63/NBE63_comb_pro_extra2.3_0.97.txt
a0cbbc83811d5f2f7f5fa3d605c9160f *extdata/NBE63/snvs_NBE63_somatic_snvs_conf_8_to_10.vcf
cbe3b7e8f5b22a068a48b262a0b57b19 *extdata/PURPLE/NB-S-599-T.purple.cnv.somatic.tsv
f4e1e6bf35e79c2e8526ff6ab3e8285d *extdata/Sample_template.txt
e458dac4d633e7813bf0dc172e2d9c6a *extdata/Sample_template.xlsx
1f9e529df8c9acdffd07bddf25f58c11 *extdata/VAF_negative_example.png
8a03b871ab43dd81ac75e324e83be133 *extdata/VAF_positive_example.png
f297b6b0a60ba50cff8b7b29e8822a8c *extdata/cancerhotspots_v2_GRCh37_adapted.tsv
d27d41ecfcf573d40f07f0bc3578ccff *extdata/cancerhotspots_v2_GRCh38_adapted.tsv
ea81f3887d05ae2971a537a5705968e7 *extdata/mutect.somatic.vcf.gz
a099dd5544af73fcac562e530cfa78d0 *extdata/mutect.somatic.vcf.gz.csi
12829bd76d98be37c3a2843c89c2b2f8 *extdata/other.vcf
0176ae877742f09b2780db5bdba5134d *extdata/strelka2.somatic.snvs.vcf.gz
f3936b51b11414d93b113331d4893ed5 *extdata/strelka2.somatic.snvs.vcf.gz.csi
b66c282d2f9941930acf02763d07fe05 *help/AnIndex
f850ae79ed9344ecf1db653b3398f24a *help/LACHESIS.rdb
564326c1dc814e4982c7b1bd7e5f6ae0 *help/LACHESIS.rdx
ba6fde9f41b06f8056f099b0a863bb4c *help/aliases.rds
a83ab9d604d3715d18a513d9fb4cbd97 *help/figures/LACHESIS_logo.svg
113422f46ac3bf0f784903015aaa8214 *help/paths.rds
54bdf54fdc177c11be84e2512fd63254 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
2f8f961f8ad62b115ba13dd38c8d198a *intdata/hg19.sizes
83fb1c17d81cedfa9d5bbd663a09b4e2 *intdata/mm10.sizes
645e86ccf2d7dabf731c1b3ec1552b7a *tinytest/test_nbImport.R
1a431e20711554b480050e1b9de3951c *tinytest/test_readCNV.R
2aba5ee4ea9e82469415a25c55803e2a *tinytest/test_readVCF.R
