# Generated by roxygen2: do not edit by hand

export(LACHESIS)
export(MRCA)
export(classifyLACHESIS)
export(clonalMutationCounter)
export(estimateClonality)
export(nbImport)
export(normalizeCounts)
export(plotClinicalCorrelations)
export(plotClonality)
export(plotDiseaseTrajectories)
export(plotLachesis)
export(plotMutationDensities)
export(plotNB)
export(plotSurvival)
export(plotVAFdistr)
export(readCNV)
export(readVCF)
import(data.table)
import(ggplot2)
import(gridExtra)
import(survival)
import(survminer)
import(tidyr)
import(vcfR)
importFrom(Biostrings,getSeq)
importFrom(RColorBrewer,brewer.pal)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,Axis)
importFrom(graphics,abline)
importFrom(graphics,arrows)
importFrom(graphics,axis)
importFrom(graphics,box)
importFrom(graphics,grid)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rect)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(stats,cor)
importFrom(stats,dbinom)
importFrom(stats,density)
importFrom(stats,dmultinom)
importFrom(stats,end)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,plot.ecdf)
importFrom(stats,pnbinom)
importFrom(stats,qchisq)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,setNames)
importFrom(stats,start)
importFrom(utils,packageVersion)
