Package: SMTrackR
Type: Package
Title: SMTrackR: an R/Bioconductor package for mapping protein binding
        at individual DNA molecules
Version: 1.0.0
Date: 2024-12-31
Authors@R: 
    c( person (given = "Aashna",
               family = "Bansal", 
               role = c("aut", "ctb"),
               email = "aashna_b@bt.iitr.ac.in"),
       person (given = "Himani",
               family = "Barmola", 
               role = c("aut", "ctb"),
               email = "km_h@bt.iitr.ac.in"),
       person (given = "Shivam",
               family = "Yadav", 
               role = c("aut", "ctb"),
               email = "shivam_y@bt.iitr.ac.in"),
       person (given = "Satyanarayan",
               family = "Rao", 
               role = c("aut", "cre"),
               email = "satyanarayan.rao@bt.iitr.ac.in",
               comment = c(ORCID="0000-0001-7678-3505"))
     )
Description: The package uses exogenous enzyme imprinted information to
        map protein-DNA binding on individual sequenced DNA molecules.
        For example, GpC methyltransferase, CpG methyltransferase, and
        Adenine methyltransferases. Public datasets from such assays
        are compiled into tracks, and hosted at public servers like
        Galaxy for their seamless access by this package.
biocViews: NucleosomePositioning, Visualization, GeneTarget,
        GenomeAssembly
Imports: jsonlite, GenomicRanges, rtracklayer, stringr, BiocFileCache,
        S4Vectors
License: MIT + file LICENSE
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.2
Depends: R (>= 4.5)
URL: https://www.raolab.in
BugReports: https://github.com/satyanarayan-rao/SMTrackR
Contact: mailto:satyanarayan.rao@bt.iitr.ac.in
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 13:06:34 UTC
RemoteUrl: https://github.com/bioc/SMTrackR
RemoteRef: RELEASE_3_23
RemoteSha: 9d73803292292a4231c0ce16897d783f5ad8926a
NeedsCompilation: no
Packaged: 2026-04-30 06:34:15 UTC; root
Author: Aashna Bansal [aut, ctb],
  Himani Barmola [aut, ctb],
  Shivam Yadav [aut, ctb],
  Satyanarayan Rao [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7678-3505>)
Maintainer: Satyanarayan Rao <satyanarayan.rao@bt.iitr.ac.in>
Built: R 4.6.0; ; 2026-04-30 06:43:56 UTC; windows
