# Identification and Classification of Spatial Artifacts in Visium and Visium HD Data

## Documentation for package ‘SpatialArtifacts’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

SpatialArtifacts-package | SpatialArtifacts: Detect and Classify Spatial Artifacts
classifyEdgeArtifacts | Classify Edge Artifacts into Hierarchical Categories
clumpEdges | Detect edge dryspots using spatial clustering
detectEdgeArtifacts | Unified Edge Artifact Detection
detectEdgeArtifacts_Visium | Detect edge artifacts in spatial transcriptomics data
detectEdgeArtifacts_VisiumHD | Detect Edge Artifacts in VisiumHD Data
focal_transformations | Apply morphological transformations to identify connected outlier regions
focal_transformations_terra | Morphological transformations using terra (optimized for VisiumHD)
problemAreas | Identify all problem areas in spatial transcriptomics data
problemAreas_WithMorphology_terra | Detect problem areas in VisiumHD data using morphological processing
SpatialArtifacts | SpatialArtifacts: Detect and Classify Spatial Artifacts
spe_vignette | Example SpatialExperiment for Vignettes