Package: annoLinker
Type: Package
Title: Annotating genomic regions through chromatin interaction links
Version: 1.0.0
Authors@R: 
    c(person(given="Jianhong", family="Ou", email="jou@morgridge.org", 
        role=c("aut", "cre"), comment=c(ORCID="0000-0002-8652-2488")),
        person(given='Kenneth', family='Poss', email='kposs@morgridge.org',
        role=c('aut', 'fnd')))
Description: Fast annotation of genomic peaks using DNA interaction
        data by constructing interaction networks with igraph, where
        peaks overlapping any node in a connected subgraph are
        annotated with all genes in that subgraph. The annotation
        evidence could be visualized as either a network graph or a
        genomic track integrated with gene annotation information.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
VignetteBuilder: knitr
biocViews: Network, Annotation, Visualization
Depends: R (>= 4.5.0)
Imports: AnnotationDbi, BiocGenerics, future.apply, GenomicRanges,
        GenomeInfoDb, igraph, IRanges, InteractionSet, methods,
        progressr, S4Vectors, Seqinfo, trackViewer, visNetwork
Suggests: BiocStyle, knitr, rtracklayer, rmarkdown, testthat,
        TxDb.Drerio.UCSC.danRer10.refGene, org.Dr.eg.db, future
URL: https://github.com/jianhong/annoLinker
BugReports: https://github.com/jianhong/annoLinker/issues
Config/pak/sysreqs: cmake libglpk-dev make libbz2-dev libicu-dev
        libjpeg-dev liblzma-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 13:06:16 UTC
RemoteUrl: https://github.com/bioc/annoLinker
RemoteRef: RELEASE_3_23
RemoteSha: a5bf22b78bb722f7329fcb311e2e00ddbe261d7c
NeedsCompilation: no
Packaged: 2026-04-29 18:11:04 UTC; root
Author: Jianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>),
  Kenneth Poss [aut, fnd]
Maintainer: Jianhong Ou <jou@morgridge.org>
Built: R 4.6.0; ; 2026-04-29 18:28:34 UTC; windows
