Package: parati
Type: Package
Title: Parental Allele Transmission Inference for Trio Genotype Data
Version: 1.0.0
Authors@R: 
    person("Jinyi", "Che", email = "chejinyi777@gmail.com", role = c("aut", "cre"))
Description: Infers maternal and paternal transmitted and
        non-transmitted alleles from phased trio genotype data. The
        package supports SNP-level analyses of genetic nurture and
        transgenerational effects. It interoperates with Bioconductor
        VCF infrastructure through support for VariantAnnotation::VCF
        objects and returns R objects for downstream analysis.
URL: https://github.com/newche/parati
BugReports: https://github.com/newche/parati/issues
License: GPL-3 + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
Imports: data.table, methods, openxlsx, R.utils, vcfR,
        VariantAnnotation, SummarizedExperiment, BiocGenerics,
        GenomeInfoDb
Suggests: BiocStyle, knitr, optparse, rmarkdown, testthat (>= 3.0.0),
        waldo
VignetteBuilder: knitr
biocViews: Genetics, SNP, Sequencing, VariantAnnotation, Software
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 13:06:57 UTC
RemoteUrl: https://github.com/bioc/parati
RemoteRef: RELEASE_3_23
RemoteSha: 4abcfd9e58da699b8609e6e9910ebc22d5b602ca
NeedsCompilation: no
Packaged: 2026-04-29 23:46:24 UTC; root
Author: Jinyi Che [aut, cre]
Maintainer: Jinyi Che <chejinyi777@gmail.com>
Built: R 4.6.0; ; 2026-04-29 23:49:51 UTC; windows
