# A unified language for interacting with Seurat and SingleCellExperiment

## Documentation for package ‘scLang’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

dimPlot | Creates a dimensionality reduction plot
dimredNames | Extract the names of available dimensionality reductions from object
dimredNames.default | Extract the names of available dimensionality reductions from object
dimredNames.Seurat | Extract the names of available dimensionality reductions from object
dimredNames.SingleCellExperiment | Extract the names of available dimensionality reductions from object
featurePlot | Create a dimensionality reduction plot to represent a feature
metadataDF | Extract metadata from object as a data frame
metadataDF.default | Extract metadata from object as a data frame
metadataDF.Seurat | Extract metadata from object as a data frame
metadataDF.SingleCellExperiment | Extract metadata from object as a data frame
metadataNames | Return metadata names
scCol | Extract a metadata/coldata column from object.
scCol.default | Extract a metadata/coldata column from object.
scCol.Seurat | Extract a metadata/coldata column from object.
scCol.SingleCellExperiment | Extract a metadata/coldata column from object.
scCol<- | Extract a metadata/coldata column from object.
scCol<-.default | Extract a metadata/coldata column from object.
scCol<-.Seurat | Extract a metadata/coldata column from object.
scCol<-.SingleCellExperiment | Extract a metadata/coldata column from object.
scColCounts | Extract per-group counts from the column of a single-cell expression object
scColPairCounts | Extract counts from two columns of a single-cell expression object
scColPairPercs | Extract percentages from two columns of a single-cell expression object
scDimredMat | Extracts a dimensionality reduction matrix from object.
scDimredMat.default | Extracts a dimensionality reduction matrix from object.
scDimredMat.Seurat | Extracts a dimensionality reduction matrix from object.
scDimredMat.SingleCellExperiment | Extracts a dimensionality reduction matrix from object.
scExpMat | Extracts the expression matrix from object.
scExpMat.default | Extracts the expression matrix from object.
scExpMat.dgCMatrix | Extracts the expression matrix from object.
scExpMat.matrix | Extracts the expression matrix from object.
scExpMat.Seurat | Extracts the expression matrix from object.
scExpMat.SingleCellExperiment | Extracts the expression matrix from object.
scGeneExp | Extracts the expression of a single gene
scGeneExp.default | Extracts the expression of a single gene
scGeneExp.dgCMatrix | Extracts the expression of a single gene
scGeneExp.matrix | Extracts the expression of a single gene
scGeneExp.Seurat | Extracts the expression of a single gene
scGeneExp.SingleCellExperiment | Extracts the expression of a single gene
scPCAMat | Extracts the PCA matrix from object.
scUMAPMat | Extracts the UMAP matrix from object.
violinPlot | Create a violin plot to represent a feature