# API Wrapper for ToppGene

## Documentation for package ‘scToppR’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

addToppData | Add toppData results to SingleCellExperiment or SummarizedExperiment metadata
addToppData | Add toppData results to SingleCellExperiment or SummarizedExperiment metadata
get_Entrez | Convert genes into Entrez format
get_ToppCats | Get a vector of ToppFun categories
ifnb.de | IFNB DE results
ifnb.markers.df | IFNB Marker DF
ifnb.markers.list.CD8T | IFNB Marker DF
pbmc.markers | PBMC markers
toppBalloon | Create a balloon plot from toppdata results
toppdata.airway | toppData example using the airway dataset results
toppdata.ifnb | toppData example for ifnb.de
toppdata.pbmc | toppData example
toppFun | Get results from ToppFun
toppPlot | Create a dotplot from toppdata results
toppSave | Save toppData results (optionally) split by celltype/cluster