# Data analysis for Single File Injections (SFIs) mode LC-MS analysis

## Documentation for package ‘sfi’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

find_2d_peaks | Feature extraction core function
find_peaks_low_res | Find peaks in low-resolution data using the 2D peak finding algorithm
getidelta | Optimize Delta Retention Time
getidelta.default | Optimize Delta Retention Time
getidelta.sfi_peaks | Optimize Delta Retention Time
getmzml | Read mzML File and Extract m/z, Retention Time, and Intensity
getsff | Cluster and Pair m/z and Retention Time Features
getsff.default | Cluster and Pair m/z and Retention Time Features
getsff.sfi_peaks | Cluster and Pair m/z and Retention Time Features
getsfm | Generate Sample Feature Matrix (SFM)
getsfm.default | Generate Sample Feature Matrix (SFM)
getsfm.sfi_peaks | Generate Sample Feature Matrix (SFM)
getwindow | Determine Optimal Retention Time Window
getwindow.default | Determine Optimal Retention Time Window
getwindow.sfi_peaks | Determine Optimal Retention Time Window
get_qc_features | Generate Quality Control Feature List
get_qc_features.default | Generate Quality Control Feature List
get_qc_features.sfi_peaks | Generate Quality Control Feature List
get_sfi_params | Quality Control for Mass Spectrometry Data
get_sfi_params.default | Quality Control for Mass Spectrometry Data
get_sfi_params.sfi_peaks | Quality Control for Mass Spectrometry Data
run_app | Run sfi Shiny App
sfi | Demo sfi data