Package: lefser
Type: Package
Title: R implementation of the LEfSE method for microbiome biomarker
        discovery
Description: lefser is an implementation in R of the popular 
  "LDA Effect Size (LEfSe)" method  for microbiome biomarker discovery. It uses 
  the Kruskal-Wallis test, Wilcoxon-Rank Sum test, and Linear Discriminant
  Analysis to find biomarkers of groups and sub-groups.
Version: 1.14.0
Date: 2024-04-27
Authors@R: c(
  person("Asya", "Khleborodova", , "asya.bioconductor@gmail.com", c("cre", "aut")),
  person("Ludwig", "Geistlinger", , "Ludwig.Geistlinger@sph.cuny.edu", "ctb"),
  person("Marcel", "Ramos", , "marcel.ramos@roswellpark.org", "ctb", c(ORCID = "0000-0002-3242-0582")),
  person("Samuel", "Gamboa-Tuz", , "Samuel.Gamboa.Tuz@gmail.com", "ctb"),
  person("Levi", "Waldron", , "levi.waldron@sph.cuny.edu", "ctb"),
  person("Sehyun", "Oh", , "Sehyun.Oh@sph.cuny.edu", "ctb")
  )
License: Artistic-2.0
Depends: SummarizedExperiment, R (>= 4.0.0)
Imports: coin, MASS, ggplot2, S4Vectors, stats, methods, utils, dplyr
Suggests: knitr, rmarkdown, curatedMetagenomicData, BiocStyle,
        phyloseq, testthat, pkgdown, covr, withr
Encoding: UTF-8
BugReports: https://github.com/waldronlab/lefser/issues
URL: https://github.com/waldronlab/lefser
VignetteBuilder: knitr
biocViews: Software, Sequencing, DifferentialExpression, Microbiome,
        StatisticalMethod, Classification
RoxygenNote: 7.3.1
Roxygen: list(markdown = TRUE)
git_url: https://git.bioconductor.org/packages/lefser
git_branch: RELEASE_3_19
git_last_commit: 0ab467f
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-04-30
NeedsCompilation: no
Packaged: 2024-05-01 04:23:17 UTC; biocbuild
Author: Asya Khleborodova [cre, aut],
  Ludwig Geistlinger [ctb],
  Marcel Ramos [ctb] (<https://orcid.org/0000-0002-3242-0582>),
  Samuel Gamboa-Tuz [ctb],
  Levi Waldron [ctb],
  Sehyun Oh [ctb]
Maintainer: Asya Khleborodova <asya.bioconductor@gmail.com>
