# Generated by roxygen2: do not edit by hand

export(adjustClusterLabels)
export(clusterPlot)
export(coreTune)
export(counts2h5)
export(enhanceFeatures)
export(exampleSCE)
export(featurePlot)
export(getRDS)
export(mcmcChain)
export(paraLapply)
export(qPlot)
export(qTune)
export(read10Xh5)
export(readVisium)
export(removeChain)
export(spatialCluster)
export(spatialEnhance)
export(spatialPreprocess)
importFrom(BiocFileCache,BiocFileCache)
importFrom(BiocFileCache,bfcrpath)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,SnowParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocSingular,ExactParam)
importFrom(BiocSingular,FastAutoParam)
importFrom(BiocSingular,IrlbaParam)
importFrom(BiocSingular,RandomParam)
importFrom(DirichletReg,DR_data)
importFrom(DirichletReg,DirichReg)
importFrom(Matrix,colSums)
importFrom(Matrix,readMM)
importFrom(Matrix,sparseMatrix)
importFrom(RCurl,url.exists)
importFrom(Rcpp,evalCpp)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,"altExp<-")
importFrom(SingleCellExperiment,"reducedDim<-")
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,altExp)
importFrom(SingleCellExperiment,altExpNames)
importFrom(SingleCellExperiment,counts)
importFrom(SingleCellExperiment,logcounts)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(arrow,read_parquet)
importFrom(assertthat,assert_that)
importFrom(coda,mcmc)
importFrom(dplyr,"%>%")
importFrom(dplyr,case_when)
importFrom(dplyr,group_by)
importFrom(dplyr,inner_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(ggplot2,aes_)
importFrom(ggplot2,coord_equal)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_polygon)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_void)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(magrittr,"%>%")
importFrom(mclust,Mclust)
importFrom(mclust,mclustBIC)
importFrom(methods,as)
importFrom(microbenchmark,microbenchmark)
importFrom(parallel,detectCores)
importFrom(purrr,compact)
importFrom(purrr,discard)
importFrom(purrr,imap)
importFrom(purrr,keep)
importFrom(purrr,map)
importFrom(rhdf5,h5createDataset)
importFrom(rhdf5,h5createFile)
importFrom(rhdf5,h5createGroup)
importFrom(rhdf5,h5ls)
importFrom(rhdf5,h5read)
importFrom(rhdf5,h5write)
importFrom(rjson,fromJSON)
importFrom(rlang,.data)
importFrom(scales,muted)
importFrom(scater,logNormCounts)
importFrom(scater,runPCA)
importFrom(scater,uniquifyFeatureNames)
importFrom(scran,getTopHVGs)
importFrom(scran,modelGeneVar)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,cov)
importFrom(stats,dist)
importFrom(stats,kmeans)
importFrom(stats,lm)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,rnbinom)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(tibble,as_tibble)
importFrom(tibble,column_to_rownames)
importFrom(tidyr,uncount)
importFrom(utils,download.file)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(xgboost,xgb.DMatrix)
importFrom(xgboost,xgb.params)
importFrom(xgboost,xgb.train)
importFrom(xgboost,xgboost)
useDynLib(BayesSpace)
useDynLib(BayesSpace, .registration=TRUE)
